Wall clock time and date at job start Mon Mar 30 2020 06:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.39044 * 119.88815 * 359.72695 * 3 2 1 5 5 C 1.38026 * 120.40083 * 179.75992 * 4 3 2 6 6 C 1.38667 * 120.17320 * 0.51388 * 5 4 3 7 7 O 1.35670 * 120.11482 * 179.71987 * 6 5 4 8 8 C 1.42899 * 117.00235 * 0.02562 * 7 6 5 9 9 C 1.40398 * 119.77044 * 359.74428 * 6 5 4 10 10 C 1.46782 * 120.19788 * 179.97438 * 9 6 5 11 11 O 1.21302 * 119.99992 * 0.02562 * 10 9 6 12 12 C 1.50700 * 120.00095 * 180.02562 * 10 9 6 13 13 H 1.09009 * 109.46832 * 35.00594 * 12 10 9 14 14 C 1.52994 * 109.47574 * 275.00399 * 12 10 9 15 15 C 1.50700 * 109.47124 * 154.99931 * 12 10 9 16 16 H 1.08001 * 120.00197 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 12 10 18 18 N 1.31510 * 119.99907 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00024 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46986 * 60.00375 * 19 17 15 21 21 H 1.48497 * 109.46833 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46854 * 300.00153 * 19 17 15 23 23 C 1.38129 * 119.88393 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47144 * 59.99818 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47043 * 300.00220 * 1 2 3 27 27 H 1.07996 * 119.79731 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.91014 * 180.25529 * 5 4 3 29 29 H 1.08998 * 109.46705 * 60.00002 * 8 7 6 30 30 H 1.08994 * 109.47230 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46993 * 300.00552 * 8 7 6 32 32 H 1.08999 * 109.47587 * 179.97438 * 14 12 10 33 33 H 1.09001 * 109.47483 * 300.00003 * 14 12 10 34 34 H 1.09006 * 109.47356 * 60.00105 * 14 12 10 35 35 H 0.96994 * 120.00188 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.08775 * 359.96179 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2867 2.3763 -0.0057 5 6 1.9022 3.6118 -0.0008 6 6 3.2860 3.7010 -0.0008 7 8 3.8898 4.9160 -0.0017 8 6 3.0383 6.0636 -0.0020 9 6 4.0601 2.5297 -0.0004 10 6 5.5256 2.6133 -0.0010 11 8 6.0713 3.6966 -0.0013 12 6 6.3522 1.3532 -0.0012 13 1 5.8473 0.5876 -0.5905 14 6 6.5273 0.8579 1.4357 15 6 7.7042 1.6394 -0.6022 16 1 7.9413 2.6344 -0.9490 17 6 8.6384 0.6311 -0.7094 18 7 8.3495 -0.5806 -0.2876 19 14 10.3146 0.9860 -1.4538 20 1 11.0024 2.0283 -0.6501 21 1 11.1286 -0.2560 -1.4552 22 1 10.1449 1.4677 -2.8482 23 6 3.4259 1.2813 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2086 2.3138 -0.0098 28 1 1.3045 4.5112 -0.0012 29 1 2.4095 6.0496 0.8882 30 1 3.6471 6.9677 -0.0023 31 1 2.4088 6.0487 -0.8917 32 1 7.1248 -0.0538 1.4356 33 1 7.0321 1.6234 2.0250 34 1 5.5494 0.6508 1.8705 35 1 9.0066 -1.2900 -0.3633 36 1 4.0137 0.3754 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048259130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:24 Heat of formation + Delta-G solvation = -104.422161 kcal Electronic energy + Delta-G solvation = -19974.484674 eV Core-core repulsion = 16810.157205 eV Total energy + Delta-G solvation = -3164.327469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65913 -40.11287 -39.58503 -37.16646 -35.78058 -33.14539 -31.81639 -30.72108 -28.30397 -27.73708 -27.26089 -25.65381 -23.76300 -22.66872 -20.65192 -19.07764 -18.45192 -18.32585 -17.64014 -16.88916 -16.80295 -16.39957 -16.23826 -15.69656 -15.57903 -15.23514 -15.12015 -14.31846 -14.08541 -13.71575 -13.61625 -13.32079 -13.19900 -12.98897 -12.66254 -12.63656 -12.46768 -12.41425 -12.21225 -12.05267 -11.84718 -11.33064 -11.04921 -10.54921 -10.12046 -10.07036 -8.76785 -8.13822 -6.26342 -0.31210 0.39661 1.40060 1.42548 1.50726 1.65865 2.31651 2.42123 2.48377 2.76322 3.13993 3.37520 3.69010 3.93606 4.11104 4.25408 4.38404 4.40930 4.49040 4.49817 4.60041 4.69416 4.72870 4.80816 4.83274 4.91073 4.99968 5.04330 5.15047 5.22713 5.47816 5.51887 5.70106 5.94537 6.23002 6.38818 6.54771 6.77886 6.97418 7.40715 8.91681 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.006105 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.772141 B = 4585.210588 C = 5740.074437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.073 3.927 4 C -0.124 4.124 5 C -0.176 4.176 6 C 0.128 3.872 7 O -0.322 6.322 8 C 0.012 3.988 9 C -0.187 4.187 10 C 0.396 3.604 11 O -0.481 6.481 12 C 0.002 3.998 13 H 0.042 0.958 14 C -0.115 4.115 15 C -0.534 4.534 16 H 0.044 0.956 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.078 4.078 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.177 0.823 28 H 0.174 0.826 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.020 0.980 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.606 5.345 1.248 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.029 3.971 4 C -0.142 4.142 5 C -0.194 4.194 6 C 0.081 3.919 7 O -0.235 6.235 8 C -0.082 4.082 9 C -0.188 4.188 10 C 0.276 3.724 11 O -0.359 6.359 12 C -0.017 4.017 13 H 0.060 0.940 14 C -0.173 4.173 15 C -0.572 4.572 16 H 0.063 0.937 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.097 4.097 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.089 0.911 27 H 0.194 0.806 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.961 5.597 1.264 20.770 hybrid contribution 0.872 0.133 -0.362 0.954 sum -19.089 5.730 0.902 19.951 Atomic orbital electron populations 1.23401 0.76189 1.05700 1.02580 1.86116 1.23692 1.25960 1.89371 1.18754 0.91256 0.85735 1.01403 1.21596 1.01819 0.90196 1.00590 1.21344 0.91306 1.00347 1.06424 1.19435 0.91991 0.84904 0.95530 1.86320 1.36958 1.12814 1.87433 1.23446 0.96018 0.85922 1.02825 1.20033 0.94825 0.92238 1.11744 1.23048 0.88382 0.91356 0.69606 1.90366 1.75459 1.32465 1.37577 1.19095 0.94695 0.91847 0.96100 0.94037 1.21484 0.99522 1.01671 0.94647 1.21239 0.99282 0.95907 1.40774 0.93739 1.25641 1.01938 0.94730 0.95644 1.69947 1.36273 1.01521 1.47202 0.85630 0.79504 0.77681 0.78955 1.20196 1.19726 1.19874 1.20609 0.92908 0.96600 0.99600 0.91227 0.86614 0.91117 0.80597 0.80893 0.90662 0.87406 0.90779 0.90632 0.96106 0.93983 0.92489 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.75 10.49 -93.49 -0.98 -9.73 16 3 C 0.07 2.12 6.67 22.44 0.15 2.27 16 4 C -0.12 -2.68 9.02 22.41 0.20 -2.48 16 5 C -0.18 -4.18 9.02 22.32 0.20 -3.98 16 6 C 0.13 4.47 6.71 22.90 0.15 4.62 16 7 O -0.32 -11.59 8.56 -68.89 -0.59 -12.18 16 8 C 0.01 0.25 9.81 113.37 1.11 1.36 16 9 C -0.19 -7.77 5.88 -20.08 -0.12 -7.89 16 10 C 0.40 20.34 6.21 27.92 0.17 20.51 16 11 O -0.48 -27.22 14.61 17.89 0.26 -26.96 16 12 C 0.00 0.08 1.92 -12.29 -0.02 0.06 16 13 H 0.04 2.32 6.74 -2.38 -0.02 2.31 16 14 C -0.12 -5.93 8.95 71.98 0.64 -5.29 16 15 C -0.53 -32.49 8.33 25.60 0.21 -32.27 16 16 H 0.04 2.84 7.03 -2.91 -0.02 2.82 16 17 C 0.02 1.15 5.30 84.66 0.45 1.60 16 18 N -0.91 -53.31 11.32 21.45 0.24 -53.06 16 19 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.08 -2.90 9.29 22.68 0.21 -2.69 16 24 H 0.07 0.73 7.64 -2.39 -0.02 0.71 16 25 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 27 H 0.18 2.16 6.27 -2.91 -0.02 2.14 16 28 H 0.17 2.61 6.29 -2.91 -0.02 2.59 16 29 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.19 7.66 -2.39 -0.02 1.18 16 32 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 33 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.13 5.32 6.47 -2.91 -0.02 5.31 16 Total: -1.00 -76.64 303.14 6.53 -70.11 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.09 Total: 6.39 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.48 Total: -22.85 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.24 Total: -53.06 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -1.31 Total: -48.87 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -76.64 6.53 -70.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.314 kcal (2) G-P(sol) polarization free energy of solvation -76.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds