Wall clock time and date at job start Mon Mar 30 2020 06:50:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35894 * 117.00476 * 2 1
4 4 C 1.38734 * 120.06010 * 179.97438 * 3 2 1
5 5 C 1.38140 * 119.94582 * 180.02562 * 4 3 2
6 6 C 1.38268 * 120.05438 * 0.02590 * 5 4 3
7 7 C 1.50707 * 119.94338 * 179.97438 * 6 5 4
8 8 O 1.45202 * 109.46995 * 89.99681 * 7 6 5
9 9 C 1.34228 * 117.00107 * 179.97438 * 8 7 6
10 10 O 1.20822 * 119.99844 * 0.02562 * 9 8 7
11 11 C 1.50698 * 120.00316 * 180.02562 * 9 8 7
12 12 H 1.09007 * 109.46871 * 59.99983 * 11 9 8
13 13 C 1.53000 * 109.47177 * 300.00594 * 11 9 8
14 14 C 1.50694 * 109.47166 * 180.02562 * 11 9 8
15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9
16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9
17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11
18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11
19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14
20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14
21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14
22 22 C 1.38267 * 120.11482 * 0.24857 * 6 5 4
23 23 C 1.38146 * 120.04882 * 359.45332 * 22 6 5
24 24 H 1.09001 * 109.47580 * 300.00194 * 1 2 3
25 25 H 1.09002 * 109.47233 * 59.99817 * 1 2 3
26 26 H 1.09002 * 109.47492 * 179.97438 * 1 2 3
27 27 H 1.08001 * 120.02193 * 0.02562 * 4 3 2
28 28 H 1.07998 * 119.97492 * 180.02562 * 5 4 3
29 29 H 1.09001 * 109.46984 * 330.00071 * 7 6 5
30 30 H 1.08998 * 109.47262 * 209.99500 * 7 6 5
31 31 H 1.09002 * 109.47106 * 299.99721 * 13 11 9
32 32 H 1.08998 * 109.47089 * 59.99668 * 13 11 9
33 33 H 1.08995 * 109.47131 * 179.97438 * 13 11 9
34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
35 35 H 1.07995 * 119.97163 * 179.70897 * 22 6 5
36 36 H 1.08004 * 120.02284 * 180.25152 * 23 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 3.4314 1.2847 0.0005
5 6 4.0561 2.5167 0.0011
6 6 3.3020 3.6756 0.0016
7 6 3.9862 5.0184 0.0028
8 8 4.2065 5.4506 -1.3658
9 6 4.8102 6.6366 -1.5407
10 8 5.1440 7.2917 -0.5820
11 6 5.0717 7.1510 -2.9328
12 1 4.1262 7.2558 -3.4650
13 6 5.9710 6.1645 -3.6805
14 6 5.7550 8.4917 -2.8528
15 1 5.9781 8.9276 -1.8902
16 6 6.0955 9.1621 -4.0086
17 7 5.8244 8.6311 -5.1809
18 14 6.9419 10.8243 -3.9094
19 1 5.9185 11.9001 -3.8823
20 1 7.7615 10.8895 -2.6727
21 1 7.8186 11.0049 -5.0943
22 6 1.9211 3.6047 0.0068
23 6 1.2916 2.3751 0.0001
24 1 -0.3634 0.5139 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 4.0208 0.3797 0.0005
28 1 5.1346 2.5749 0.0011
29 1 4.9440 4.9377 0.5169
30 1 3.3580 5.7459 0.5168
31 1 6.9166 6.0597 -3.1484
32 1 5.4771 5.1946 -3.7384
33 1 6.1598 6.5364 -4.6875
34 1 6.0636 9.1029 -5.9940
35 1 1.3344 4.5113 0.0120
36 1 0.2129 2.3202 0.0000
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000049822746.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:40
Heat of formation + Delta-G solvation = -124.122908 kcal
Electronic energy + Delta-G solvation = -19072.764505 eV
Core-core repulsion = 15907.582747 eV
Total energy + Delta-G solvation = -3165.181758 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 264.119 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.46852 -40.96964 -38.71903 -37.25367 -35.91648 -32.91504 -32.25931 -31.98275
-28.63229 -27.29281 -26.88300 -24.75197 -23.67116 -22.23602 -21.58531 -19.15433
-18.62356 -18.03530 -17.68171 -17.54373 -16.76208 -16.64747 -16.50833 -15.81602
-15.31354 -14.89488 -14.67415 -14.49471 -14.28449 -13.81851 -13.56666 -13.41059
-12.98088 -12.84603 -12.79968 -12.61816 -12.51356 -12.28212 -12.06066 -11.96437
-11.85000 -11.56165 -11.10930 -11.04533 -10.53332 -10.01953 -9.21512 -8.19766
-6.33259 0.20421 0.33902 1.42089 1.43273 1.45606 1.55079 1.98017
2.34209 2.44123 2.83592 3.10233 3.70833 3.73385 3.89761 4.07508
4.17811 4.34239 4.40004 4.41175 4.49435 4.55924 4.67826 4.69363
4.75641 4.90785 5.00228 5.02432 5.17785 5.29009 5.38992 5.49413
5.57114 5.69297 5.70777 5.88785 6.10539 6.39620 6.73449 7.05809
7.35662 8.86770
Molecular weight = 264.12amu
Principal moments of inertia in cm(-1)
A = 0.045559 B = 0.003437 C = 0.003375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 614.442349 B = 8144.206066 C = 8294.649510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.331 6.331
3 C 0.127 3.873
4 C -0.162 4.162
5 C -0.061 4.061
6 C -0.144 4.144
7 C 0.104 3.896
8 O -0.359 6.359
9 C 0.473 3.527
10 O -0.543 6.543
11 C 0.050 3.950
12 H 0.050 0.950
13 C -0.120 4.120
14 C -0.539 4.539
15 H 0.057 0.943
16 C 0.022 3.978
17 N -0.910 5.910
18 Si 0.964 3.036
19 H -0.273 1.273
20 H -0.275 1.275
21 H -0.273 1.273
22 C -0.063 4.063
23 C -0.210 4.210
24 H 0.067 0.933
25 H 0.063 0.937
26 H 0.121 0.879
27 H 0.147 0.853
28 H 0.141 0.859
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.030 0.970
32 H 0.046 0.954
33 H 0.077 0.923
34 H 0.268 0.732
35 H 0.137 0.863
36 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.129 -16.426 9.137 21.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.245 6.245
3 C 0.081 3.919
4 C -0.181 4.181
5 C -0.079 4.079
6 C -0.144 4.144
7 C 0.031 3.969
8 O -0.277 6.277
9 C 0.318 3.682
10 O -0.433 6.433
11 C 0.031 3.969
12 H 0.068 0.932
13 C -0.178 4.178
14 C -0.577 4.577
15 H 0.075 0.925
16 C -0.178 4.178
17 N -0.548 5.548
18 Si 0.789 3.211
19 H -0.198 1.198
20 H -0.200 1.200
21 H -0.198 1.198
22 C -0.081 4.081
23 C -0.228 4.228
24 H 0.085 0.915
25 H 0.082 0.918
26 H 0.139 0.861
27 H 0.165 0.835
28 H 0.159 0.841
29 H 0.093 0.907
30 H 0.093 0.907
31 H 0.049 0.951
32 H 0.065 0.935
33 H 0.096 0.904
34 H 0.078 0.922
35 H 0.155 0.845
36 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -9.956 -16.430 9.259 21.326
hybrid contribution 0.233 1.172 0.094 1.199
sum -9.724 -15.258 9.353 20.368
Atomic orbital electron populations
1.23380 0.76325 1.05732 1.02369 1.86052 1.23595 1.26492 1.88363
1.19262 0.92659 0.84761 0.95186 1.20613 0.91884 0.98793 1.06795
1.21067 1.00719 0.90789 0.95351 1.19471 0.94345 0.93128 1.07502
1.21823 1.00630 0.93575 0.80887 1.86651 1.71795 1.36890 1.32343
1.24835 0.71881 0.77553 0.93897 1.90472 1.50186 1.58391 1.44205
1.18681 0.98113 0.95258 0.84883 0.93238 1.21555 0.97579 0.96206
1.02460 1.21268 1.40050 1.02922 0.93471 0.92498 1.25656 0.95988
1.01505 0.94637 1.69966 1.47548 1.39535 0.97767 0.85457 0.78556
0.79335 0.77727 1.19805 1.20002 1.19844 1.21081 0.93432 0.98418
0.95170 1.21444 1.01382 0.91369 1.08639 0.91464 0.91846 0.86112
0.83501 0.84115 0.90677 0.90709 0.95126 0.93462 0.90388 0.92241
0.84511 0.82752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.81 113.37 1.11 1.29 16
2 O -0.33 -6.40 10.50 -92.35 -0.97 -7.37 16
3 C 0.13 2.77 6.69 22.51 0.15 2.92 16
4 C -0.16 -3.63 9.99 22.36 0.22 -3.40 16
5 C -0.06 -1.50 9.69 22.25 0.22 -1.28 16
6 C -0.14 -3.94 5.52 -19.85 -0.11 -4.05 16
7 C 0.10 3.38 5.59 71.24 0.40 3.77 16
8 O -0.36 -14.60 10.11 -51.39 -0.52 -15.12 16
9 C 0.47 22.76 7.25 71.24 0.52 23.27 16
10 O -0.54 -28.30 15.21 21.98 0.33 -27.96 16
11 C 0.05 2.60 2.74 -12.29 -0.03 2.56 16
12 H 0.05 2.70 8.14 -2.38 -0.02 2.68 16
13 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16
14 C -0.54 -31.01 8.37 25.60 0.21 -30.80 16
15 H 0.06 3.43 6.76 -2.91 -0.02 3.41 16
16 C 0.02 1.22 5.30 84.66 0.45 1.67 16
17 N -0.91 -50.94 11.32 21.45 0.24 -50.70 16
18 Si 0.96 44.09 29.54 68.60 2.03 46.12 16
19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
22 C -0.06 -1.50 9.69 22.25 0.22 -1.29 16
23 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16
24 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16
25 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16
26 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16
27 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16
28 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16
29 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16
30 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16
31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16
33 H 0.08 4.04 6.07 -2.39 -0.01 4.03 16
34 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16
35 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16
36 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16
Total: -1.00 -66.22 312.20 6.38 -59.84
By element:
Atomic # 1 Polarization: 8.68 SS G_CDS: 1.07 Total: 9.76 kcal
Atomic # 6 Polarization: -18.76 SS G_CDS: 4.19 Total: -14.57 kcal
Atomic # 7 Polarization: -50.94 SS G_CDS: 0.24 Total: -50.70 kcal
Atomic # 8 Polarization: -49.29 SS G_CDS: -1.15 Total: -50.45 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -66.22 6.38 -59.84 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049822746.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.283 kcal
(2) G-P(sol) polarization free energy of solvation -66.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds