Wall clock time and date at job start Mon Mar 30 2020 06:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99977 * 2 1 4 4 C 1.39045 * 119.89013 * 0.02562 * 3 2 1 5 5 C 1.38021 * 120.40629 * 179.71996 * 4 3 2 6 6 C 1.38661 * 120.17160 * 0.51883 * 5 4 3 7 7 O 1.35677 * 120.11695 * 179.76188 * 6 5 4 8 8 C 1.42905 * 116.99668 * 359.72497 * 7 6 5 9 9 C 1.40398 * 119.77285 * 359.48663 * 6 5 4 10 10 C 1.46780 * 120.19877 * 180.23024 * 9 6 5 11 11 O 1.21298 * 120.00031 * 0.02562 * 10 9 6 12 12 C 1.50699 * 120.00072 * 179.97438 * 10 9 6 13 13 H 1.09000 * 109.47396 * 330.00336 * 12 10 9 14 14 C 1.52998 * 109.46972 * 90.00098 * 12 10 9 15 15 C 1.50699 * 109.47283 * 210.00397 * 12 10 9 16 16 H 1.07997 * 119.99980 * 0.02562 * 15 12 10 17 17 C 1.37883 * 119.99705 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00304 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99819 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47148 * 119.99684 * 19 17 15 22 22 H 1.48497 * 109.47131 * 239.99900 * 19 17 15 23 23 C 1.38131 * 119.88873 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46696 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47085 * 300.00146 * 1 2 3 26 26 H 1.09001 * 109.47253 * 60.00153 * 1 2 3 27 27 H 1.08003 * 119.79686 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.91383 * 180.27946 * 5 4 3 29 29 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47054 * 299.99664 * 8 7 6 31 31 H 1.09000 * 109.47187 * 59.99720 * 8 7 6 32 32 H 1.08998 * 109.47224 * 180.02562 * 14 12 10 33 33 H 1.08997 * 109.47393 * 300.00014 * 14 12 10 34 34 H 1.08997 * 109.47105 * 60.00381 * 14 12 10 35 35 H 0.97001 * 120.00478 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.08529 * 0.03881 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2869 2.3763 0.0005 5 6 1.9023 3.6117 0.0064 6 6 3.2861 3.7009 0.0009 7 8 3.8899 4.9159 0.0017 8 6 3.0384 6.0635 0.0023 9 6 4.0602 2.5297 0.0003 10 6 5.5256 2.6132 -0.0004 11 8 6.0713 3.6965 0.0000 12 6 6.3522 1.3532 -0.0004 13 1 5.8076 0.5613 0.5138 14 6 6.6313 0.9264 -1.4430 15 6 7.6569 1.6082 0.7094 16 1 7.8664 2.5849 1.1199 17 6 8.5831 0.5945 0.8347 18 7 8.3278 -0.5950 0.3353 19 14 10.2000 0.9104 1.7152 20 1 10.2424 2.3195 2.1820 21 1 10.3150 -0.0016 2.8815 22 1 11.3283 0.6646 0.7815 23 6 3.4259 1.2813 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2086 2.3139 0.0005 28 1 1.3046 4.5112 0.0113 29 1 3.6471 6.9677 0.0025 30 1 2.4094 6.0497 -0.8878 31 1 2.4090 6.0486 0.8922 32 1 7.2288 0.0148 -1.4430 33 1 5.6877 0.7419 -1.9563 34 1 7.1760 1.7182 -1.9572 35 1 8.9792 -1.3082 0.4237 36 1 4.0137 0.3753 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048259128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:23 Heat of formation + Delta-G solvation = -83.594930 kcal Electronic energy + Delta-G solvation = -19969.169128 eV Core-core repulsion = 16805.744795 eV Total energy + Delta-G solvation = -3163.424333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39609 -38.91954 -37.93852 -35.95300 -33.68538 -31.51959 -30.06436 -29.60063 -27.37720 -26.81177 -25.10414 -24.06355 -22.32162 -21.28654 -19.08738 -17.77438 -17.20880 -16.68667 -15.97428 -15.77651 -15.43148 -15.08045 -14.61419 -14.50405 -14.12779 -13.64935 -13.36259 -12.80146 -12.77041 -12.39562 -12.29080 -12.20382 -11.55501 -11.49199 -11.39121 -10.97989 -10.82665 -10.64966 -10.54898 -10.31519 -10.15416 -9.99302 -8.89689 -8.81291 -8.42622 -8.16285 -7.58282 -5.96951 -4.01134 1.03602 1.60882 3.23277 3.32642 3.35866 3.43178 3.51105 3.52852 4.17378 4.48389 4.70942 4.76043 5.00182 5.08568 5.10295 5.16796 5.19754 5.35133 5.38558 5.43010 5.53260 5.61038 5.93928 6.06953 6.20122 6.37389 6.66417 6.71268 6.84597 7.00253 7.10500 7.41998 7.57884 7.66636 7.84483 8.08719 8.34321 8.80928 9.03762 9.62993 11.09992 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.006128 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.506755 B = 4568.255853 C = 5697.100956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.072 3.928 4 C -0.149 4.149 5 C -0.192 4.192 6 C 0.137 3.863 7 O -0.282 6.282 8 C 0.023 3.977 9 C -0.148 4.148 10 C 0.396 3.604 11 O -0.442 6.442 12 C 0.006 3.994 13 H 0.051 0.949 14 C -0.129 4.129 15 C -0.502 4.502 16 H 0.066 0.934 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.061 4.061 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.014 0.986 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 4.844 -1.510 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.028 3.972 4 C -0.168 4.168 5 C -0.211 4.211 6 C 0.090 3.910 7 O -0.194 6.194 8 C -0.072 4.072 9 C -0.150 4.150 10 C 0.273 3.727 11 O -0.316 6.316 12 C -0.013 4.013 13 H 0.069 0.931 14 C -0.187 4.187 15 C -0.540 4.540 16 H 0.085 0.915 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.079 4.079 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.728 5.126 -1.522 17.561 hybrid contribution 0.070 0.284 0.458 0.543 sum -16.658 5.409 -1.064 17.547 Atomic orbital electron populations 1.22990 0.79125 1.03663 1.00863 1.86126 1.20668 1.26487 1.89607 1.18768 0.92164 0.84166 1.02121 1.21081 0.99688 0.91712 1.04337 1.20916 0.93030 0.98303 1.08814 1.19280 0.90549 0.85614 0.95515 1.86376 1.34076 1.11470 1.87464 1.23077 0.95710 0.87761 1.00655 1.20495 0.97324 0.89984 1.07152 1.23067 0.86021 0.92842 0.70785 1.90411 1.74171 1.31833 1.35164 1.19153 0.95449 0.90779 0.95888 0.93072 1.21668 0.98740 1.03348 0.94905 1.21116 1.00189 0.97724 1.34970 0.91538 1.24930 0.98495 0.94983 0.95644 1.69874 1.35591 1.01999 1.45791 0.86449 0.83393 0.78428 0.79298 1.19631 1.21049 1.21003 1.20822 0.91207 0.98089 0.97824 0.88442 0.93022 0.93033 0.85356 0.85158 0.88295 0.93061 0.93027 0.88777 0.96734 0.94905 0.93000 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.46 10.49 -19.70 -0.21 -4.67 16 3 C 0.07 1.12 6.67 -39.32 -0.26 0.85 16 4 C -0.15 -1.96 9.02 -39.36 -0.36 -2.32 16 5 C -0.19 -2.67 9.02 -39.50 -0.36 -3.03 16 6 C 0.14 2.46 6.70 -38.61 -0.26 2.20 16 7 O -0.28 -5.12 8.56 -40.68 -0.35 -5.47 16 8 C 0.02 0.27 9.81 101.05 0.99 1.27 16 9 C -0.15 -2.99 5.88 -104.96 -0.62 -3.61 16 10 C 0.40 9.60 6.16 -30.86 -0.19 9.41 16 11 O -0.44 -11.76 14.76 -16.41 -0.24 -12.00 16 12 C 0.01 0.16 2.07 -92.93 -0.19 -0.04 16 13 H 0.05 1.33 6.47 -51.93 -0.34 0.99 16 14 C -0.13 -3.17 8.95 37.16 0.33 -2.83 16 15 C -0.50 -14.48 8.32 -34.44 -0.29 -14.77 16 16 H 0.07 2.00 7.14 -52.49 -0.37 1.63 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 19 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.06 -1.11 9.29 -38.95 -0.36 -1.47 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 26 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.13 1.25 6.27 -52.48 -0.33 0.92 16 28 H 0.13 1.39 6.29 -52.48 -0.33 1.06 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 31 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.16 2.88 6.36 -52.49 -0.33 2.55 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -33.11 303.09 -5.72 -38.83 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.43 Total: -1.92 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.66 Total: -11.48 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.63 Total: -24.87 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.80 Total: -22.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.11 -5.72 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.767 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds