Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38900 * 126.64419 * 2 1 4 4 C 1.41155 * 126.32244 * 359.94092 * 3 2 1 5 5 H 1.08002 * 119.99670 * 6.05080 * 4 3 2 6 6 C 1.39671 * 119.99977 * 186.05291 * 4 3 2 7 7 N 1.31030 * 120.00439 * 5.91660 * 6 4 3 8 8 Si 1.86807 * 119.99867 * 185.92152 * 6 4 3 9 9 H 1.48502 * 109.46665 * 265.03551 * 8 6 4 10 10 H 1.48504 * 109.47112 * 25.03292 * 8 6 4 11 11 H 1.48497 * 109.47033 * 145.03527 * 8 6 4 12 12 N 1.35566 * 107.35821 * 180.20743 * 3 2 1 13 13 C 1.32288 * 109.04074 * 359.62168 * 12 3 2 14 14 S 1.76381 * 141.21917 * 180.02562 * 13 12 3 15 15 C 1.75739 * 90.74496 * 180.32852 * 14 13 12 16 16 C 1.30804 * 109.93907 * 0.02562 * 15 14 13 17 17 C 1.50694 * 121.81992 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46772 * 274.05870 * 17 16 15 19 19 C 1.53001 * 109.47551 * 64.76341 * 18 17 16 20 20 C 1.53002 * 109.47155 * 184.76066 * 18 17 16 21 21 N 1.35642 * 109.65914 * 0.38589 * 13 12 3 22 22 H 1.09002 * 109.47260 * 95.81860 * 1 2 3 23 23 H 1.09005 * 109.46513 * 215.81820 * 1 2 3 24 24 H 1.08997 * 109.47138 * 335.81334 * 1 2 3 25 25 H 0.97001 * 120.00784 * 180.02562 * 7 6 4 26 26 H 1.07994 * 125.02649 * 179.97438 * 15 14 13 27 27 H 1.09008 * 109.47111 * 34.05443 * 17 16 15 28 28 H 1.08999 * 109.47999 * 154.05769 * 17 16 15 29 29 H 1.08995 * 109.47565 * 304.76155 * 18 17 16 30 30 H 1.09002 * 109.47251 * 294.04371 * 19 18 17 31 31 H 1.09004 * 109.46924 * 54.03513 * 19 18 17 32 32 H 1.08996 * 109.47571 * 174.03453 * 19 18 17 33 33 H 1.09006 * 109.47152 * 60.00238 * 20 18 17 34 34 H 1.09001 * 109.47329 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47629 * 300.00150 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3360 1.1145 0.0000 4 6 1.9226 2.4641 -0.0012 5 1 0.8750 2.7080 0.0964 6 6 2.8682 3.4841 -0.1286 7 7 4.1230 3.1887 -0.3630 8 14 2.3439 5.2696 0.0354 9 1 2.0757 5.8324 -1.3124 10 1 1.1112 5.3498 0.8597 11 1 3.4280 6.0457 0.6893 12 7 3.6156 0.6667 -0.0047 13 6 3.6100 -0.6561 0.0007 14 16 4.7089 -2.0358 0.0013 15 6 3.3486 -3.1485 0.0020 16 6 2.2248 -2.4791 0.0013 17 6 0.8869 -3.1726 0.0023 18 6 0.4810 -3.4997 -1.4362 19 6 1.4661 -4.5104 -2.0269 20 6 -0.9281 -4.0957 -1.4455 21 7 2.3307 -1.1070 0.0005 22 1 -0.3634 -0.1042 -1.0224 23 1 -0.3632 -0.8334 0.6015 24 1 -0.3633 0.9374 0.4210 25 1 4.7799 3.8970 -0.4511 26 1 3.4287 -4.2254 0.0022 27 1 0.9562 -4.0951 0.5789 28 1 0.1390 -2.5189 0.4511 29 1 0.4939 -2.5881 -2.0336 30 1 2.4493 -4.0488 -2.1182 31 1 1.5322 -5.3790 -1.3716 32 1 1.1188 -4.8236 -3.0114 33 1 -1.6300 -3.3757 -1.0248 34 1 -1.2171 -4.3292 -2.4703 35 1 -0.9410 -5.0074 -0.8482 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075395702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = 64.880454 kcal Electronic energy + Delta-G solvation = -17905.818487 eV Core-core repulsion = 15223.878152 eV Total energy + Delta-G solvation = -2681.940335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97906 -37.23484 -34.69395 -32.93367 -30.97579 -29.47460 -27.37846 -27.00107 -26.49309 -24.18026 -21.76169 -20.36744 -20.03062 -18.02512 -16.95278 -16.55673 -15.18219 -15.03509 -14.92617 -14.15840 -13.84414 -13.71146 -13.30175 -12.71138 -12.53701 -12.43237 -12.18578 -12.02871 -11.79394 -11.39446 -11.32208 -11.11183 -10.91070 -10.86493 -10.57924 -10.47768 -10.29402 -10.22820 -10.04439 -9.25054 -9.03190 -8.29016 -7.46607 -6.46926 -6.39972 -4.21270 1.90877 1.99932 2.58304 3.08091 3.17934 3.21853 3.43714 3.82470 4.09958 4.36385 4.87102 4.91469 4.97358 5.41446 5.51361 5.56582 5.62102 5.66200 5.77643 5.81929 5.86599 5.93206 6.01643 6.10868 6.26533 6.31410 6.37251 6.46898 6.50976 6.71735 6.88531 7.25611 7.45776 7.75315 8.16019 8.45445 8.89208 9.03231 9.61580 10.51239 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.006359 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.769098 B = 4402.072744 C = 5291.975042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.210 4.210 3 C 0.235 3.765 4 C -0.441 4.441 5 H 0.084 0.916 6 C 0.074 3.926 7 N -0.760 5.760 8 Si 0.907 3.093 9 H -0.272 1.272 10 H -0.263 1.263 11 H -0.278 1.278 12 N -0.419 5.419 13 C 0.123 3.877 14 S 0.108 5.892 15 C -0.282 4.282 16 C 0.113 3.887 17 C -0.060 4.060 18 C -0.091 4.091 19 C -0.149 4.149 20 C -0.144 4.144 21 N -0.394 5.394 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.066 0.934 25 H 0.272 0.728 26 H 0.173 0.827 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -12.088 -0.827 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.318 4.318 3 C 0.111 3.889 4 C -0.474 4.474 5 H 0.103 0.897 6 C -0.146 4.146 7 N -0.384 5.384 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.187 1.187 11 H -0.203 1.203 12 N -0.146 5.146 13 C -0.242 4.242 14 S 0.356 5.644 15 C -0.422 4.422 16 C -0.002 4.002 17 C -0.100 4.100 18 C -0.110 4.110 19 C -0.206 4.206 20 C -0.201 4.201 21 N -0.078 5.078 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.190 0.810 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.198 -11.567 -0.869 12.032 hybrid contribution -2.168 0.448 0.053 2.214 sum -5.365 -11.119 -0.816 12.373 Atomic orbital electron populations 1.19634 0.89199 1.00602 0.99183 1.21049 0.92247 0.83151 1.35349 1.18222 0.84989 0.92114 0.93542 1.18553 0.94550 0.87585 1.46731 0.89748 1.25863 0.94569 1.00942 0.93257 1.70077 1.01811 1.33988 1.32562 0.86327 0.79280 0.82184 0.78997 1.19770 1.18685 1.20315 1.71696 1.22685 1.00122 1.20091 1.26128 0.86330 0.97492 1.14255 1.83940 1.04885 0.90641 1.84932 1.24092 0.93959 1.03060 1.21068 1.18804 0.97043 0.82318 1.01996 1.20600 0.92072 0.99661 0.97651 1.21042 0.95088 0.99370 0.95471 1.21927 0.99950 0.98579 1.00189 1.21821 0.96006 1.00675 1.01636 1.43003 1.08109 1.02973 1.53668 0.94406 0.94648 0.91486 0.91701 0.81006 0.90049 0.90094 0.90894 0.91835 0.92824 0.92960 0.92609 0.92639 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.57 9.82 36.01 0.35 -0.21 16 2 C -0.21 -5.23 7.32 -79.58 -0.58 -5.81 16 3 C 0.24 6.71 6.64 -84.86 -0.56 6.14 16 4 C -0.44 -12.25 9.10 -37.94 -0.35 -12.59 16 5 H 0.08 2.18 7.13 -52.49 -0.37 1.80 16 6 C 0.07 2.00 5.48 -17.36 -0.10 1.91 16 7 N -0.76 -21.67 11.99 55.53 0.67 -21.00 16 8 Si 0.91 19.60 29.56 -169.99 -5.03 14.57 16 9 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 N -0.42 -12.30 9.64 -10.93 -0.11 -12.40 16 13 C 0.12 3.13 8.89 -88.32 -0.79 2.34 16 14 S 0.11 2.10 23.37 -107.50 -2.51 -0.41 16 15 C -0.28 -4.66 8.97 29.07 0.26 -4.40 16 16 C 0.11 2.07 5.71 -81.66 -0.47 1.60 16 17 C -0.06 -0.85 4.88 -27.89 -0.14 -0.99 16 18 C -0.09 -1.16 2.91 -90.62 -0.26 -1.42 16 19 C -0.15 -1.71 8.50 37.16 0.32 -1.39 16 20 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 21 N -0.39 -9.15 3.14 -54.35 -0.17 -9.32 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.62 5.99 -51.93 -0.31 0.31 16 24 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 25 H 0.27 7.08 8.30 -40.82 -0.34 6.75 16 26 H 0.17 2.18 7.96 -52.49 -0.42 1.76 16 27 H 0.08 0.96 8.12 -51.92 -0.42 0.54 16 28 H 0.08 1.22 5.57 -51.93 -0.29 0.93 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -31.76 300.34 -9.21 -40.97 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.63 Total: -0.97 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.97 Total: -15.96 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.39 Total: -42.73 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.51 Total: -0.41 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.76 -9.21 -40.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.854 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds