Wall clock time and date at job start Mon Mar 30 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.39044 * 119.88815 * 359.72695 * 3 2 1 5 5 C 1.38026 * 120.40083 * 179.75992 * 4 3 2 6 6 C 1.38667 * 120.17320 * 0.51388 * 5 4 3 7 7 O 1.35670 * 120.11482 * 179.71987 * 6 5 4 8 8 C 1.42899 * 117.00235 * 0.02562 * 7 6 5 9 9 C 1.40398 * 119.77044 * 359.74428 * 6 5 4 10 10 C 1.46782 * 120.19788 * 179.97438 * 9 6 5 11 11 O 1.21302 * 119.99992 * 0.02562 * 10 9 6 12 12 C 1.50700 * 120.00095 * 180.02562 * 10 9 6 13 13 H 1.09009 * 109.46832 * 35.00594 * 12 10 9 14 14 C 1.52994 * 109.47574 * 275.00399 * 12 10 9 15 15 C 1.50700 * 109.47124 * 154.99931 * 12 10 9 16 16 H 1.08001 * 120.00197 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 12 10 18 18 N 1.31510 * 119.99907 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00024 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46986 * 60.00375 * 19 17 15 21 21 H 1.48497 * 109.46833 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46854 * 300.00153 * 19 17 15 23 23 C 1.38129 * 119.88393 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47144 * 59.99818 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47043 * 300.00220 * 1 2 3 27 27 H 1.07996 * 119.79731 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.91014 * 180.25529 * 5 4 3 29 29 H 1.08998 * 109.46705 * 60.00002 * 8 7 6 30 30 H 1.08994 * 109.47230 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46993 * 300.00552 * 8 7 6 32 32 H 1.08999 * 109.47587 * 179.97438 * 14 12 10 33 33 H 1.09001 * 109.47483 * 300.00003 * 14 12 10 34 34 H 1.09006 * 109.47356 * 60.00105 * 14 12 10 35 35 H 0.96994 * 120.00188 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.08775 * 359.96179 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2867 2.3763 -0.0057 5 6 1.9022 3.6118 -0.0008 6 6 3.2860 3.7010 -0.0008 7 8 3.8898 4.9160 -0.0017 8 6 3.0383 6.0636 -0.0020 9 6 4.0601 2.5297 -0.0004 10 6 5.5256 2.6133 -0.0010 11 8 6.0713 3.6966 -0.0013 12 6 6.3522 1.3532 -0.0012 13 1 5.8473 0.5876 -0.5905 14 6 6.5273 0.8579 1.4357 15 6 7.7042 1.6394 -0.6022 16 1 7.9413 2.6344 -0.9490 17 6 8.6384 0.6311 -0.7094 18 7 8.3495 -0.5806 -0.2876 19 14 10.3146 0.9860 -1.4538 20 1 11.0024 2.0283 -0.6501 21 1 11.1286 -0.2560 -1.4552 22 1 10.1449 1.4677 -2.8482 23 6 3.4259 1.2813 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2086 2.3138 -0.0098 28 1 1.3045 4.5112 -0.0012 29 1 2.4095 6.0496 0.8882 30 1 3.6471 6.9677 -0.0023 31 1 2.4088 6.0487 -0.8917 32 1 7.1248 -0.0538 1.4356 33 1 7.0321 1.6234 2.0250 34 1 5.5494 0.6508 1.8705 35 1 9.0066 -1.2900 -0.3633 36 1 4.0137 0.3754 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048259130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:25 Heat of formation + Delta-G solvation = -83.612397 kcal Electronic energy + Delta-G solvation = -19973.582295 eV Core-core repulsion = 16810.157205 eV Total energy + Delta-G solvation = -3163.425090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39838 -38.92078 -37.93814 -35.95406 -33.68351 -31.53217 -30.05119 -29.60257 -27.37358 -26.81350 -25.09023 -24.06348 -22.30116 -21.30247 -19.10511 -17.76236 -17.20192 -16.68495 -15.96137 -15.77922 -15.43361 -15.07464 -14.61586 -14.49976 -14.11639 -13.66843 -13.37280 -12.80306 -12.77196 -12.42667 -12.27111 -12.19157 -11.55418 -11.49184 -11.38170 -10.95242 -10.83344 -10.64294 -10.57548 -10.31636 -10.15704 -9.97325 -8.91592 -8.80852 -8.41504 -8.15941 -7.58463 -5.95929 -4.00116 1.03454 1.60692 3.23201 3.32464 3.40176 3.42533 3.48212 3.52691 4.17312 4.48623 4.70870 4.76058 5.00095 5.08414 5.10202 5.16685 5.19664 5.36062 5.38438 5.42881 5.53192 5.60901 5.93922 6.06800 6.19995 6.37410 6.66390 6.71009 6.84012 7.00202 7.09923 7.41749 7.58133 7.66418 7.85428 8.09115 8.34914 8.81417 9.04762 9.64019 11.11059 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.006105 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.772141 B = 4585.210588 C = 5740.074437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.072 3.928 4 C -0.149 4.149 5 C -0.192 4.192 6 C 0.137 3.863 7 O -0.282 6.282 8 C 0.024 3.976 9 C -0.148 4.148 10 C 0.396 3.604 11 O -0.441 6.441 12 C 0.007 3.993 13 H 0.052 0.948 14 C -0.129 4.129 15 C -0.504 4.504 16 H 0.067 0.933 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.061 4.061 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.031 0.969 34 H 0.014 0.986 35 H 0.261 0.739 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.501 4.763 1.343 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.028 3.972 4 C -0.168 4.168 5 C -0.211 4.211 6 C 0.090 3.910 7 O -0.194 6.194 8 C -0.072 4.072 9 C -0.150 4.150 10 C 0.272 3.728 11 O -0.315 6.315 12 C -0.012 4.012 13 H 0.070 0.930 14 C -0.187 4.187 15 C -0.542 4.542 16 H 0.085 0.915 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.079 4.079 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.826 5.034 1.356 17.616 hybrid contribution 0.098 0.330 -0.394 0.524 sum -16.728 5.365 0.961 17.594 Atomic orbital electron populations 1.22987 0.79127 1.03663 1.00863 1.86128 1.20668 1.26484 1.89611 1.18769 0.92164 0.84166 1.02130 1.21080 0.99688 0.91711 1.04336 1.20918 0.93030 0.98302 1.08811 1.19280 0.90547 0.85616 0.95518 1.86373 1.34083 1.11469 1.87460 1.23074 0.95710 0.87759 1.00654 1.20496 0.97328 0.89981 1.07148 1.23076 0.86001 0.92869 0.70846 1.90411 1.74148 1.31836 1.35101 1.19131 0.95436 0.90714 0.95915 0.93008 1.21678 0.98574 1.03234 0.95196 1.21061 0.97210 0.96563 1.39387 0.91516 1.24928 0.98665 0.94950 0.95474 1.69856 1.35191 1.01066 1.47213 0.86557 0.83683 0.77396 0.79807 1.20183 1.21345 1.20256 1.20808 0.91202 0.98072 0.97842 0.93026 0.88442 0.93032 0.85356 0.85160 0.93062 0.88293 0.93030 0.88779 0.94962 0.96663 0.92904 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.45 10.49 -19.72 -0.21 -4.66 16 3 C 0.07 1.11 6.67 -39.32 -0.26 0.85 16 4 C -0.15 -1.96 9.02 -39.36 -0.36 -2.32 16 5 C -0.19 -2.67 9.02 -39.50 -0.36 -3.02 16 6 C 0.14 2.45 6.71 -38.61 -0.26 2.19 16 7 O -0.28 -5.11 8.56 -40.66 -0.35 -5.46 16 8 C 0.02 0.28 9.81 101.05 0.99 1.27 16 9 C -0.15 -2.98 5.88 -104.96 -0.62 -3.60 16 10 C 0.40 9.58 6.21 -30.86 -0.19 9.38 16 11 O -0.44 -11.73 14.61 -16.41 -0.24 -11.97 16 12 C 0.01 0.18 1.92 -92.93 -0.18 0.00 16 13 H 0.05 1.35 6.74 -51.92 -0.35 1.00 16 14 C -0.13 -3.16 8.95 37.15 0.33 -2.82 16 15 C -0.50 -14.57 8.33 -34.44 -0.29 -14.85 16 16 H 0.07 2.00 7.03 -52.49 -0.37 1.64 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 19 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.06 -1.10 9.29 -38.95 -0.36 -1.46 16 24 H 0.05 0.40 7.64 -51.93 -0.40 0.00 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 28 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.15 2.87 6.47 -52.49 -0.34 2.53 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -33.06 303.14 -5.72 -38.78 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.45 Total: -1.89 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.65 Total: -11.52 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.90 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.79 Total: -22.09 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.06 -5.72 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.833 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds