Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.92411 * 2 1 4 4 C 1.38076 * 120.07334 * 180.27091 * 3 2 1 5 5 C 1.38939 * 119.92510 * 359.45467 * 4 3 2 6 6 N 1.39667 * 120.07450 * 180.26820 * 5 4 3 7 7 C 1.46896 * 111.00433 * 295.95240 * 6 5 4 8 8 C 1.46902 * 110.99995 * 59.90822 * 6 5 4 9 9 H 1.08998 * 109.47017 * 295.34958 * 8 6 5 10 10 C 1.53001 * 109.47399 * 175.34645 * 8 6 5 11 11 C 1.50701 * 109.47148 * 55.34703 * 8 6 5 12 12 H 1.08004 * 120.00166 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00125 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00127 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00165 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47011 * 60.00303 * 15 13 11 17 17 H 1.48497 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47295 * 300.00535 * 15 13 11 19 19 C 1.38892 * 119.84659 * 0.52373 * 5 4 3 20 20 N 1.48003 * 120.03565 * 179.77062 * 19 5 4 21 21 O 1.21798 * 120.00364 * 179.97438 * 20 19 5 22 22 O 1.21810 * 120.00011 * 359.97438 * 20 19 5 23 23 C 1.38119 * 119.92480 * 359.74882 * 19 5 4 24 24 H 1.09000 * 109.47197 * 89.99931 * 1 2 3 25 25 H 1.08996 * 109.47407 * 210.00291 * 1 2 3 26 26 H 1.09005 * 109.47611 * 330.00412 * 1 2 3 27 27 H 1.08001 * 119.96079 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.03961 * 179.72007 * 4 3 2 29 29 H 1.09001 * 109.47069 * 60.00372 * 7 6 5 30 30 H 1.09001 * 109.47129 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47176 * 299.99876 * 7 6 5 32 32 H 1.08997 * 109.47121 * 305.97553 * 10 8 6 33 33 H 1.09002 * 109.46943 * 65.97467 * 10 8 6 34 34 H 1.08998 * 109.47070 * 185.97172 * 10 8 6 35 35 H 0.97000 * 120.00741 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.96365 * 180.02562 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2023 -0.0056 5 6 4.2740 0.0000 0.0001 6 7 5.6707 0.0000 0.0001 7 6 6.1971 0.5943 -1.2359 8 6 6.1971 0.6934 1.1834 9 1 5.9165 1.7458 1.1426 10 6 7.7221 0.5727 1.2088 11 6 5.6230 0.0684 2.4287 12 1 4.9360 -0.7612 2.3491 13 6 5.9754 0.5550 3.6697 14 7 6.8123 1.5648 3.7666 15 14 5.2632 -0.2193 5.2133 16 1 5.6443 -1.6534 5.2688 17 1 5.7954 0.4815 6.4094 18 1 3.7831 -0.1011 5.1887 19 6 3.5779 -1.2019 0.0005 20 7 4.3154 -2.4851 0.0016 21 8 3.7044 -3.5387 0.0024 22 8 5.5335 -2.4875 0.0015 23 6 2.1967 -1.1982 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6551 2.1329 0.0004 28 1 4.1159 2.1386 -0.0102 29 1 5.8477 1.6231 -1.3219 30 1 7.2868 0.5821 -1.2094 31 1 5.8477 0.0189 -2.0931 32 1 8.0046 -0.4779 1.1426 33 1 8.1438 1.1163 0.3633 34 1 8.1045 0.9939 2.1386 35 1 7.0600 1.9074 4.6396 36 1 1.6548 -2.1325 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = 36.731090 kcal Electronic energy + Delta-G solvation = -20869.855336 eV Core-core repulsion = 17743.941482 eV Total energy + Delta-G solvation = -3125.913854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39400 -39.55578 -36.99718 -35.55111 -33.22549 -31.99253 -31.23770 -29.05242 -27.20665 -26.10412 -24.98183 -24.07017 -22.45410 -21.12187 -19.69681 -18.14684 -17.70827 -16.82467 -16.66665 -15.99055 -15.27085 -14.97218 -14.24975 -14.05000 -13.86034 -13.65348 -13.29250 -12.51572 -12.25828 -12.14033 -12.04621 -11.78887 -11.43213 -11.09704 -10.81017 -10.80291 -10.70667 -10.43018 -10.39399 -10.26278 -10.22139 -10.05204 -9.15590 -9.08999 -8.56769 -8.37170 -7.57568 -6.12993 -4.17994 0.52783 1.32073 2.04372 2.23829 3.26245 3.30205 3.35852 3.66639 4.27300 4.45168 4.73341 4.87498 5.09697 5.19228 5.21180 5.37710 5.50343 5.56949 5.75369 5.77231 5.86227 5.92411 6.07804 6.27301 6.34872 6.43688 6.66636 6.73361 6.91377 6.96642 7.16237 7.28661 7.57327 7.68671 8.03949 8.14176 8.34084 8.54922 8.84246 9.47068 10.92803 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.008765 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.802208 B = 3193.849481 C = 3487.631373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.144 4.144 5 C 0.212 3.788 6 N -0.504 5.504 7 C 0.032 3.968 8 C 0.221 3.779 9 H 0.006 0.994 10 C -0.134 4.134 11 C -0.504 4.504 12 H 0.052 0.948 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.278 1.278 19 C -0.032 4.032 20 N 0.033 4.967 21 O -0.231 6.231 22 O -0.082 6.082 23 C -0.060 4.060 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.010 0.990 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 1.289 -8.633 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.083 4.083 4 C -0.165 4.165 5 C 0.115 3.885 6 N -0.227 5.227 7 C -0.114 4.114 8 C 0.118 3.882 9 H 0.024 0.976 10 C -0.192 4.192 11 C -0.542 4.542 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.204 1.204 19 C -0.117 4.117 20 N 0.554 4.446 21 O -0.427 6.427 22 O -0.318 6.318 23 C -0.080 4.080 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.166 1.439 -8.458 12.555 hybrid contribution -0.368 0.131 1.022 1.094 sum -9.535 1.570 -7.436 12.193 Atomic orbital electron populations 1.20723 0.90094 1.03172 1.02352 1.19699 0.96528 0.91821 1.03172 1.21230 0.93996 0.97843 0.95199 1.21745 0.94521 0.98534 1.01692 1.18554 0.91743 0.89666 0.88492 1.60121 1.00751 1.57270 1.04509 1.22373 1.01808 0.96027 0.91222 1.19422 0.92934 0.91267 0.84606 0.97628 1.21850 0.96411 0.99998 1.00986 1.20935 1.26772 1.16534 0.89955 0.92969 1.24829 0.94990 0.94890 0.98899 1.69846 1.33488 1.24906 1.24482 0.86636 0.79286 0.79850 0.82273 1.19917 1.21002 1.20401 1.21105 0.91723 0.83524 1.15331 1.43328 1.01551 1.01964 0.97797 1.94437 1.70328 1.20324 1.57639 1.94627 0.94508 1.94036 1.48638 1.20711 0.91015 0.99704 0.96527 0.91115 0.91298 0.91181 0.85016 0.84356 0.96095 0.90014 0.92850 0.93809 0.97056 0.89090 0.92680 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 2 C -0.11 -1.53 5.88 -104.59 -0.62 -2.14 16 3 C -0.06 -0.90 9.69 -39.61 -0.38 -1.28 16 4 C -0.14 -2.47 8.62 -39.38 -0.34 -2.81 16 5 C 0.21 4.23 3.43 -83.79 -0.29 3.94 16 6 N -0.50 -10.72 2.49 -172.68 -0.43 -11.15 16 7 C 0.03 0.56 9.11 60.06 0.55 1.11 16 8 C 0.22 5.35 1.76 -68.86 -0.12 5.23 16 9 H 0.01 0.16 7.29 -51.93 -0.38 -0.22 16 10 C -0.13 -3.18 8.65 37.16 0.32 -2.86 16 11 C -0.50 -13.69 8.04 -34.44 -0.28 -13.97 16 12 H 0.05 1.49 6.91 -52.48 -0.36 1.13 16 13 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 14 N -0.89 -24.59 11.29 55.43 0.63 -23.96 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.03 -0.64 6.49 -79.76 -0.52 -1.16 16 20 N 0.03 0.72 4.45 34.06 0.15 0.87 16 21 O -0.23 -4.95 18.45 -29.46 -0.54 -5.50 16 22 O -0.08 -1.91 17.10 -29.46 -0.50 -2.42 16 23 C -0.06 -0.98 9.20 -39.62 -0.36 -1.34 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.14 2.28 7.06 -52.49 -0.37 1.91 16 29 H 0.02 0.33 7.35 -51.93 -0.38 -0.05 16 30 H 0.08 1.38 6.25 -51.93 -0.32 1.06 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.01 0.22 6.66 -51.93 -0.35 -0.12 16 34 H 0.09 2.36 5.93 -51.93 -0.31 2.06 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.14 2.10 7.61 -52.48 -0.40 1.70 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -30.04 302.82 -7.46 -37.51 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.54 Total: -2.33 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.77 Total: -14.23 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.35 Total: -34.24 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -1.05 Total: -7.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.04 -7.46 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.239 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds