Wall clock time and date at job start Mon Mar 30 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 117.00115 * 2 1 4 4 C 1.38858 * 119.98456 * 359.96955 * 3 2 1 5 5 C 1.38254 * 120.25069 * 179.72157 * 4 3 2 6 6 C 1.50694 * 119.89548 * 180.30049 * 5 4 3 7 7 C 1.37996 * 120.20769 * 0.56747 * 5 4 3 8 8 C 1.50700 * 120.01583 * 179.74357 * 7 5 4 9 9 C 1.50702 * 109.46869 * 269.71637 * 8 7 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.39614 * 119.96204 * 359.45836 * 7 5 4 18 18 C 1.47741 * 120.12334 * 180.27837 * 17 7 5 19 19 O 1.21466 * 119.99918 * 90.00177 * 18 17 7 20 20 O 1.34710 * 119.99966 * 270.00284 * 18 17 7 21 21 C 1.38447 * 119.98013 * 179.97438 * 3 2 1 22 22 C 1.50699 * 120.10511 * 0.02562 * 21 3 2 23 23 H 1.09002 * 109.46600 * 60.00029 * 1 2 3 24 24 H 1.08995 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47065 * 300.00378 * 1 2 3 26 26 H 1.08002 * 119.87575 * 0.02562 * 4 3 2 27 27 H 1.08995 * 109.47444 * 270.25956 * 6 5 4 28 28 H 1.08997 * 109.47091 * 30.26332 * 6 5 4 29 29 H 1.09000 * 109.46816 * 150.26039 * 6 5 4 30 30 H 1.09004 * 109.47210 * 149.71930 * 8 7 5 31 31 H 1.08994 * 109.47551 * 29.71583 * 8 7 5 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 0.96695 * 116.99806 * 179.97438 * 20 18 17 34 34 H 1.09000 * 109.47372 * 269.97849 * 22 21 3 35 35 H 1.09003 * 109.46775 * 29.98321 * 22 21 3 36 36 H 1.08999 * 109.46893 * 149.97494 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3753 -0.0006 5 6 1.9114 3.6100 0.0052 6 6 1.0826 4.8685 0.0113 7 6 3.2889 3.6937 -0.0002 8 6 3.9622 5.0418 0.0003 9 6 4.1873 5.4914 -1.4203 10 1 3.8736 4.8639 -2.2415 11 6 4.7879 6.7068 -1.6719 12 7 5.1695 7.4711 -0.6720 13 14 5.0599 7.2675 -3.4328 14 1 3.8772 8.0372 -3.8955 15 1 6.2674 8.1295 -3.4970 16 1 5.2512 6.0817 -4.3060 17 6 4.0582 2.5286 -0.0001 18 6 5.5331 2.6140 0.0004 19 8 6.1390 2.6490 1.0526 20 8 6.2059 2.6531 -1.1660 21 6 3.4287 1.2829 0.0005 22 6 4.2513 0.0202 0.0005 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2111 2.3162 -0.0007 27 1 0.8787 5.1743 -1.0148 28 1 0.1415 4.6812 0.5284 29 1 1.6280 5.6603 0.5248 30 1 4.9206 4.9691 0.5145 31 1 3.3283 5.7645 0.5140 32 1 5.5924 8.3260 -0.8490 33 1 7.1699 2.7093 -1.1150 34 1 4.4496 -0.2843 1.0282 35 1 3.7039 -0.7700 -0.5135 36 1 5.1953 0.2016 -0.5133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057953861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:01 Heat of formation + Delta-G solvation = -140.355879 kcal Electronic energy + Delta-G solvation = -20354.731440 eV Core-core repulsion = 17188.845768 eV Total energy + Delta-G solvation = -3165.885672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83889 -40.65955 -38.73933 -37.04331 -35.58762 -34.67173 -32.66754 -30.23768 -29.42762 -28.12566 -26.36886 -25.07365 -24.73263 -21.76894 -21.16264 -19.20150 -18.57714 -18.44872 -18.02266 -17.11083 -16.71029 -16.64415 -16.06379 -15.59725 -15.02201 -14.87171 -14.52385 -14.26447 -14.10501 -13.87583 -13.83739 -13.35882 -13.01894 -12.92419 -12.78099 -12.65916 -12.56889 -12.47255 -12.42917 -12.06972 -11.90702 -11.57053 -11.42351 -11.27160 -10.58273 -9.72131 -8.92313 -8.17585 -6.31108 0.03275 0.44364 1.07129 1.40143 1.41158 1.52965 2.01468 2.39173 2.51216 2.69619 3.12429 3.72372 3.86782 3.99242 4.18738 4.25976 4.43979 4.46810 4.49556 4.62186 4.65201 4.72319 4.79906 4.83908 4.86661 5.03120 5.12155 5.23723 5.28333 5.38045 5.42247 5.47216 5.71557 5.75721 5.86520 6.14526 6.45395 6.79274 6.93621 7.36863 8.90827 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.007158 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.532723 B = 3910.534938 C = 4669.004545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.171 4.171 5 C -0.064 4.064 6 C -0.106 4.106 7 C -0.064 4.064 8 C 0.057 3.943 9 C -0.511 4.511 10 H 0.055 0.945 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.102 4.102 18 C 0.557 3.443 19 O -0.546 6.546 20 O -0.498 6.498 21 C -0.099 4.099 22 C -0.102 4.102 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.065 0.935 26 H 0.167 0.833 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.054 0.946 30 H -0.015 1.015 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.424 0.576 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 -13.790 -0.890 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.189 4.189 5 C -0.064 4.064 6 C -0.162 4.162 7 C -0.065 4.065 8 C 0.021 3.979 9 C -0.549 4.549 10 H 0.073 0.927 11 C -0.190 4.190 12 N -0.571 5.571 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.103 4.103 18 C 0.401 3.599 19 O -0.438 6.438 20 O -0.310 6.310 21 C -0.100 4.100 22 C -0.158 4.158 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.084 0.916 26 H 0.185 0.815 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.004 0.996 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.284 0.716 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.637 -13.847 -0.607 16.881 hybrid contribution 1.170 1.065 -0.524 1.667 sum -8.467 -12.782 -1.131 15.373 Atomic orbital electron populations 1.23401 0.76298 1.05783 1.02380 1.86019 1.23441 1.25201 1.88927 1.18347 0.90636 0.85269 0.99005 1.21475 1.01433 0.90266 1.05721 1.19694 0.92004 0.96471 0.98244 1.20782 0.98844 0.93604 1.02960 1.20227 0.94229 0.94651 0.97352 1.18150 0.93611 0.89112 0.97039 1.21160 1.39055 1.03141 0.91575 0.92715 1.25845 0.95097 0.96616 1.01393 1.70095 1.41783 1.12184 1.32990 0.85507 0.77932 0.78347 0.79695 1.19397 1.20858 1.19044 1.18676 0.88866 0.94281 1.08467 1.20878 0.88969 0.69036 0.80997 1.90816 1.70656 1.48171 1.34124 1.84684 1.27890 1.84237 1.34152 1.19191 0.92274 0.93933 1.04584 1.20658 0.98343 0.93843 1.02948 0.91718 0.85795 0.91637 0.81527 0.90802 0.88783 0.92678 0.99633 0.95681 0.92674 0.71589 0.90558 0.88836 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.99 9.53 -92.49 -0.88 -8.87 16 3 C 0.11 3.49 6.65 22.47 0.15 3.64 16 4 C -0.17 -5.09 8.68 22.42 0.19 -4.89 16 5 C -0.06 -2.39 5.87 -19.92 -0.12 -2.51 16 6 C -0.11 -3.51 9.59 71.23 0.68 -2.82 16 7 C -0.06 -2.93 5.11 -19.59 -0.10 -3.03 16 8 C 0.06 3.13 4.30 29.10 0.13 3.25 16 9 C -0.51 -28.85 9.09 25.60 0.23 -28.62 16 10 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 11 C 0.01 0.49 5.46 84.66 0.46 0.95 16 12 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 13 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 C -0.10 -4.40 5.75 -20.11 -0.12 -4.52 16 18 C 0.56 24.68 4.69 70.33 0.33 25.01 16 19 O -0.55 -26.37 17.89 19.95 0.36 -26.01 16 20 O -0.50 -19.32 13.44 -56.19 -0.76 -20.07 16 21 C -0.10 -3.54 5.93 -19.49 -0.12 -3.66 16 22 C -0.10 -2.97 9.40 71.24 0.67 -2.31 16 23 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 24 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 26 H 0.17 3.50 6.28 -2.91 -0.02 3.48 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 29 H 0.05 2.13 5.93 -2.39 -0.01 2.11 16 30 H -0.01 -0.89 7.07 -2.38 -0.02 -0.91 16 31 H 0.03 1.41 5.92 -2.39 -0.01 1.40 16 32 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 33 H 0.42 11.95 9.11 -74.06 -0.67 11.28 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.33 7.53 -2.39 -0.02 2.32 16 36 H 0.06 1.70 7.08 -2.39 -0.02 1.69 16 Total: -1.00 -73.85 308.14 4.98 -68.87 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.44 Total: 13.98 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.51 Total: -18.16 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.28 Total: -55.81 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -1.28 Total: -54.96 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -73.85 4.98 -68.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057953861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.487 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds