Wall clock time and date at job start Mon Mar 30 2020 06:50:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35894 * 117.00476 * 2 1
4 4 C 1.38734 * 120.06010 * 179.97438 * 3 2 1
5 5 C 1.38140 * 119.94582 * 180.02562 * 4 3 2
6 6 C 1.38268 * 120.05438 * 0.02590 * 5 4 3
7 7 C 1.50707 * 119.94338 * 179.97438 * 6 5 4
8 8 O 1.45202 * 109.46995 * 89.99681 * 7 6 5
9 9 C 1.34228 * 117.00107 * 179.97438 * 8 7 6
10 10 O 1.20822 * 119.99844 * 0.02562 * 9 8 7
11 11 C 1.50698 * 120.00316 * 180.02562 * 9 8 7
12 12 H 1.09007 * 109.46871 * 59.99983 * 11 9 8
13 13 C 1.53000 * 109.47177 * 300.00594 * 11 9 8
14 14 C 1.50694 * 109.47166 * 180.02562 * 11 9 8
15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9
16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9
17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11
18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11
19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14
20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14
21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14
22 22 C 1.38267 * 120.11482 * 0.24857 * 6 5 4
23 23 C 1.38146 * 120.04882 * 359.45332 * 22 6 5
24 24 H 1.09001 * 109.47580 * 300.00194 * 1 2 3
25 25 H 1.09002 * 109.47233 * 59.99817 * 1 2 3
26 26 H 1.09002 * 109.47492 * 179.97438 * 1 2 3
27 27 H 1.08001 * 120.02193 * 0.02562 * 4 3 2
28 28 H 1.07998 * 119.97492 * 180.02562 * 5 4 3
29 29 H 1.09001 * 109.46984 * 330.00071 * 7 6 5
30 30 H 1.08998 * 109.47262 * 209.99500 * 7 6 5
31 31 H 1.09002 * 109.47106 * 299.99721 * 13 11 9
32 32 H 1.08998 * 109.47089 * 59.99668 * 13 11 9
33 33 H 1.08995 * 109.47131 * 179.97438 * 13 11 9
34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
35 35 H 1.07995 * 119.97163 * 179.70897 * 22 6 5
36 36 H 1.08004 * 120.02284 * 180.25152 * 23 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 3.4314 1.2847 0.0005
5 6 4.0561 2.5167 0.0011
6 6 3.3020 3.6756 0.0016
7 6 3.9862 5.0184 0.0028
8 8 4.2065 5.4506 -1.3658
9 6 4.8102 6.6366 -1.5407
10 8 5.1440 7.2917 -0.5820
11 6 5.0717 7.1510 -2.9328
12 1 4.1262 7.2558 -3.4650
13 6 5.9710 6.1645 -3.6805
14 6 5.7550 8.4917 -2.8528
15 1 5.9781 8.9276 -1.8902
16 6 6.0955 9.1621 -4.0086
17 7 5.8244 8.6311 -5.1809
18 14 6.9419 10.8243 -3.9094
19 1 5.9185 11.9001 -3.8823
20 1 7.7615 10.8895 -2.6727
21 1 7.8186 11.0049 -5.0943
22 6 1.9211 3.6047 0.0068
23 6 1.2916 2.3751 0.0001
24 1 -0.3634 0.5139 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 4.0208 0.3797 0.0005
28 1 5.1346 2.5749 0.0011
29 1 4.9440 4.9377 0.5169
30 1 3.3580 5.7459 0.5168
31 1 6.9166 6.0597 -3.1484
32 1 5.4771 5.1946 -3.7384
33 1 6.1598 6.5364 -4.6875
34 1 6.0636 9.1029 -5.9940
35 1 1.3344 4.5113 0.0120
36 1 0.2129 2.3202 0.0000
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049822746.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:40
Heat of formation + Delta-G solvation = -106.920154 kcal
Electronic energy + Delta-G solvation = -19072.018538 eV
Core-core repulsion = 15907.582747 eV
Total energy + Delta-G solvation = -3164.435791 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 264.119 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.31551 -39.49424 -37.72478 -35.59360 -33.86268 -31.54390 -31.13279 -30.44232
-27.90104 -25.75537 -25.18131 -22.96227 -22.73756 -21.19856 -19.75087 -18.32944
-16.73679 -16.49036 -16.21005 -15.96317 -15.88435 -15.30944 -15.00874 -14.46068
-14.03990 -13.80872 -13.54097 -12.97065 -12.80224 -12.55237 -12.29555 -12.01713
-11.62142 -11.48461 -11.10692 -11.01126 -10.94763 -10.77683 -10.68566 -10.31229
-10.04668 -10.01163 -9.15488 -9.09319 -9.02811 -8.44662 -8.24581 -6.09289
-4.14694 1.20669 1.26316 3.05784 3.30393 3.33842 3.35346 3.37497
3.45535 3.98774 4.43379 4.62038 4.73504 4.85739 4.88386 4.89135
5.17923 5.20288 5.24036 5.27137 5.46530 5.61024 5.65085 5.93825
6.11635 6.19180 6.22115 6.56497 6.61668 6.68999 6.90019 6.90844
7.20007 7.25521 7.46011 7.76067 7.96233 8.15976 8.87163 8.95582
9.50757 10.98122
Molecular weight = 264.12amu
Principal moments of inertia in cm(-1)
A = 0.045559 B = 0.003437 C = 0.003375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 614.442349 B = 8144.206066 C = 8294.649510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.319 6.319
3 C 0.128 3.872
4 C -0.154 4.154
5 C -0.057 4.057
6 C -0.121 4.121
7 C 0.106 3.894
8 O -0.361 6.361
9 C 0.464 3.536
10 O -0.519 6.519
11 C 0.057 3.943
12 H 0.064 0.936
13 C -0.133 4.133
14 C -0.512 4.512
15 H 0.075 0.925
16 C 0.061 3.939
17 N -0.892 5.892
18 Si 0.905 3.095
19 H -0.279 1.279
20 H -0.272 1.272
21 H -0.286 1.286
22 C -0.057 4.057
23 C -0.211 4.211
24 H 0.055 0.945
25 H 0.056 0.944
26 H 0.098 0.902
27 H 0.132 0.868
28 H 0.133 0.867
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.031 0.969
32 H 0.024 0.976
33 H 0.095 0.905
34 H 0.263 0.737
35 H 0.128 0.872
36 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.354 -15.449 8.912 20.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.233 6.233
3 C 0.083 3.917
4 C -0.173 4.173
5 C -0.075 4.075
6 C -0.122 4.122
7 C 0.032 3.968
8 O -0.279 6.279
9 C 0.309 3.691
10 O -0.406 6.406
11 C 0.039 3.961
12 H 0.081 0.919
13 C -0.191 4.191
14 C -0.550 4.550
15 H 0.094 0.906
16 C -0.140 4.140
17 N -0.531 5.531
18 Si 0.732 3.268
19 H -0.205 1.205
20 H -0.197 1.197
21 H -0.211 1.211
22 C -0.075 4.075
23 C -0.230 4.230
24 H 0.073 0.927
25 H 0.075 0.925
26 H 0.117 0.883
27 H 0.150 0.850
28 H 0.151 0.849
29 H 0.090 0.910
30 H 0.089 0.911
31 H 0.050 0.950
32 H 0.043 0.957
33 H 0.114 0.886
34 H 0.073 0.927
35 H 0.146 0.854
36 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -9.158 -15.420 9.038 20.083
hybrid contribution 0.116 1.030 0.129 1.044
sum -9.043 -14.390 9.167 19.310
Atomic orbital electron populations
1.23053 0.78435 1.03840 1.01478 1.86056 1.21383 1.27074 1.88738
1.19067 0.92417 0.84064 0.96155 1.20396 0.91314 0.98577 1.07002
1.20930 1.00170 0.90792 0.95572 1.19560 0.93600 0.94174 1.04840
1.21559 0.99958 0.92107 0.83226 1.86706 1.72910 1.38848 1.29475
1.25369 0.71966 0.76791 0.94971 1.90493 1.48972 1.57379 1.43720
1.18759 0.98681 0.95341 0.83359 0.91867 1.21727 0.97762 0.95653
1.03961 1.21145 1.38685 1.01305 0.93905 0.90639 1.24943 0.95690
0.98310 0.95072 1.69885 1.47487 1.38391 0.97330 0.86379 0.79413
0.83364 0.77642 1.20544 1.19676 1.21133 1.20895 0.93843 0.97301
0.95438 1.21194 1.00005 0.92189 1.09577 0.92657 0.92518 0.88318
0.85027 0.84946 0.90998 0.91081 0.94997 0.95743 0.88602 0.92706
0.85424 0.85353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 9.81 101.05 0.99 1.18 16
2 O -0.32 -3.46 10.50 -19.41 -0.20 -3.66 16
3 C 0.13 1.53 6.69 -39.22 -0.26 1.26 16
4 C -0.15 -1.84 9.99 -39.43 -0.39 -2.24 16
5 C -0.06 -0.72 9.69 -39.61 -0.38 -1.11 16
6 C -0.12 -1.71 5.52 -104.60 -0.58 -2.29 16
7 C 0.11 1.73 5.59 36.01 0.20 1.93 16
8 O -0.36 -7.36 10.11 -39.25 -0.40 -7.76 16
9 C 0.46 11.05 7.25 36.00 0.26 11.32 16
10 O -0.52 -13.31 15.21 -18.75 -0.29 -13.59 16
11 C 0.06 1.48 2.74 -92.93 -0.25 1.23 16
12 H 0.06 1.68 8.14 -51.92 -0.42 1.26 16
13 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16
14 C -0.51 -14.50 8.37 -34.44 -0.29 -14.79 16
15 H 0.08 2.22 6.76 -52.49 -0.35 1.87 16
16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16
17 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16
18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16
19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16
21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
22 C -0.06 -0.72 9.69 -39.60 -0.38 -1.10 16
23 C -0.21 -2.38 9.04 -39.43 -0.36 -2.74 16
24 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16
25 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16
26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16
28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16
29 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16
30 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16
31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.02 0.52 8.11 -51.93 -0.42 0.09 16
33 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16
34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16
36 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16
LS Contribution 312.20 15.07 4.70 4.70
Total: -1.00 -31.30 312.20 -6.51 -37.81
By element:
Atomic # 1 Polarization: 3.66 SS G_CDS: -4.73 Total: -1.06 kcal
Atomic # 6 Polarization: -7.41 SS G_CDS: -1.21 Total: -8.62 kcal
Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal
Atomic # 8 Polarization: -24.12 SS G_CDS: -0.89 Total: -25.01 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -31.30 -6.51 -37.81 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049822746.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.106 kcal
(2) G-P(sol) polarization free energy of solvation -31.302 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds