Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35914 * 116.99617 * 2 1 4 4 C 1.38856 * 119.98284 * 359.97438 * 3 2 1 5 5 C 1.38259 * 120.24786 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.89329 * 180.02562 * 5 4 3 7 7 C 1.37996 * 120.20981 * 359.97438 * 5 4 3 8 8 C 1.50697 * 120.01825 * 180.02562 * 7 5 4 9 9 C 1.39611 * 119.96387 * 0.02568 * 7 5 4 10 10 C 1.47740 * 120.12596 * 180.02562 * 9 7 5 11 11 O 1.21468 * 120.00210 * 89.99781 * 10 9 7 12 12 O 1.34711 * 119.99762 * 269.99881 * 10 9 7 13 13 C 1.38440 * 119.97526 * 179.72068 * 3 2 1 14 14 C 1.50693 * 120.11076 * 0.02562 * 13 3 2 15 15 C 1.50701 * 109.47237 * 89.99946 * 14 13 3 16 16 H 1.08008 * 119.99720 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00360 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47090 * 119.99517 * 19 17 15 22 22 H 1.48503 * 109.46817 * 239.99447 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00556 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00116 * 1 2 3 26 26 H 1.07996 * 119.87934 * 359.97438 * 4 3 2 27 27 H 1.09002 * 109.46858 * 90.00143 * 6 5 4 28 28 H 1.08997 * 109.47335 * 209.99491 * 6 5 4 29 29 H 1.08999 * 109.47779 * 330.00025 * 6 5 4 30 30 H 1.08997 * 109.46955 * 89.99952 * 8 7 5 31 31 H 1.09003 * 109.46931 * 210.00305 * 8 7 5 32 32 H 1.09005 * 109.46824 * 330.00028 * 8 7 5 33 33 H 0.96696 * 117.00151 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.47244 * 209.99902 * 14 13 3 35 35 H 1.09003 * 109.47381 * 330.00156 * 14 13 3 36 36 H 0.97005 * 120.00144 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9112 3.6101 0.0000 6 6 1.0822 4.8686 0.0000 7 6 3.2886 3.6939 0.0016 8 6 3.9620 5.0420 0.0028 9 6 4.0580 2.5289 0.0021 10 6 5.5329 2.6144 0.0044 11 8 6.1377 2.6490 1.0573 12 8 6.2071 2.6539 -1.1612 13 6 3.4285 1.2830 0.0058 14 6 4.2512 0.0205 0.0116 15 6 4.5316 -0.4029 -1.4072 16 1 4.1523 0.1839 -2.2309 17 6 5.2723 -1.5393 -1.6540 18 7 5.7346 -2.2536 -0.6512 19 14 5.6204 -2.0637 -3.4128 20 1 4.9943 -1.0974 -4.3506 21 1 7.0878 -2.0939 -3.6391 22 1 5.0555 -3.4170 -3.6468 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2110 2.3161 -0.0014 27 1 0.8820 5.1717 1.0277 28 1 1.6257 5.6617 -0.5134 29 1 0.1393 4.6826 -0.5142 30 1 4.1231 5.3668 1.0307 31 1 4.9211 4.9696 -0.5101 32 1 3.3286 5.7649 -0.5116 33 1 7.1711 2.7094 -1.1091 34 1 5.1930 0.2028 0.5292 35 1 3.7017 -0.7690 0.5245 36 1 6.2560 -3.0529 -0.8248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057953860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = -116.632802 kcal Electronic energy + Delta-G solvation = -20419.578648 eV Core-core repulsion = 17254.721685 eV Total energy + Delta-G solvation = -3164.856963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32072 -39.11524 -37.31562 -35.40868 -34.14123 -32.23748 -31.63848 -28.91377 -27.72988 -26.72505 -24.94890 -23.99430 -22.43750 -20.37978 -19.68711 -17.61799 -17.05784 -16.57917 -16.27492 -15.64201 -15.23361 -14.78567 -14.44845 -14.16225 -14.04233 -13.63488 -13.09657 -12.67628 -12.52833 -12.46253 -12.39289 -11.86186 -11.61682 -11.56754 -11.44038 -11.07307 -10.94704 -10.87962 -10.56020 -10.46147 -10.35300 -10.04499 -9.55782 -9.38071 -8.37023 -8.24019 -7.42455 -5.97657 -4.00663 1.51260 1.84525 2.71359 3.32896 3.39898 3.45842 3.53359 3.90234 4.08919 4.50113 4.95925 5.18234 5.21391 5.23772 5.36105 5.38232 5.42355 5.49324 5.60037 5.72749 5.80098 5.82189 5.88175 6.00188 6.06993 6.12300 6.44831 6.56615 6.79487 6.87722 7.00530 7.10189 7.57160 7.69796 7.92993 7.97468 8.32981 8.46101 9.02531 9.61535 11.12478 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.008329 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.571239 B = 3360.777246 C = 4426.540822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.122 3.878 4 C -0.188 4.188 5 C -0.079 4.079 6 C -0.108 4.108 7 C -0.088 4.088 8 C -0.114 4.114 9 C -0.079 4.079 10 C 0.557 3.443 11 O -0.517 6.517 12 O -0.497 6.497 13 C -0.025 4.025 14 C 0.049 3.951 15 C -0.499 4.499 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.404 0.596 34 H 0.028 0.972 35 H 0.043 0.957 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 12.201 0.331 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C 0.077 3.923 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.165 4.165 7 C -0.089 4.089 8 C -0.171 4.171 9 C -0.080 4.080 10 C 0.400 3.600 11 O -0.406 6.406 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.013 3.987 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.818 11.833 0.626 14.771 hybrid contribution 0.594 -0.395 -0.890 1.141 sum -8.224 11.439 -0.264 14.090 Atomic orbital electron populations 1.22995 0.79817 1.03517 1.00472 1.86295 1.19836 1.25982 1.88369 1.18574 0.91529 0.84143 0.98100 1.21115 0.99483 0.91750 1.08363 1.19120 0.92423 0.94526 1.01879 1.20764 0.98841 0.94851 1.01999 1.19387 0.92780 0.93727 1.02974 1.20830 1.00207 0.93775 1.02242 1.18481 0.88952 0.93350 1.07262 1.20642 0.88480 0.69853 0.81051 1.90852 1.70054 1.46608 1.33114 1.84727 1.25973 1.84853 1.35110 1.19990 0.91346 0.96158 0.95054 1.18335 0.93681 0.88235 0.98474 1.20965 1.32863 1.09092 0.90837 0.92372 1.24971 0.95806 0.96338 0.97125 1.69980 1.36287 1.16595 1.30456 0.86482 0.77916 0.78441 0.84896 1.19620 1.21014 1.21027 0.93158 0.88574 0.93351 0.85665 0.91447 0.91252 0.91919 0.91174 0.92062 0.90875 0.73831 0.95414 0.93927 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.29 -5.87 9.53 -19.47 -0.19 -6.06 16 3 C 0.12 2.49 6.65 -39.28 -0.26 2.23 16 4 C -0.19 -3.09 8.68 -39.34 -0.34 -3.43 16 5 C -0.08 -1.23 5.87 -104.71 -0.61 -1.84 16 6 C -0.11 -1.18 9.59 36.00 0.35 -0.83 16 7 C -0.09 -1.53 5.92 -104.20 -0.62 -2.15 16 8 C -0.11 -1.56 9.20 36.00 0.33 -1.23 16 9 C -0.08 -1.68 5.75 -105.00 -0.60 -2.29 16 10 C 0.56 11.90 4.70 34.61 0.16 12.07 16 11 O -0.52 -11.94 17.89 -19.24 -0.34 -12.29 16 12 O -0.50 -9.39 13.44 -40.52 -0.54 -9.93 16 13 C -0.02 -0.57 5.12 -104.05 -0.53 -1.11 16 14 C 0.05 1.35 4.48 -29.04 -0.13 1.22 16 15 C -0.50 -14.41 9.09 -34.44 -0.31 -14.72 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 26 H 0.13 1.64 6.28 -52.49 -0.33 1.31 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.86 7.08 -51.93 -0.37 0.49 16 32 H 0.07 0.80 5.94 -51.93 -0.31 0.49 16 33 H 0.40 5.54 9.11 45.56 0.42 5.96 16 34 H 0.03 0.82 7.08 -51.93 -0.37 0.45 16 35 H 0.04 1.24 7.53 -51.93 -0.39 0.85 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -35.02 308.16 -6.08 -41.10 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.68 Total: 1.06 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.68 Total: -9.11 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.07 Total: -28.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.02 -6.08 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057953860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.537 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds