Wall clock time and date at job start Mon Mar 30 2020 06:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99977 * 2 1 4 4 C 1.39045 * 119.89013 * 0.02562 * 3 2 1 5 5 C 1.38021 * 120.40629 * 179.71996 * 4 3 2 6 6 C 1.38661 * 120.17160 * 0.51883 * 5 4 3 7 7 O 1.35677 * 120.11695 * 179.76188 * 6 5 4 8 8 C 1.42905 * 116.99668 * 359.72497 * 7 6 5 9 9 C 1.40398 * 119.77285 * 359.48663 * 6 5 4 10 10 C 1.46780 * 120.19877 * 180.23024 * 9 6 5 11 11 O 1.21298 * 120.00031 * 0.02562 * 10 9 6 12 12 C 1.50699 * 120.00072 * 179.97438 * 10 9 6 13 13 H 1.09000 * 109.47396 * 330.00336 * 12 10 9 14 14 C 1.52998 * 109.46972 * 90.00098 * 12 10 9 15 15 C 1.50699 * 109.47283 * 210.00397 * 12 10 9 16 16 H 1.07997 * 119.99980 * 0.02562 * 15 12 10 17 17 C 1.37883 * 119.99705 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00304 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99819 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47148 * 119.99684 * 19 17 15 22 22 H 1.48497 * 109.47131 * 239.99900 * 19 17 15 23 23 C 1.38131 * 119.88873 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46696 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47085 * 300.00146 * 1 2 3 26 26 H 1.09001 * 109.47253 * 60.00153 * 1 2 3 27 27 H 1.08003 * 119.79686 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.91383 * 180.27946 * 5 4 3 29 29 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47054 * 299.99664 * 8 7 6 31 31 H 1.09000 * 109.47187 * 59.99720 * 8 7 6 32 32 H 1.08998 * 109.47224 * 180.02562 * 14 12 10 33 33 H 1.08997 * 109.47393 * 300.00014 * 14 12 10 34 34 H 1.08997 * 109.47105 * 60.00381 * 14 12 10 35 35 H 0.97001 * 120.00478 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.08529 * 0.03881 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2869 2.3763 0.0005 5 6 1.9023 3.6117 0.0064 6 6 3.2861 3.7009 0.0009 7 8 3.8899 4.9159 0.0017 8 6 3.0384 6.0635 0.0023 9 6 4.0602 2.5297 0.0003 10 6 5.5256 2.6132 -0.0004 11 8 6.0713 3.6965 0.0000 12 6 6.3522 1.3532 -0.0004 13 1 5.8076 0.5613 0.5138 14 6 6.6313 0.9264 -1.4430 15 6 7.6569 1.6082 0.7094 16 1 7.8664 2.5849 1.1199 17 6 8.5831 0.5945 0.8347 18 7 8.3278 -0.5950 0.3353 19 14 10.2000 0.9104 1.7152 20 1 10.2424 2.3195 2.1820 21 1 10.3150 -0.0016 2.8815 22 1 11.3283 0.6646 0.7815 23 6 3.4259 1.2813 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2086 2.3139 0.0005 28 1 1.3046 4.5112 0.0113 29 1 3.6471 6.9677 0.0025 30 1 2.4094 6.0497 -0.8878 31 1 2.4090 6.0486 0.8922 32 1 7.2288 0.0148 -1.4430 33 1 5.6877 0.7419 -1.9563 34 1 7.1760 1.7182 -1.9572 35 1 8.9792 -1.3082 0.4237 36 1 4.0137 0.3753 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048259128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:23 Heat of formation + Delta-G solvation = -104.450509 kcal Electronic energy + Delta-G solvation = -19970.073494 eV Core-core repulsion = 16805.744795 eV Total energy + Delta-G solvation = -3164.328699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65915 -40.11551 -39.58634 -37.16703 -35.78456 -33.12735 -31.83904 -30.72171 -28.30856 -27.73760 -27.27836 -25.65575 -23.78249 -22.65427 -20.64053 -19.09816 -18.45555 -18.34648 -17.63635 -16.89255 -16.80195 -16.39995 -16.25117 -15.69261 -15.57635 -15.22389 -15.11307 -14.33123 -14.08922 -13.71601 -13.61560 -13.33303 -13.20643 -12.99359 -12.67249 -12.61758 -12.47422 -12.41721 -12.21940 -12.07663 -11.85140 -11.33154 -11.03449 -10.55391 -10.12410 -10.07093 -8.76888 -8.14617 -6.27147 -0.31355 0.39556 1.39049 1.40154 1.53617 1.66007 2.31557 2.41904 2.48263 2.76323 3.13068 3.37393 3.68818 3.93458 4.11022 4.25226 4.38283 4.40907 4.48839 4.49720 4.59813 4.68938 4.72589 4.80737 4.83180 4.91832 4.98889 5.04432 5.14651 5.22926 5.47754 5.51547 5.69333 5.93838 6.22274 6.38697 6.54683 6.77187 6.96930 7.39950 8.91195 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.006128 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.506755 B = 4568.255853 C = 5697.100956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.073 3.927 4 C -0.124 4.124 5 C -0.176 4.176 6 C 0.128 3.872 7 O -0.322 6.322 8 C 0.012 3.988 9 C -0.187 4.187 10 C 0.397 3.603 11 O -0.482 6.482 12 C 0.001 3.999 13 H 0.043 0.957 14 C -0.116 4.116 15 C -0.531 4.531 16 H 0.043 0.957 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.079 4.079 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.177 0.823 28 H 0.174 0.826 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 5.377 -1.387 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.029 3.971 4 C -0.142 4.142 5 C -0.194 4.194 6 C 0.082 3.918 7 O -0.235 6.235 8 C -0.082 4.082 9 C -0.189 4.189 10 C 0.277 3.723 11 O -0.360 6.360 12 C -0.018 4.018 13 H 0.061 0.939 14 C -0.174 4.174 15 C -0.569 4.569 16 H 0.061 0.939 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.098 4.098 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.194 0.806 28 H 0.191 0.809 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.857 5.637 -1.404 20.690 hybrid contribution 0.846 0.101 0.413 0.947 sum -19.011 5.738 -0.991 19.883 Atomic orbital electron populations 1.23404 0.76180 1.05703 1.02585 1.86114 1.23701 1.25968 1.89368 1.18752 0.91249 0.85739 1.01398 1.21597 1.01822 0.90192 1.00586 1.21344 0.91304 1.00350 1.06419 1.19434 0.91992 0.84901 0.95523 1.86324 1.36953 1.12813 1.87434 1.23450 0.96020 0.85921 1.02830 1.20039 0.94847 0.92242 1.11748 1.23039 0.88392 0.91337 0.69544 1.90367 1.75478 1.32466 1.37641 1.19121 0.94798 0.91925 0.95993 0.93947 1.21481 0.99518 1.01769 0.94600 1.21263 1.02226 0.97065 1.36359 0.93903 1.25643 1.01486 0.94705 0.96139 1.69959 1.36633 1.02438 1.45911 0.85511 0.79541 0.77998 0.78657 1.20308 1.19636 1.19892 1.20621 0.92921 0.96614 0.99600 0.86613 0.91229 0.91100 0.80585 0.80878 0.87403 0.90645 0.90783 0.90592 0.94114 0.96081 0.92483 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.79 10.49 -93.40 -0.98 -9.77 16 3 C 0.07 2.13 6.67 22.44 0.15 2.28 16 4 C -0.12 -2.69 9.02 22.41 0.20 -2.49 16 5 C -0.18 -4.19 9.02 22.32 0.20 -3.99 16 6 C 0.13 4.48 6.70 22.90 0.15 4.64 16 7 O -0.32 -11.61 8.56 -68.96 -0.59 -12.20 16 8 C 0.01 0.25 9.81 113.37 1.11 1.36 16 9 C -0.19 -7.81 5.88 -20.08 -0.12 -7.93 16 10 C 0.40 20.40 6.16 27.92 0.17 20.58 16 11 O -0.48 -27.29 14.76 17.90 0.26 -27.03 16 12 C 0.00 0.03 2.07 -12.29 -0.03 0.00 16 13 H 0.04 2.36 6.47 -2.39 -0.02 2.35 16 14 C -0.12 -5.98 8.95 71.98 0.64 -5.34 16 15 C -0.53 -32.29 8.32 25.60 0.21 -32.08 16 16 H 0.04 2.74 7.14 -2.91 -0.02 2.72 16 17 C 0.02 1.13 5.30 84.66 0.45 1.58 16 18 N -0.91 -53.22 11.32 21.45 0.24 -52.98 16 19 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 20 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 C -0.08 -2.93 9.29 22.68 0.21 -2.72 16 24 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 0.73 7.65 -2.38 -0.02 0.72 16 26 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.18 2.17 6.27 -2.91 -0.02 2.15 16 28 H 0.17 2.62 6.29 -2.91 -0.02 2.60 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.20 7.67 -2.38 -0.02 1.18 16 31 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 32 H 0.08 4.17 6.07 -2.39 -0.01 4.16 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.13 5.35 6.36 -2.91 -0.02 5.33 16 Total: -1.00 -76.77 303.09 6.53 -70.24 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.09 Total: 6.29 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.48 Total: -22.78 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.24 Total: -52.98 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.31 Total: -49.00 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.77 6.53 -70.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.214 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds