Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 117.00115 * 2 1 4 4 C 1.38858 * 119.98456 * 359.96955 * 3 2 1 5 5 C 1.38254 * 120.25069 * 179.72157 * 4 3 2 6 6 C 1.50694 * 119.89548 * 180.30049 * 5 4 3 7 7 C 1.37996 * 120.20769 * 0.56747 * 5 4 3 8 8 C 1.50700 * 120.01583 * 179.74357 * 7 5 4 9 9 C 1.50702 * 109.46869 * 269.71637 * 8 7 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.39614 * 119.96204 * 359.45836 * 7 5 4 18 18 C 1.47741 * 120.12334 * 180.27837 * 17 7 5 19 19 O 1.21466 * 119.99918 * 90.00177 * 18 17 7 20 20 O 1.34710 * 119.99966 * 270.00284 * 18 17 7 21 21 C 1.38447 * 119.98013 * 179.97438 * 3 2 1 22 22 C 1.50699 * 120.10511 * 0.02562 * 21 3 2 23 23 H 1.09002 * 109.46600 * 60.00029 * 1 2 3 24 24 H 1.08995 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47065 * 300.00378 * 1 2 3 26 26 H 1.08002 * 119.87575 * 0.02562 * 4 3 2 27 27 H 1.08995 * 109.47444 * 270.25956 * 6 5 4 28 28 H 1.08997 * 109.47091 * 30.26332 * 6 5 4 29 29 H 1.09000 * 109.46816 * 150.26039 * 6 5 4 30 30 H 1.09004 * 109.47210 * 149.71930 * 8 7 5 31 31 H 1.08994 * 109.47551 * 29.71583 * 8 7 5 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 0.96695 * 116.99806 * 179.97438 * 20 18 17 34 34 H 1.09000 * 109.47372 * 269.97849 * 22 21 3 35 35 H 1.09003 * 109.46775 * 29.98321 * 22 21 3 36 36 H 1.08999 * 109.46893 * 149.97494 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3753 -0.0006 5 6 1.9114 3.6100 0.0052 6 6 1.0826 4.8685 0.0113 7 6 3.2889 3.6937 -0.0002 8 6 3.9622 5.0418 0.0003 9 6 4.1873 5.4914 -1.4203 10 1 3.8736 4.8639 -2.2415 11 6 4.7879 6.7068 -1.6719 12 7 5.1695 7.4711 -0.6720 13 14 5.0599 7.2675 -3.4328 14 1 3.8772 8.0372 -3.8955 15 1 6.2674 8.1295 -3.4970 16 1 5.2512 6.0817 -4.3060 17 6 4.0582 2.5286 -0.0001 18 6 5.5331 2.6140 0.0004 19 8 6.1390 2.6490 1.0526 20 8 6.2059 2.6531 -1.1660 21 6 3.4287 1.2829 0.0005 22 6 4.2513 0.0202 0.0005 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2111 2.3162 -0.0007 27 1 0.8787 5.1743 -1.0148 28 1 0.1415 4.6812 0.5284 29 1 1.6280 5.6603 0.5248 30 1 4.9206 4.9691 0.5145 31 1 3.3283 5.7645 0.5140 32 1 5.5924 8.3260 -0.8490 33 1 7.1699 2.7093 -1.1150 34 1 4.4496 -0.2843 1.0282 35 1 3.7039 -0.7700 -0.5135 36 1 5.1953 0.2016 -0.5133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057953861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = -118.967555 kcal Electronic energy + Delta-G solvation = -20353.803973 eV Core-core repulsion = 17188.845768 eV Total energy + Delta-G solvation = -3164.958205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37380 -39.21909 -37.38793 -35.40544 -33.94306 -32.92051 -30.98048 -28.91222 -27.97887 -26.88329 -24.73041 -23.71806 -22.90316 -20.27188 -19.68283 -17.64772 -17.14813 -16.60674 -16.34943 -15.68395 -15.61018 -14.86973 -14.61026 -13.97712 -13.63292 -13.51932 -12.95851 -12.89997 -12.61667 -12.44533 -12.24572 -11.90610 -11.64538 -11.53705 -11.37514 -11.17119 -10.93455 -10.85654 -10.61996 -10.48693 -10.37247 -9.97970 -9.59745 -9.38779 -8.44051 -8.30374 -7.46334 -6.06065 -4.10224 1.46966 1.89965 2.72212 3.28773 3.32421 3.35619 3.40601 3.77573 4.10505 4.43951 5.00511 5.08528 5.18147 5.19396 5.29142 5.40681 5.43872 5.63618 5.65893 5.85211 5.87632 5.99563 6.03675 6.09931 6.25007 6.40278 6.59489 6.68960 6.78999 6.94135 7.01626 7.11244 7.49122 7.64391 7.66968 7.89008 8.24460 8.45920 8.94202 9.53450 11.03481 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.007158 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.532723 B = 3910.534938 C = 4669.004545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.099 3.901 4 C -0.183 4.183 5 C -0.057 4.057 6 C -0.109 4.109 7 C -0.025 4.025 8 C 0.043 3.957 9 C -0.506 4.506 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.079 4.079 18 C 0.557 3.443 19 O -0.517 6.517 20 O -0.497 6.497 21 C -0.087 4.087 22 C -0.105 4.105 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -11.995 0.328 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.055 3.945 4 C -0.201 4.201 5 C -0.057 4.057 6 C -0.166 4.166 7 C -0.025 4.025 8 C 0.006 3.994 9 C -0.544 4.544 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.080 4.080 18 C 0.400 3.600 19 O -0.406 6.406 20 O -0.306 6.306 21 C -0.088 4.088 22 C -0.162 4.162 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.371 -12.033 0.627 14.125 hybrid contribution 0.549 0.638 -0.929 1.254 sum -6.821 -11.395 -0.302 13.284 Atomic orbital electron populations 1.22970 0.79066 1.03283 1.01240 1.86000 1.20710 1.26848 1.89647 1.18266 0.90989 0.84035 1.01236 1.21156 0.99458 0.91789 1.07717 1.19475 0.93173 0.94503 0.98550 1.20795 0.97730 0.95176 1.02872 1.20455 0.92549 0.96286 0.93235 1.18495 0.95645 0.86843 0.98385 1.20949 1.39409 1.03144 0.90898 0.92261 1.24982 0.95445 0.96533 0.97175 1.69964 1.40816 1.11704 1.30678 0.86549 0.77710 0.78707 0.84868 1.20614 1.21208 1.19648 1.18524 0.89113 0.93261 1.07073 1.20636 0.88426 0.69901 0.81051 1.90852 1.69949 1.46649 1.33186 1.84731 1.26059 1.84786 1.35071 1.18883 0.90866 0.94108 1.04940 1.20624 0.98619 0.94673 1.02261 0.92863 0.88722 0.92919 0.85658 0.90714 0.92843 0.89919 0.95455 0.94025 0.92806 0.73837 0.91270 0.90787 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.58 9.53 -19.44 -0.19 -4.77 16 3 C 0.10 1.67 6.65 -39.28 -0.26 1.41 16 4 C -0.18 -3.00 8.68 -39.35 -0.34 -3.34 16 5 C -0.06 -1.09 5.87 -104.71 -0.61 -1.70 16 6 C -0.11 -1.87 9.59 36.00 0.35 -1.52 16 7 C -0.02 -0.55 5.11 -104.20 -0.53 -1.08 16 8 C 0.04 1.10 4.30 -29.03 -0.12 0.98 16 9 C -0.51 -13.85 9.09 -34.44 -0.31 -14.16 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.08 -1.67 5.75 -105.00 -0.60 -2.27 16 18 C 0.56 11.91 4.69 34.61 0.16 12.07 16 19 O -0.52 -11.94 17.89 -19.24 -0.34 -12.29 16 20 O -0.50 -9.41 13.44 -40.52 -0.54 -9.95 16 21 C -0.09 -1.61 5.93 -104.05 -0.62 -2.22 16 22 C -0.11 -1.62 9.40 36.01 0.34 -1.28 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.64 6.28 -52.49 -0.33 1.31 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.08 1.55 5.93 -51.93 -0.31 1.24 16 30 H 0.03 0.78 7.07 -51.93 -0.37 0.41 16 31 H 0.04 1.09 5.92 -51.93 -0.31 0.79 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.40 5.56 9.11 45.56 0.42 5.97 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.06 0.92 7.08 -51.93 -0.37 0.55 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -32.92 308.14 -6.06 -38.98 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.68 Total: 2.69 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.67 Total: -10.26 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.74 Total: -25.32 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.07 Total: -27.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.92 -6.06 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057953861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.986 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds