Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99919 * 2 1 4 4 C 1.38756 * 120.05325 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.94207 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05338 * 359.74675 * 5 4 3 7 7 C 1.38241 * 120.11314 * 0.50737 * 6 5 4 8 8 C 1.50707 * 119.97167 * 179.76833 * 7 6 5 9 9 O 1.45202 * 109.46995 * 269.72304 * 8 7 6 10 10 C 1.34228 * 117.00107 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99844 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00316 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46871 * 59.99983 * 12 10 9 14 14 C 1.53000 * 109.47177 * 300.00594 * 12 10 9 15 15 C 1.50694 * 109.47166 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38170 * 120.05503 * 359.49281 * 7 6 5 24 24 H 1.09006 * 109.46910 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47511 * 300.00009 * 1 2 3 26 26 H 1.09002 * 109.47201 * 59.99819 * 1 2 3 27 27 H 1.08001 * 120.03276 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96840 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.94369 * 180.27884 * 6 5 4 30 30 H 1.09001 * 109.46984 * 149.72695 * 8 7 6 31 31 H 1.08998 * 109.47262 * 29.72123 * 8 7 6 32 32 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 33 33 H 1.09002 * 109.47106 * 299.99721 * 14 12 10 34 34 H 1.08998 * 109.47089 * 59.99668 * 14 12 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.02331 * 180.22904 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0559 2.5172 0.0005 8 6 5.5607 2.5983 0.0011 9 8 6.0445 2.6247 -1.3678 10 6 7.3733 2.6969 -1.5432 11 8 8.1079 2.7363 -0.5848 12 6 7.9489 2.7289 -2.9356 13 1 7.5653 3.5997 -3.4674 14 6 7.5458 1.4564 -3.6834 15 6 9.4515 2.8098 -2.8562 16 1 9.9410 2.8350 -1.8938 17 6 10.2017 2.8515 -4.0124 18 7 9.6059 2.8202 -5.1844 19 14 12.0644 2.9525 -3.9139 20 1 12.6316 2.9839 -5.2860 21 1 12.4555 4.1873 -3.1877 22 1 12.5869 1.7659 -3.1898 23 6 3.4310 1.2849 0.0000 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.2127 2.3204 0.0005 28 1 1.3338 4.5114 0.0019 29 1 3.7921 4.6381 0.0113 30 1 5.9713 1.7290 0.5148 31 1 5.8755 3.5064 0.5152 32 1 7.9618 1.4797 -4.6906 33 1 7.9293 0.5856 -3.1517 34 1 6.4590 1.3975 -3.7408 35 1 10.1336 2.8500 -5.9977 36 1 4.0206 0.3800 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -106.122666 kcal Electronic energy + Delta-G solvation = -19150.837850 eV Core-core repulsion = 15986.436641 eV Total energy + Delta-G solvation = -3164.401209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30556 -39.49185 -37.68404 -35.63759 -33.85868 -31.97933 -30.66155 -30.38626 -27.58537 -26.28933 -25.17474 -23.00333 -22.61381 -21.15984 -19.76193 -18.00373 -16.69137 -16.48247 -16.13579 -16.03153 -15.89439 -15.56982 -15.31012 -14.44677 -13.98916 -13.81854 -13.26549 -12.96657 -12.80136 -12.52656 -12.17433 -12.01609 -11.58758 -11.49352 -11.22610 -11.01441 -10.95039 -10.76758 -10.66880 -10.31995 -10.04647 -10.02884 -9.27574 -9.03106 -8.87610 -8.42551 -8.30738 -6.08425 -4.14000 1.10922 1.35847 3.06634 3.32095 3.34865 3.36300 3.37047 3.44985 3.97819 4.43707 4.62929 4.69200 4.87107 4.90077 4.97376 5.17564 5.21282 5.24784 5.25810 5.38096 5.60564 5.64732 5.92342 6.15663 6.17805 6.30437 6.52143 6.62021 6.69967 6.90746 6.91699 7.23931 7.24768 7.46653 7.76730 7.96763 8.16489 8.86528 8.95542 9.51351 10.98925 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.003648 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.131551 B = 7673.888995 C = 7920.014529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.121 3.879 4 C -0.204 4.204 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.046 4.046 8 C 0.101 3.899 9 O -0.359 6.359 10 C 0.465 3.535 11 O -0.518 6.518 12 C 0.058 3.942 13 H 0.064 0.936 14 C -0.133 4.133 15 C -0.514 4.514 16 H 0.075 0.925 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.128 4.128 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 -1.729 8.867 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.077 3.923 4 C -0.223 4.223 5 C -0.102 4.102 6 C -0.151 4.151 7 C -0.046 4.046 8 C 0.027 3.973 9 O -0.278 6.278 10 C 0.310 3.690 11 O -0.405 6.405 12 C 0.039 3.961 13 H 0.082 0.918 14 C -0.191 4.191 15 C -0.552 4.552 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.733 3.267 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.146 4.146 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.174 -1.914 8.987 20.364 hybrid contribution 0.659 0.204 0.150 0.706 sum -17.514 -1.710 9.137 19.828 Atomic orbital electron populations 1.23041 0.78535 1.03867 1.01261 1.86083 1.21250 1.26911 1.88849 1.18942 0.92148 0.84191 0.97060 1.21240 0.99896 0.92444 1.08736 1.20903 0.94397 0.97021 0.97899 1.21033 0.93743 0.98187 1.02182 1.19410 0.94222 0.92604 0.98340 1.21619 0.89146 1.02989 0.83550 1.86704 1.27197 1.84787 1.29065 1.25394 0.78368 0.70261 0.95010 1.90495 1.60145 1.46096 1.43716 1.18761 0.96052 0.97984 0.83263 0.91802 1.21731 0.97223 0.96208 1.03961 1.21106 0.88955 1.51205 0.93897 0.90673 1.24939 0.99224 0.94746 0.95062 1.69875 1.35683 1.50183 0.97338 0.86429 0.84455 0.78908 0.76911 1.21227 1.20084 1.20080 1.20347 0.91386 0.98359 1.04546 0.88299 0.92768 0.92637 0.85525 0.85559 0.85479 0.90741 0.90618 0.88590 0.94982 0.95730 0.92644 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.73 10.50 -19.42 -0.20 -3.94 16 3 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 4 C -0.20 -2.20 9.04 -39.43 -0.36 -2.56 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 6 C -0.13 -1.69 9.70 -39.56 -0.38 -2.07 16 7 C -0.05 -0.66 5.52 -104.64 -0.58 -1.24 16 8 C 0.10 1.68 5.59 36.01 0.20 1.88 16 9 O -0.36 -7.39 10.11 -39.25 -0.40 -7.79 16 10 C 0.46 11.13 7.25 36.00 0.26 11.39 16 11 O -0.52 -13.31 15.21 -18.75 -0.29 -13.60 16 12 C 0.06 1.51 2.74 -92.93 -0.25 1.25 16 13 H 0.06 1.70 8.14 -51.92 -0.42 1.28 16 14 C -0.13 -3.23 8.90 37.16 0.33 -2.90 16 15 C -0.51 -14.58 8.37 -34.44 -0.29 -14.87 16 16 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 19 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.13 -1.79 9.64 -39.43 -0.38 -2.17 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -31.34 312.21 -6.51 -37.85 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.73 Total: -0.92 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.21 Total: -8.50 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.89 Total: -25.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.34 -6.51 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.269 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds