Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99919 * 2 1 4 4 C 1.38756 * 120.05325 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.94207 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05338 * 359.74675 * 5 4 3 7 7 C 1.38241 * 120.11314 * 0.50737 * 6 5 4 8 8 C 1.50707 * 119.97167 * 179.76833 * 7 6 5 9 9 O 1.45202 * 109.46995 * 269.72304 * 8 7 6 10 10 C 1.34228 * 117.00107 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99844 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00316 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46871 * 59.99983 * 12 10 9 14 14 C 1.53000 * 109.47177 * 300.00594 * 12 10 9 15 15 C 1.50694 * 109.47166 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38170 * 120.05503 * 359.49281 * 7 6 5 24 24 H 1.09006 * 109.46910 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47511 * 300.00009 * 1 2 3 26 26 H 1.09002 * 109.47201 * 59.99819 * 1 2 3 27 27 H 1.08001 * 120.03276 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96840 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.94369 * 180.27884 * 6 5 4 30 30 H 1.09001 * 109.46984 * 149.72695 * 8 7 6 31 31 H 1.08998 * 109.47262 * 29.72123 * 8 7 6 32 32 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 33 33 H 1.09002 * 109.47106 * 299.99721 * 14 12 10 34 34 H 1.08998 * 109.47089 * 59.99668 * 14 12 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.02331 * 180.22904 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0559 2.5172 0.0005 8 6 5.5607 2.5983 0.0011 9 8 6.0445 2.6247 -1.3678 10 6 7.3733 2.6969 -1.5432 11 8 8.1079 2.7363 -0.5848 12 6 7.9489 2.7289 -2.9356 13 1 7.5653 3.5997 -3.4674 14 6 7.5458 1.4564 -3.6834 15 6 9.4515 2.8098 -2.8562 16 1 9.9410 2.8350 -1.8938 17 6 10.2017 2.8515 -4.0124 18 7 9.6059 2.8202 -5.1844 19 14 12.0644 2.9525 -3.9139 20 1 12.6316 2.9839 -5.2860 21 1 12.4555 4.1873 -3.1877 22 1 12.5869 1.7659 -3.1898 23 6 3.4310 1.2849 0.0000 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.2127 2.3204 0.0005 28 1 1.3338 4.5114 0.0019 29 1 3.7921 4.6381 0.0113 30 1 5.9713 1.7290 0.5148 31 1 5.8755 3.5064 0.5152 32 1 7.9618 1.4797 -4.6906 33 1 7.9293 0.5856 -3.1517 34 1 6.4590 1.3975 -3.7408 35 1 10.1336 2.8500 -5.9977 36 1 4.0206 0.3800 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -123.580839 kcal Electronic energy + Delta-G solvation = -19151.594893 eV Core-core repulsion = 15986.436641 eV Total energy + Delta-G solvation = -3165.158252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50309 -40.96785 -38.68810 -37.31065 -35.92759 -33.17903 -32.46884 -31.42161 -28.33766 -27.47805 -27.25349 -24.83489 -23.56664 -22.18809 -21.61516 -18.98190 -18.58651 -18.02787 -17.60389 -17.33661 -17.07962 -16.72268 -16.63614 -16.18294 -15.14365 -14.96336 -14.72444 -14.42095 -14.13098 -13.82916 -13.52402 -13.36033 -12.97893 -12.87105 -12.75802 -12.61935 -12.55072 -12.29922 -12.05791 -11.99986 -11.84022 -11.63333 -11.12861 -11.08569 -10.53958 -9.96810 -9.22437 -8.19935 -6.33706 0.10588 0.42339 1.41419 1.43229 1.45670 1.53201 1.93963 2.34747 2.44392 2.83251 3.10002 3.61204 3.79234 3.96698 4.11347 4.14041 4.31038 4.34164 4.42052 4.44347 4.52443 4.67419 4.68683 4.75053 4.89217 4.96539 4.98532 5.24643 5.35904 5.39507 5.45904 5.54315 5.68092 5.72531 5.87361 6.09335 6.42819 6.72560 7.02585 7.35107 8.86475 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.003648 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.131551 B = 7673.888995 C = 7920.014529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.143 4.143 7 C -0.065 4.065 8 C 0.099 3.901 9 O -0.358 6.358 10 C 0.473 3.527 11 O -0.541 6.541 12 C 0.051 3.949 13 H 0.052 0.948 14 C -0.120 4.120 15 C -0.542 4.542 16 H 0.057 0.943 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.150 4.150 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.045 0.955 35 H 0.269 0.731 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 -1.378 9.088 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.068 3.932 4 C -0.214 4.214 5 C -0.096 4.096 6 C -0.161 4.161 7 C -0.065 4.065 8 C 0.026 3.974 9 O -0.275 6.275 10 C 0.319 3.681 11 O -0.431 6.431 12 C 0.032 3.968 13 H 0.069 0.931 14 C -0.178 4.178 15 C -0.579 4.579 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.169 4.169 24 H 0.135 0.865 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.990 -1.569 9.205 22.064 hybrid contribution 1.019 0.071 0.117 1.028 sum -18.972 -1.498 9.322 21.191 Atomic orbital electron populations 1.23381 0.76133 1.05647 1.02523 1.86061 1.23781 1.26714 1.88713 1.19054 0.91821 0.85356 0.96929 1.21636 1.01507 0.91578 1.06685 1.21302 0.93705 0.98462 0.96111 1.21255 0.94878 0.97833 1.02165 1.19267 0.92686 0.93716 1.00817 1.21881 0.90978 1.03337 0.81224 1.86642 1.25022 1.83987 1.31887 1.24877 0.79375 0.69908 0.93988 1.90472 1.61075 1.47336 1.44199 1.18684 0.95295 0.98127 0.84730 0.93060 1.21559 0.98433 0.95303 1.02513 1.21242 0.90504 1.52649 0.93533 0.92441 1.25660 1.03463 0.94011 0.94607 1.69958 1.37221 1.49817 0.97767 0.85505 0.79255 0.78826 0.77444 1.19835 1.19819 1.19882 1.20389 0.92596 0.97947 1.05931 0.86509 0.91162 0.91546 0.82263 0.82129 0.84603 0.90843 0.89920 0.90280 0.95235 0.93576 0.92204 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.48 10.50 -92.42 -0.97 -8.45 16 3 C 0.11 2.72 6.69 22.50 0.15 2.87 16 4 C -0.20 -3.61 9.04 22.37 0.20 -3.40 16 5 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.14 -3.41 9.70 22.28 0.22 -3.19 16 7 C -0.06 -1.86 5.52 -19.88 -0.11 -1.97 16 8 C 0.10 3.34 5.59 71.24 0.40 3.74 16 9 O -0.36 -14.91 10.11 -51.39 -0.52 -15.43 16 10 C 0.47 23.10 7.25 71.24 0.52 23.62 16 11 O -0.54 -28.52 15.21 21.98 0.33 -28.18 16 12 C 0.05 2.68 2.74 -12.29 -0.03 2.64 16 13 H 0.05 2.81 8.14 -2.38 -0.02 2.79 16 14 C -0.12 -5.88 8.90 71.98 0.64 -5.24 16 15 C -0.54 -31.35 8.37 25.60 0.21 -31.13 16 16 H 0.06 3.47 6.76 -2.91 -0.02 3.45 16 17 C 0.02 1.26 5.30 84.66 0.45 1.71 16 18 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 19 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.15 -4.22 9.64 22.36 0.22 -4.00 16 24 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 26 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 28 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.07 2.45 8.08 -2.39 -0.02 2.43 16 31 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 32 H 0.08 4.14 6.07 -2.39 -0.01 4.13 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.52 312.21 6.38 -61.13 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.07 Total: 9.79 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.20 Total: -14.26 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.24 Total: -50.91 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.16 Total: -52.06 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.52 6.38 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.447 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds