Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35914 * 116.99617 * 2 1 4 4 C 1.38856 * 119.98284 * 359.97438 * 3 2 1 5 5 C 1.38259 * 120.24786 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.89329 * 180.02562 * 5 4 3 7 7 C 1.37996 * 120.20981 * 359.97438 * 5 4 3 8 8 C 1.50697 * 120.01825 * 180.02562 * 7 5 4 9 9 C 1.39611 * 119.96387 * 0.02568 * 7 5 4 10 10 C 1.47740 * 120.12596 * 180.02562 * 9 7 5 11 11 O 1.21468 * 120.00210 * 89.99781 * 10 9 7 12 12 O 1.34711 * 119.99762 * 269.99881 * 10 9 7 13 13 C 1.38440 * 119.97526 * 179.72068 * 3 2 1 14 14 C 1.50693 * 120.11076 * 0.02562 * 13 3 2 15 15 C 1.50701 * 109.47237 * 89.99946 * 14 13 3 16 16 H 1.08008 * 119.99720 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00360 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47090 * 119.99517 * 19 17 15 22 22 H 1.48503 * 109.46817 * 239.99447 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00556 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00116 * 1 2 3 26 26 H 1.07996 * 119.87934 * 359.97438 * 4 3 2 27 27 H 1.09002 * 109.46858 * 90.00143 * 6 5 4 28 28 H 1.08997 * 109.47335 * 209.99491 * 6 5 4 29 29 H 1.08999 * 109.47779 * 330.00025 * 6 5 4 30 30 H 1.08997 * 109.46955 * 89.99952 * 8 7 5 31 31 H 1.09003 * 109.46931 * 210.00305 * 8 7 5 32 32 H 1.09005 * 109.46824 * 330.00028 * 8 7 5 33 33 H 0.96696 * 117.00151 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.47244 * 209.99902 * 14 13 3 35 35 H 1.09003 * 109.47381 * 330.00156 * 14 13 3 36 36 H 0.97005 * 120.00144 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9112 3.6101 0.0000 6 6 1.0822 4.8686 0.0000 7 6 3.2886 3.6939 0.0016 8 6 3.9620 5.0420 0.0028 9 6 4.0580 2.5289 0.0021 10 6 5.5329 2.6144 0.0044 11 8 6.1377 2.6490 1.0573 12 8 6.2071 2.6539 -1.1612 13 6 3.4285 1.2830 0.0058 14 6 4.2512 0.0205 0.0116 15 6 4.5316 -0.4029 -1.4072 16 1 4.1523 0.1839 -2.2309 17 6 5.2723 -1.5393 -1.6540 18 7 5.7346 -2.2536 -0.6512 19 14 5.6204 -2.0637 -3.4128 20 1 4.9943 -1.0974 -4.3506 21 1 7.0878 -2.0939 -3.6391 22 1 5.0555 -3.4170 -3.6468 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2110 2.3161 -0.0014 27 1 0.8820 5.1717 1.0277 28 1 1.6257 5.6617 -0.5134 29 1 0.1393 4.6826 -0.5142 30 1 4.1231 5.3668 1.0307 31 1 4.9211 4.9696 -0.5101 32 1 3.3286 5.7649 -0.5116 33 1 7.1711 2.7094 -1.1091 34 1 5.1930 0.2028 0.5292 35 1 3.7017 -0.7690 0.5245 36 1 6.2560 -3.0529 -0.8248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057953860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = -140.839000 kcal Electronic energy + Delta-G solvation = -20420.628307 eV Core-core repulsion = 17254.721685 eV Total energy + Delta-G solvation = -3165.906622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82022 -40.64027 -38.66850 -37.04583 -35.95285 -34.11922 -32.92628 -30.57712 -28.92511 -28.08447 -26.49334 -25.48150 -24.26468 -21.82678 -21.18590 -19.21368 -18.57907 -18.44419 -18.00991 -17.14539 -16.66217 -16.54386 -15.99002 -15.69575 -15.09481 -14.85739 -14.51346 -14.45010 -14.05502 -13.91944 -13.57712 -13.26684 -13.06134 -12.91448 -12.74976 -12.60497 -12.56271 -12.54435 -12.34728 -12.17430 -11.81217 -11.66390 -11.41710 -11.27136 -10.62770 -9.68652 -8.89064 -8.19102 -6.33084 0.07056 0.44512 1.05686 1.36778 1.37736 1.52022 2.09856 2.38080 2.60045 2.68029 3.10248 3.78802 3.91543 3.96148 4.10904 4.27130 4.38293 4.45480 4.47771 4.68078 4.69101 4.74133 4.81124 4.85470 4.92926 4.98556 5.09402 5.21082 5.31590 5.36143 5.45897 5.58654 5.64742 5.71222 5.85868 6.11813 6.60274 6.76648 6.93476 7.34148 8.90363 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.008329 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.571239 B = 3360.777246 C = 4426.540822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.108 3.892 4 C -0.177 4.177 5 C -0.064 4.064 6 C -0.107 4.107 7 C -0.094 4.094 8 C -0.113 4.113 9 C -0.102 4.102 10 C 0.556 3.444 11 O -0.547 6.547 12 O -0.498 6.498 13 C -0.078 4.078 14 C 0.069 3.931 15 C -0.509 4.509 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.275 1.275 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.423 0.577 34 H -0.013 1.013 35 H 0.006 0.994 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 14.701 -1.123 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.063 3.937 4 C -0.195 4.195 5 C -0.064 4.064 6 C -0.163 4.163 7 C -0.094 4.094 8 C -0.169 4.169 9 C -0.103 4.103 10 C 0.401 3.599 11 O -0.439 6.439 12 O -0.309 6.309 13 C -0.079 4.079 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.071 0.929 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.201 1.201 23 H 0.088 0.912 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.184 0.816 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.284 0.716 34 H 0.006 0.994 35 H 0.024 0.976 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.187 14.348 -0.841 18.213 hybrid contribution 1.251 -1.113 -0.399 1.721 sum -9.936 13.235 -1.240 16.596 Atomic orbital electron populations 1.23365 0.76639 1.05235 1.02483 1.86230 1.23325 1.26718 1.88568 1.18714 0.90794 0.85679 0.98519 1.21534 1.01205 0.90490 1.06271 1.19792 0.92101 0.96341 0.98190 1.20916 0.99056 0.92431 1.03870 1.19879 0.93792 0.93884 1.01854 1.20930 1.00226 0.92406 1.03305 1.18713 0.88929 0.94199 1.08499 1.20918 0.89081 0.68941 0.80989 1.90813 1.70768 1.48194 1.34075 1.84681 1.27781 1.84301 1.34184 1.19711 0.92809 0.94946 1.00443 1.17864 0.92060 0.89868 0.97019 1.21183 1.32838 1.09264 0.91437 0.92909 1.25944 0.95375 0.96236 1.01918 1.70122 1.37060 1.17175 1.33063 0.85363 0.78148 0.78248 0.79104 1.18691 1.19986 1.20101 0.91212 0.87302 0.90965 0.81625 0.89415 0.89482 0.89656 0.90155 0.92968 0.87236 0.71608 0.99437 0.97593 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -13.74 9.53 -92.58 -0.88 -14.62 16 3 C 0.11 4.46 6.65 22.47 0.15 4.61 16 4 C -0.18 -5.30 8.68 22.42 0.19 -5.11 16 5 C -0.06 -1.75 5.87 -19.92 -0.12 -1.87 16 6 C -0.11 -1.68 9.59 71.23 0.68 -1.00 16 7 C -0.09 -3.09 5.92 -19.59 -0.12 -3.20 16 8 C -0.11 -2.77 9.20 71.24 0.66 -2.11 16 9 C -0.10 -4.45 5.75 -20.11 -0.12 -4.57 16 10 C 0.56 24.81 4.70 70.33 0.33 25.14 16 11 O -0.55 -26.58 17.89 19.94 0.36 -26.23 16 12 O -0.50 -19.39 13.44 -56.20 -0.76 -20.14 16 13 C -0.08 -3.83 5.12 -19.49 -0.10 -3.93 16 14 C 0.07 4.07 4.48 29.10 0.13 4.20 16 15 C -0.51 -30.83 9.09 25.60 0.23 -30.60 16 16 H 0.05 3.17 7.74 -2.91 -0.02 3.14 16 17 C 0.00 0.16 5.46 84.65 0.46 0.63 16 18 N -0.93 -59.33 13.29 21.45 0.28 -59.05 16 19 Si 0.97 46.13 29.54 68.60 2.03 48.15 16 20 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 24 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.07 1.45 7.66 -2.39 -0.02 1.44 16 26 H 0.17 3.52 6.28 -2.91 -0.02 3.50 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.12 5.93 -2.39 -0.01 1.11 16 29 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.38 7.08 -2.39 -0.02 1.36 16 32 H 0.11 1.86 5.94 -2.38 -0.01 1.85 16 33 H 0.42 12.00 9.11 -74.06 -0.67 11.33 16 34 H -0.01 -0.82 7.08 -2.39 -0.02 -0.83 16 35 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -82.39 308.16 4.97 -77.42 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.44 Total: 10.74 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 3.50 Total: -16.27 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.28 Total: -59.05 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -1.28 Total: -61.00 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -82.39 4.97 -77.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057953860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.418 kcal (2) G-P(sol) polarization free energy of solvation -82.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds