Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.92411 * 2 1 4 4 C 1.38076 * 120.07334 * 180.27091 * 3 2 1 5 5 C 1.38939 * 119.92510 * 359.45467 * 4 3 2 6 6 N 1.39667 * 120.07450 * 180.26820 * 5 4 3 7 7 C 1.46896 * 111.00433 * 295.95240 * 6 5 4 8 8 C 1.46902 * 110.99995 * 59.90822 * 6 5 4 9 9 H 1.08998 * 109.47017 * 295.34958 * 8 6 5 10 10 C 1.53001 * 109.47399 * 175.34645 * 8 6 5 11 11 C 1.50701 * 109.47148 * 55.34703 * 8 6 5 12 12 H 1.08004 * 120.00166 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00125 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00127 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00165 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47011 * 60.00303 * 15 13 11 17 17 H 1.48497 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47295 * 300.00535 * 15 13 11 19 19 C 1.38892 * 119.84659 * 0.52373 * 5 4 3 20 20 N 1.48003 * 120.03565 * 179.77062 * 19 5 4 21 21 O 1.21798 * 120.00364 * 179.97438 * 20 19 5 22 22 O 1.21810 * 120.00011 * 359.97438 * 20 19 5 23 23 C 1.38119 * 119.92480 * 359.74882 * 19 5 4 24 24 H 1.09000 * 109.47197 * 89.99931 * 1 2 3 25 25 H 1.08996 * 109.47407 * 210.00291 * 1 2 3 26 26 H 1.09005 * 109.47611 * 330.00412 * 1 2 3 27 27 H 1.08001 * 119.96079 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.03961 * 179.72007 * 4 3 2 29 29 H 1.09001 * 109.47069 * 60.00372 * 7 6 5 30 30 H 1.09001 * 109.47129 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47176 * 299.99876 * 7 6 5 32 32 H 1.08997 * 109.47121 * 305.97553 * 10 8 6 33 33 H 1.09002 * 109.46943 * 65.97467 * 10 8 6 34 34 H 1.08998 * 109.47070 * 185.97172 * 10 8 6 35 35 H 0.97000 * 120.00741 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.96365 * 180.02562 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2023 -0.0056 5 6 4.2740 0.0000 0.0001 6 7 5.6707 0.0000 0.0001 7 6 6.1971 0.5943 -1.2359 8 6 6.1971 0.6934 1.1834 9 1 5.9165 1.7458 1.1426 10 6 7.7221 0.5727 1.2088 11 6 5.6230 0.0684 2.4287 12 1 4.9360 -0.7612 2.3491 13 6 5.9754 0.5550 3.6697 14 7 6.8123 1.5648 3.7666 15 14 5.2632 -0.2193 5.2133 16 1 5.6443 -1.6534 5.2688 17 1 5.7954 0.4815 6.4094 18 1 3.7831 -0.1011 5.1887 19 6 3.5779 -1.2019 0.0005 20 7 4.3154 -2.4851 0.0016 21 8 3.7044 -3.5387 0.0024 22 8 5.5335 -2.4875 0.0015 23 6 2.1967 -1.1982 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6551 2.1329 0.0004 28 1 4.1159 2.1386 -0.0102 29 1 5.8477 1.6231 -1.3219 30 1 7.2868 0.5821 -1.2094 31 1 5.8477 0.0189 -2.0931 32 1 8.0046 -0.4779 1.1426 33 1 8.1438 1.1163 0.3633 34 1 8.1045 0.9939 2.1386 35 1 7.0600 1.9074 4.6396 36 1 1.6548 -2.1325 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = 20.777979 kcal Electronic energy + Delta-G solvation = -20870.547115 eV Core-core repulsion = 17743.941482 eV Total energy + Delta-G solvation = -3126.605633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.99113 -40.97094 -38.47417 -37.22415 -35.09341 -33.38162 -32.55490 -30.80878 -28.55385 -27.61456 -26.77430 -25.56579 -23.86241 -22.60586 -21.38335 -19.69027 -19.24857 -18.63827 -18.30983 -17.60616 -16.82044 -16.57156 -15.78469 -15.50843 -15.20713 -14.95471 -14.63273 -13.93728 -13.87024 -13.33622 -13.18361 -13.06802 -12.92833 -12.76630 -12.61282 -12.51025 -12.40256 -12.29383 -12.23459 -11.97170 -11.93464 -11.89096 -11.05856 -10.60985 -10.43229 -9.66408 -9.17535 -8.19949 -6.30084 -0.96641 0.05818 0.53905 0.73609 1.30501 1.34206 1.40894 2.32630 2.38059 2.93695 3.09585 3.55669 3.77296 3.95429 4.05863 4.07744 4.36022 4.48828 4.53151 4.66645 4.73354 4.84266 4.86553 4.93013 5.03725 5.06609 5.13029 5.16488 5.29914 5.40583 5.46025 5.58305 5.62004 5.76822 6.19674 6.31943 6.53510 6.78132 6.86418 7.37323 8.84731 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.008765 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.802208 B = 3193.849481 C = 3487.631373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C -0.048 4.048 4 C -0.156 4.156 5 C 0.182 3.818 6 N -0.518 5.518 7 C 0.033 3.967 8 C 0.231 3.769 9 H -0.010 1.010 10 C -0.124 4.124 11 C -0.512 4.512 12 H 0.031 0.969 13 C 0.026 3.974 14 N -0.907 5.907 15 Si 0.940 3.060 16 H -0.283 1.283 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.059 4.059 20 N 0.035 4.965 21 O -0.218 6.218 22 O -0.142 6.142 23 C -0.066 4.066 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.176 0.824 28 H 0.140 0.860 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.265 0.735 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 2.320 -9.036 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.066 4.066 4 C -0.177 4.177 5 C 0.086 3.914 6 N -0.241 5.241 7 C -0.113 4.113 8 C 0.126 3.874 9 H 0.007 0.993 10 C -0.183 4.183 11 C -0.551 4.551 12 H 0.049 0.951 13 C -0.174 4.174 14 N -0.546 5.546 15 Si 0.766 3.234 16 H -0.209 1.209 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.144 4.144 20 N 0.550 4.450 21 O -0.421 6.421 22 O -0.364 6.364 23 C -0.085 4.085 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.193 0.807 28 H 0.158 0.842 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.921 2.499 -8.876 15.071 hybrid contribution 0.312 -0.186 1.074 1.134 sum -11.610 2.313 -7.802 14.177 Atomic orbital electron populations 1.20865 0.86441 1.04606 1.04277 1.20251 0.98847 0.90487 1.00046 1.21743 0.92769 0.99900 0.92233 1.21876 0.96121 0.97403 1.02297 1.18736 0.91193 0.90772 0.90714 1.59886 1.02304 1.57391 1.04510 1.22416 1.01747 0.96910 0.90190 1.19118 0.92820 0.90208 0.85230 0.99304 1.21683 0.96566 0.99181 1.00832 1.21061 1.26572 1.15892 0.91537 0.95074 1.25421 0.95463 0.95435 1.01077 1.69928 1.34096 1.25612 1.24980 0.85890 0.78932 0.78541 0.80017 1.20941 1.19748 1.19852 1.21430 0.92945 0.82106 1.17895 1.43708 1.01499 1.02823 0.96970 1.94376 1.70046 1.21392 1.56272 1.94624 0.95502 1.94466 1.51855 1.21093 0.89573 1.01679 0.96197 0.88756 0.90548 0.89161 0.80701 0.84237 0.94573 0.90023 0.91701 0.95165 0.94379 0.91476 0.92553 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.10 -2.25 5.88 -19.84 -0.12 -2.37 16 3 C -0.05 -1.16 9.69 22.25 0.22 -0.95 16 4 C -0.16 -5.11 8.62 22.40 0.19 -4.92 16 5 C 0.18 7.25 3.43 38.22 0.13 7.38 16 6 N -0.52 -22.47 2.49 -700.23 -1.74 -24.21 16 7 C 0.03 1.16 9.11 127.69 1.16 2.32 16 8 C 0.23 11.42 1.76 44.17 0.08 11.50 16 9 H -0.01 -0.54 7.29 -2.39 -0.02 -0.56 16 10 C -0.12 -6.04 8.65 71.98 0.62 -5.42 16 11 C -0.51 -28.46 8.04 25.60 0.21 -28.26 16 12 H 0.03 1.83 6.91 -2.91 -0.02 1.81 16 13 C 0.03 1.44 5.29 84.66 0.45 1.89 16 14 N -0.91 -50.72 11.29 21.45 0.24 -50.48 16 15 Si 0.94 44.62 29.54 68.60 2.03 46.64 16 16 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 C -0.06 -2.32 6.49 36.51 0.24 -2.09 16 20 N 0.04 1.59 4.45 -46.17 -0.21 1.38 16 21 O -0.22 -9.38 18.45 18.89 0.35 -9.03 16 22 O -0.14 -6.96 17.10 18.87 0.32 -6.63 16 23 C -0.07 -2.01 9.20 22.25 0.20 -1.81 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.09 0.98 8.08 -2.38 -0.02 0.96 16 27 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.14 4.44 7.06 -2.91 -0.02 4.42 16 29 H 0.04 1.13 7.35 -2.39 -0.02 1.11 16 30 H 0.08 2.77 6.25 -2.39 -0.01 2.75 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.58 6.66 -2.39 -0.02 1.56 16 34 H 0.07 3.58 5.93 -2.39 -0.01 3.56 16 35 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.16 4.26 7.61 -2.91 -0.02 4.24 16 Total: -1.00 -67.18 302.82 6.17 -61.01 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.09 Total: 4.80 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.09 Total: -23.48 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.70 Total: -73.30 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.67 Total: -15.67 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.18 6.17 -61.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.788 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds