Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35902 * 117.00304 * 2 1 4 4 C 1.38772 * 119.93899 * 0.02562 * 3 2 1 5 5 C 1.38774 * 120.24825 * 180.02562 * 4 3 2 6 6 O 1.35903 * 119.94372 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99947 * 0.02562 * 6 5 4 8 8 C 1.38448 * 120.11762 * 359.97438 * 5 4 3 9 9 C 1.39787 * 119.87600 * 359.97438 * 8 5 4 10 10 C 1.47196 * 120.11943 * 179.97438 * 9 8 5 11 11 O 1.21254 * 119.99783 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00238 * 179.97438 * 10 9 8 13 13 H 1.09004 * 109.47168 * 35.00013 * 12 10 9 14 14 C 1.52996 * 109.47485 * 275.00286 * 12 10 9 15 15 C 1.50699 * 109.47490 * 155.00001 * 12 10 9 16 16 H 1.08006 * 119.99640 * 35.07995 * 15 12 10 17 17 C 1.37879 * 120.00319 * 215.09029 * 15 12 10 18 18 N 1.31516 * 119.99879 * 184.91596 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.90205 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.38446 * 119.94053 * 180.26079 * 3 2 1 24 24 H 1.09003 * 109.47374 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47381 * 299.99444 * 1 2 3 26 26 H 1.09002 * 109.47757 * 59.99788 * 1 2 3 27 27 H 1.08007 * 119.87801 * 0.02562 * 4 3 2 28 28 H 1.09003 * 109.47230 * 59.99899 * 7 6 5 29 29 H 1.09003 * 109.47076 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46985 * 299.99924 * 7 6 5 31 31 H 1.07999 * 120.06122 * 180.02562 * 8 5 4 32 32 H 1.09000 * 109.47276 * 295.02790 * 14 12 10 33 33 H 1.08998 * 109.47555 * 175.03427 * 14 12 10 34 34 H 1.09000 * 109.47584 * 55.03267 * 14 12 10 35 35 H 0.96997 * 119.99729 * 179.97438 * 18 17 15 36 36 H 1.07992 * 120.06102 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2890 2.3739 0.0005 5 6 1.9124 3.6138 0.0000 6 8 1.1650 4.7488 0.0000 7 6 -0.2552 4.5905 0.0011 8 6 3.2944 3.6965 -0.0005 9 6 4.0618 2.5281 0.0000 10 6 5.5315 2.6098 -0.0011 11 8 6.0786 3.6919 -0.0021 12 6 6.3563 1.3486 0.0000 13 1 5.8502 0.5829 -0.5880 14 6 6.5312 0.8548 1.4375 15 6 7.7086 1.6320 -0.6017 16 1 8.1821 2.5890 -0.4392 17 6 8.3412 0.6697 -1.3600 18 7 9.5611 0.8796 -1.8042 19 14 7.4656 -0.9321 -1.7560 20 1 6.6116 -0.7458 -2.9564 21 1 8.4703 -1.9925 -2.0230 22 1 6.6188 -1.3315 -0.6032 23 6 3.4286 1.2818 -0.0055 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 0.2106 2.3140 0.0014 28 1 -0.5587 4.0399 0.8916 29 1 -0.7302 5.5716 0.0006 30 1 -0.5600 4.0391 -0.8884 31 1 3.7786 4.6618 -0.0005 32 1 7.1143 1.5817 2.0030 33 1 7.0515 -0.1030 1.4320 34 1 5.5525 0.7339 1.9019 35 1 10.0063 0.2025 -2.3373 36 1 4.0167 0.3761 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048259138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = -86.080885 kcal Electronic energy + Delta-G solvation = -19821.088976 eV Core-core repulsion = 16657.556844 eV Total energy + Delta-G solvation = -3163.532132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61493 -38.90782 -38.71367 -36.10760 -33.72846 -31.52742 -30.34149 -30.17327 -28.19192 -26.70209 -25.25215 -24.25906 -22.43030 -21.40428 -19.43135 -17.77997 -17.08169 -16.96745 -16.09882 -15.99553 -15.86399 -15.62926 -15.00207 -14.77613 -14.60115 -13.71511 -13.64373 -13.11328 -12.67221 -12.51069 -12.45619 -12.26603 -12.14839 -11.76226 -11.45750 -11.42273 -11.20148 -11.07824 -10.71324 -10.55598 -10.25823 -9.79113 -9.12131 -8.71833 -8.68527 -8.48455 -7.99466 -6.06894 -4.07402 0.89281 1.50347 3.00514 3.08636 3.14773 3.28356 3.35241 3.36755 4.01437 4.40087 4.57190 4.72171 4.80975 4.89588 4.92094 4.95368 5.07702 5.13472 5.20807 5.24177 5.28334 5.48801 5.63599 6.11237 6.16016 6.23184 6.26464 6.48649 6.51611 6.59986 6.64475 6.95703 7.07785 7.23058 7.41486 7.62340 8.38102 8.57247 9.07094 9.52896 11.06068 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.005942 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.324528 B = 4710.889122 C = 5551.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.149 3.851 4 C -0.280 4.280 5 C 0.149 3.851 6 O -0.313 6.313 7 C 0.027 3.973 8 C -0.137 4.137 9 C -0.076 4.076 10 C 0.403 3.597 11 O -0.439 6.439 12 C -0.027 4.027 13 H 0.055 0.945 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.087 0.913 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.867 3.133 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.140 4.140 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.134 0.866 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.518 -0.143 4.243 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.104 3.896 4 C -0.299 4.299 5 C 0.104 3.896 6 O -0.226 6.226 7 C -0.068 4.068 8 C -0.156 4.156 9 C -0.078 4.078 10 C 0.278 3.722 11 O -0.312 6.312 12 C -0.046 4.046 13 H 0.073 0.927 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.105 0.895 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.694 3.306 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.159 4.159 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.918 0.367 4.129 22.307 hybrid contribution -1.077 -1.032 -0.391 1.542 sum -22.995 -0.665 3.738 23.306 Atomic orbital electron populations 1.23042 0.78734 1.03930 1.01087 1.86123 1.21097 1.26610 1.88662 1.18595 0.91886 0.83577 0.95534 1.21329 1.00267 0.92008 1.16308 1.18575 0.90867 0.84523 0.95681 1.86115 1.18681 1.29110 1.88715 1.23041 0.78863 1.03758 1.01118 1.20629 0.89896 0.99899 1.05134 1.20742 0.96970 0.91787 0.98267 1.23161 0.85975 0.92616 0.70444 1.90403 1.74222 1.31858 1.34701 1.19579 0.97034 0.92050 0.95936 0.92701 1.21883 0.99080 1.01397 0.96615 1.20848 0.99431 1.03135 1.31086 0.89494 1.25025 0.94688 0.97900 0.95192 1.69891 1.12165 1.35112 1.35980 0.87005 0.79993 0.84029 0.79587 1.19900 1.21211 1.18583 1.20767 0.91078 0.98715 1.05356 0.88155 0.92820 0.92812 0.84857 0.92813 0.88182 0.92799 0.83961 0.92788 0.92507 0.95123 0.92507 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.10 10.49 -19.43 -0.20 -4.31 16 3 C 0.15 2.20 6.68 -39.31 -0.26 1.93 16 4 C -0.28 -3.64 8.02 -39.19 -0.31 -3.95 16 5 C 0.15 2.19 6.68 -39.31 -0.26 1.93 16 6 O -0.31 -4.08 10.49 -19.43 -0.20 -4.29 16 7 C 0.03 0.22 9.81 101.05 0.99 1.21 16 8 C -0.14 -2.36 9.53 -38.93 -0.37 -2.73 16 9 C -0.08 -1.43 5.87 -105.10 -0.62 -2.05 16 10 C 0.40 9.05 6.22 -30.67 -0.19 8.86 16 11 O -0.44 -11.04 15.92 5.58 0.09 -10.95 16 12 C -0.03 -0.63 1.60 -92.93 -0.15 -0.78 16 13 H 0.06 1.25 3.87 -51.93 -0.20 1.05 16 14 C -0.13 -2.75 9.16 37.16 0.34 -2.41 16 15 C -0.51 -14.53 8.55 -34.44 -0.29 -14.82 16 16 H 0.09 2.80 7.50 -52.48 -0.39 2.41 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.87 20.96 26.99 -169.99 -4.59 16.37 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.26 -5.84 6.82 56.52 0.39 -5.46 16 23 C -0.14 -2.39 9.30 -38.92 -0.36 -2.75 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.13 1.28 4.48 -52.48 -0.24 1.05 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 31 H 0.14 2.50 7.64 -52.49 -0.40 2.10 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.15 2.47 6.46 -52.49 -0.34 2.13 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -33.28 305.17 -4.56 -37.84 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.42 Total: -0.28 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.60 Total: -12.31 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.32 Total: -19.54 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.59 Total: 16.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.28 -4.56 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.239 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds