Wall clock time and date at job start Mon Mar 30 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35902 * 117.00304 * 2 1 4 4 C 1.38772 * 119.93899 * 0.02562 * 3 2 1 5 5 C 1.38774 * 120.24825 * 180.02562 * 4 3 2 6 6 O 1.35903 * 119.94372 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99947 * 0.02562 * 6 5 4 8 8 C 1.38448 * 120.11762 * 359.97438 * 5 4 3 9 9 C 1.39787 * 119.87600 * 359.97438 * 8 5 4 10 10 C 1.47196 * 120.11943 * 179.97438 * 9 8 5 11 11 O 1.21254 * 119.99783 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00238 * 179.97438 * 10 9 8 13 13 H 1.09004 * 109.47168 * 35.00013 * 12 10 9 14 14 C 1.52996 * 109.47485 * 275.00286 * 12 10 9 15 15 C 1.50699 * 109.47490 * 155.00001 * 12 10 9 16 16 H 1.08006 * 119.99640 * 35.07995 * 15 12 10 17 17 C 1.37879 * 120.00319 * 215.09029 * 15 12 10 18 18 N 1.31516 * 119.99879 * 184.91596 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.90205 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.38446 * 119.94053 * 180.26079 * 3 2 1 24 24 H 1.09003 * 109.47374 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47381 * 299.99444 * 1 2 3 26 26 H 1.09002 * 109.47757 * 59.99788 * 1 2 3 27 27 H 1.08007 * 119.87801 * 0.02562 * 4 3 2 28 28 H 1.09003 * 109.47230 * 59.99899 * 7 6 5 29 29 H 1.09003 * 109.47076 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46985 * 299.99924 * 7 6 5 31 31 H 1.07999 * 120.06122 * 180.02562 * 8 5 4 32 32 H 1.09000 * 109.47276 * 295.02790 * 14 12 10 33 33 H 1.08998 * 109.47555 * 175.03427 * 14 12 10 34 34 H 1.09000 * 109.47584 * 55.03267 * 14 12 10 35 35 H 0.96997 * 119.99729 * 179.97438 * 18 17 15 36 36 H 1.07992 * 120.06102 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2890 2.3739 0.0005 5 6 1.9124 3.6138 0.0000 6 8 1.1650 4.7488 0.0000 7 6 -0.2552 4.5905 0.0011 8 6 3.2944 3.6965 -0.0005 9 6 4.0618 2.5281 0.0000 10 6 5.5315 2.6098 -0.0011 11 8 6.0786 3.6919 -0.0021 12 6 6.3563 1.3486 0.0000 13 1 5.8502 0.5829 -0.5880 14 6 6.5312 0.8548 1.4375 15 6 7.7086 1.6320 -0.6017 16 1 8.1821 2.5890 -0.4392 17 6 8.3412 0.6697 -1.3600 18 7 9.5611 0.8796 -1.8042 19 14 7.4656 -0.9321 -1.7560 20 1 6.6116 -0.7458 -2.9564 21 1 8.4703 -1.9925 -2.0230 22 1 6.6188 -1.3315 -0.6032 23 6 3.4286 1.2818 -0.0055 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 0.2106 2.3140 0.0014 28 1 -0.5587 4.0399 0.8916 29 1 -0.7302 5.5716 0.0006 30 1 -0.5600 4.0391 -0.8884 31 1 3.7786 4.6618 -0.0005 32 1 7.1143 1.5817 2.0030 33 1 7.0515 -0.1030 1.4320 34 1 5.5525 0.7339 1.9019 35 1 10.0063 0.2025 -2.3373 36 1 4.0167 0.3761 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048259138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:27 Heat of formation + Delta-G solvation = -109.370984 kcal Electronic energy + Delta-G solvation = -19822.098910 eV Core-core repulsion = 16657.556844 eV Total energy + Delta-G solvation = -3164.542067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74805 -40.33906 -39.84192 -37.32104 -35.72835 -33.51451 -31.55600 -31.34643 -28.92724 -27.47363 -27.27909 -25.79396 -23.60217 -22.88055 -20.73909 -19.37766 -18.88155 -18.03032 -17.24635 -17.15103 -16.96474 -16.49482 -16.40863 -16.36107 -15.67390 -15.49324 -15.34033 -14.52595 -14.21983 -14.06804 -13.53682 -13.41096 -13.26126 -13.08025 -12.97105 -12.59754 -12.47611 -12.31195 -12.23596 -12.14003 -11.76052 -11.56101 -11.21399 -10.77144 -10.38448 -9.82753 -9.13322 -8.29031 -6.36774 -0.43442 0.32841 1.37078 1.38461 1.48626 1.51829 2.14396 2.26918 2.35515 2.67656 3.02256 3.26036 3.79735 3.88476 3.92481 4.15593 4.31206 4.34892 4.38318 4.39822 4.41100 4.42434 4.60832 4.72885 4.76350 4.76771 4.87013 5.01680 5.04109 5.13324 5.28027 5.37133 5.50283 5.58630 6.13925 6.25956 6.42846 6.72160 6.74904 7.27695 8.88456 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.005942 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.324528 B = 4710.889122 C = 5551.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.158 3.842 4 C -0.259 4.259 5 C 0.157 3.843 6 O -0.330 6.330 7 C 0.013 3.987 8 C -0.157 4.157 9 C -0.094 4.094 10 C 0.403 3.597 11 O -0.486 6.486 12 C -0.031 4.031 13 H 0.073 0.927 14 C -0.126 4.126 15 C -0.520 4.520 16 H 0.027 0.973 17 C 0.012 3.988 18 N -0.948 5.948 19 Si 0.937 3.063 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.225 1.225 23 C -0.151 4.151 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.176 0.824 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.268 0.732 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.445 -2.453 4.620 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.112 3.888 4 C -0.278 4.278 5 C 0.111 3.889 6 O -0.244 6.244 7 C -0.081 4.081 8 C -0.176 4.176 9 C -0.096 4.096 10 C 0.282 3.718 11 O -0.363 6.363 12 C -0.050 4.050 13 H 0.091 0.909 14 C -0.184 4.184 15 C -0.558 4.558 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.588 5.588 19 Si 0.759 3.241 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.147 1.147 23 C -0.170 4.170 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.193 0.807 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.893 -1.945 4.530 27.341 hybrid contribution 0.296 -0.209 -0.491 0.610 sum -26.598 -2.154 4.039 26.989 Atomic orbital electron populations 1.23482 0.75885 1.06150 1.02670 1.86122 1.23979 1.25539 1.88130 1.18527 0.91185 0.84852 0.94216 1.21657 1.02197 0.90407 1.13509 1.18486 0.90008 0.85882 0.94564 1.86115 1.21371 1.28631 1.88258 1.23482 0.75910 1.05966 1.02750 1.20533 0.91601 0.98705 1.06745 1.20174 0.94271 0.93452 1.01674 1.23297 0.88224 0.91398 0.68907 1.90382 1.75590 1.33028 1.37267 1.19606 0.94546 0.93395 0.97475 0.90918 1.21779 1.01078 1.00937 0.94620 1.20979 1.01897 1.00973 1.31942 0.95458 1.26032 0.95289 1.02503 0.94646 1.70068 1.14367 1.37009 1.37318 0.85881 0.79217 0.78214 0.80805 1.18873 1.20819 1.14710 1.20718 0.92608 0.97536 1.06157 0.85919 0.91017 0.91279 0.80734 0.90949 0.86015 0.91157 0.85794 0.94299 0.91938 0.91325 0.92270 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -7.04 10.49 -92.44 -0.97 -8.01 16 3 C 0.16 4.07 6.68 22.45 0.15 4.22 16 4 C -0.26 -5.62 8.02 22.53 0.18 -5.44 16 5 C 0.16 4.25 6.68 22.45 0.15 4.40 16 6 O -0.33 -7.76 10.49 -92.46 -0.97 -8.73 16 7 C 0.01 0.15 9.81 113.37 1.11 1.26 16 8 C -0.16 -5.46 9.53 22.69 0.22 -5.24 16 9 C -0.09 -3.56 5.87 -20.17 -0.12 -3.68 16 10 C 0.40 18.88 6.22 28.04 0.17 19.06 16 11 O -0.49 -26.39 15.92 -2.95 -0.05 -26.44 16 12 C -0.03 -1.48 1.60 -12.29 -0.02 -1.50 16 13 H 0.07 3.21 3.87 -2.38 -0.01 3.20 16 14 C -0.13 -5.21 9.16 71.98 0.66 -4.55 16 15 C -0.52 -31.40 8.55 25.60 0.22 -31.18 16 16 H 0.03 1.91 7.50 -2.91 -0.02 1.89 16 17 C 0.01 0.74 5.47 84.65 0.46 1.20 16 18 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 19 Si 0.94 42.87 26.99 68.60 1.85 44.72 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.22 -8.90 6.82 99.48 0.68 -8.22 16 23 C -0.15 -4.84 9.30 22.70 0.21 -4.63 16 24 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.54 7.65 -2.38 -0.02 0.52 16 26 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 27 H 0.18 2.25 4.48 -2.91 -0.01 2.24 16 28 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.61 7.65 -2.38 -0.02 0.59 16 31 H 0.12 4.64 7.64 -2.91 -0.02 4.62 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 36 H 0.14 4.54 6.46 -2.91 -0.02 4.52 16 Total: -1.00 -78.89 305.17 5.74 -73.15 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.07 Total: 10.77 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.51 Total: -24.83 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.30 Total: -60.64 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.99 Total: -43.17 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.85 Total: 44.72 kcal Total: -78.89 5.74 -73.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.222 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds