Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38900 * 126.64419 * 2 1 4 4 C 1.41155 * 126.32244 * 359.94092 * 3 2 1 5 5 H 1.08002 * 119.99670 * 6.05080 * 4 3 2 6 6 C 1.39671 * 119.99977 * 186.05291 * 4 3 2 7 7 N 1.31030 * 120.00439 * 5.91660 * 6 4 3 8 8 Si 1.86807 * 119.99867 * 185.92152 * 6 4 3 9 9 H 1.48502 * 109.46665 * 265.03551 * 8 6 4 10 10 H 1.48504 * 109.47112 * 25.03292 * 8 6 4 11 11 H 1.48497 * 109.47033 * 145.03527 * 8 6 4 12 12 N 1.35566 * 107.35821 * 180.20743 * 3 2 1 13 13 C 1.32288 * 109.04074 * 359.62168 * 12 3 2 14 14 S 1.76381 * 141.21917 * 180.02562 * 13 12 3 15 15 C 1.75739 * 90.74496 * 180.32852 * 14 13 12 16 16 C 1.30804 * 109.93907 * 0.02562 * 15 14 13 17 17 C 1.50694 * 121.81992 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46772 * 274.05870 * 17 16 15 19 19 C 1.53001 * 109.47551 * 64.76341 * 18 17 16 20 20 C 1.53002 * 109.47155 * 184.76066 * 18 17 16 21 21 N 1.35642 * 109.65914 * 0.38589 * 13 12 3 22 22 H 1.09002 * 109.47260 * 95.81860 * 1 2 3 23 23 H 1.09005 * 109.46513 * 215.81820 * 1 2 3 24 24 H 1.08997 * 109.47138 * 335.81334 * 1 2 3 25 25 H 0.97001 * 120.00784 * 180.02562 * 7 6 4 26 26 H 1.07994 * 125.02649 * 179.97438 * 15 14 13 27 27 H 1.09008 * 109.47111 * 34.05443 * 17 16 15 28 28 H 1.08999 * 109.47999 * 154.05769 * 17 16 15 29 29 H 1.08995 * 109.47565 * 304.76155 * 18 17 16 30 30 H 1.09002 * 109.47251 * 294.04371 * 19 18 17 31 31 H 1.09004 * 109.46924 * 54.03513 * 19 18 17 32 32 H 1.08996 * 109.47571 * 174.03453 * 19 18 17 33 33 H 1.09006 * 109.47152 * 60.00238 * 20 18 17 34 34 H 1.09001 * 109.47329 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47629 * 300.00150 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3360 1.1145 0.0000 4 6 1.9226 2.4641 -0.0012 5 1 0.8750 2.7080 0.0964 6 6 2.8682 3.4841 -0.1286 7 7 4.1230 3.1887 -0.3630 8 14 2.3439 5.2696 0.0354 9 1 2.0757 5.8324 -1.3124 10 1 1.1112 5.3498 0.8597 11 1 3.4280 6.0457 0.6893 12 7 3.6156 0.6667 -0.0047 13 6 3.6100 -0.6561 0.0007 14 16 4.7089 -2.0358 0.0013 15 6 3.3486 -3.1485 0.0020 16 6 2.2248 -2.4791 0.0013 17 6 0.8869 -3.1726 0.0023 18 6 0.4810 -3.4997 -1.4362 19 6 1.4661 -4.5104 -2.0269 20 6 -0.9281 -4.0957 -1.4455 21 7 2.3307 -1.1070 0.0005 22 1 -0.3634 -0.1042 -1.0224 23 1 -0.3632 -0.8334 0.6015 24 1 -0.3633 0.9374 0.4210 25 1 4.7799 3.8970 -0.4511 26 1 3.4287 -4.2254 0.0022 27 1 0.9562 -4.0951 0.5789 28 1 0.1390 -2.5189 0.4511 29 1 0.4939 -2.5881 -2.0336 30 1 2.4493 -4.0488 -2.1182 31 1 1.5322 -5.3790 -1.3716 32 1 1.1188 -4.8236 -3.0114 33 1 -1.6300 -3.3757 -1.0248 34 1 -1.2171 -4.3292 -2.4703 35 1 -0.9410 -5.0074 -0.8482 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075395702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = 46.823580 kcal Electronic energy + Delta-G solvation = -17906.601492 eV Core-core repulsion = 15223.878152 eV Total energy + Delta-G solvation = -2682.723340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.74079 -38.57500 -36.16263 -34.74917 -32.75668 -31.12960 -28.74871 -28.25966 -27.81725 -25.98878 -23.36607 -22.14220 -21.19976 -19.65392 -18.62707 -18.44486 -16.84603 -16.59930 -16.22167 -15.75428 -15.21402 -14.92694 -14.88118 -14.21529 -13.95958 -13.81848 -13.48158 -13.31357 -13.04514 -12.96790 -12.76868 -12.62873 -12.39190 -12.29563 -12.11588 -11.84516 -11.68930 -11.58474 -11.52053 -11.00051 -10.84621 -10.22265 -9.31635 -8.37124 -8.16875 -6.24269 0.30265 0.34839 1.05101 1.38529 1.40304 1.55732 1.70875 2.18334 2.31591 2.40128 3.55328 3.69528 3.92172 4.01301 4.11344 4.33829 4.47367 4.52244 4.63060 4.70191 4.77386 4.86539 4.88319 4.90108 5.01234 5.05008 5.11179 5.22468 5.28169 5.38352 5.46589 5.48138 5.61425 5.89025 6.21299 6.61553 6.98518 7.04142 7.70337 8.60750 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.006359 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.769098 B = 4402.072744 C = 5291.975042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.201 4.201 3 C 0.184 3.816 4 C -0.479 4.479 5 H 0.091 0.909 6 C 0.024 3.976 7 N -0.814 5.814 8 Si 0.989 3.011 9 H -0.264 1.264 10 H -0.252 1.252 11 H -0.275 1.275 12 N -0.480 5.480 13 C 0.080 3.920 14 S 0.131 5.869 15 C -0.245 4.245 16 C 0.083 3.917 17 C -0.054 4.054 18 C -0.088 4.088 19 C -0.147 4.147 20 C -0.139 4.139 21 N -0.397 5.397 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.274 0.726 26 H 0.224 0.776 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -14.948 -0.552 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.310 4.310 3 C 0.059 3.941 4 C -0.513 4.513 5 H 0.109 0.891 6 C -0.192 4.192 7 N -0.440 5.440 8 Si 0.809 3.191 9 H -0.189 1.189 10 H -0.176 1.176 11 H -0.200 1.200 12 N -0.207 5.207 13 C -0.284 4.284 14 S 0.379 5.621 15 C -0.383 4.383 16 C -0.028 4.028 17 C -0.094 4.094 18 C -0.107 4.107 19 C -0.205 4.205 20 C -0.196 4.196 21 N -0.079 5.079 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.241 0.759 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.866 -14.512 -0.596 15.318 hybrid contribution -1.641 0.997 -0.051 1.921 sum -6.507 -13.515 -0.647 15.014 Atomic orbital electron populations 1.19704 0.86108 1.01809 1.00454 1.21677 0.94148 0.83151 1.32067 1.18785 0.85913 0.93692 0.95672 1.18904 0.95207 0.88422 1.48738 0.89089 1.26853 0.94261 1.05800 0.92255 1.70233 1.03265 1.35428 1.35045 0.85113 0.79009 0.75671 0.79280 1.18886 1.17551 1.19954 1.71519 1.23830 1.02597 1.22804 1.26934 0.88847 0.97935 1.14675 1.83808 1.05149 0.88850 1.84248 1.24804 0.91833 1.04790 1.16828 1.19565 0.99855 0.80329 1.03058 1.20756 0.89235 1.00414 0.99015 1.21010 0.97240 0.98473 0.93981 1.21918 0.98330 0.98830 1.01377 1.21780 0.93945 1.01270 1.02609 1.43248 1.07079 1.04718 1.52895 0.93222 0.91784 0.91530 0.91674 0.75913 0.86351 0.90997 0.94558 0.93807 0.90133 0.92069 0.92900 0.91921 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.91 9.82 71.24 0.70 -0.21 16 2 C -0.20 -10.19 7.32 41.75 0.31 -9.89 16 3 C 0.18 11.05 6.64 39.44 0.26 11.32 16 4 C -0.48 -27.98 9.10 23.33 0.21 -27.77 16 5 H 0.09 4.90 7.13 -2.91 -0.02 4.88 16 6 C 0.02 1.32 5.48 85.16 0.47 1.79 16 7 N -0.81 -49.27 11.99 21.78 0.26 -49.01 16 8 Si 0.99 41.90 29.56 68.60 2.03 43.92 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 N -0.48 -29.72 9.64 -188.48 -1.82 -31.54 16 13 C 0.08 4.20 8.89 179.54 1.60 5.80 16 14 S 0.13 5.00 23.37 -56.49 -1.32 3.68 16 15 C -0.24 -7.22 8.97 67.98 0.61 -6.61 16 16 C 0.08 2.85 5.71 41.81 0.24 3.09 16 17 C -0.05 -1.35 4.88 29.85 0.15 -1.20 16 18 C -0.09 -1.97 2.91 -10.79 -0.03 -2.00 16 19 C -0.15 -2.79 8.50 71.98 0.61 -2.18 16 20 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 21 N -0.40 -18.45 3.14 -325.85 -1.02 -19.48 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 2.13 5.99 -2.38 -0.01 2.12 16 24 H 0.07 2.62 7.31 -2.39 -0.02 2.60 16 25 H 0.27 15.15 8.30 -92.71 -0.77 14.38 16 26 H 0.22 4.24 7.96 -2.91 -0.02 4.22 16 27 H 0.12 2.09 8.12 -2.38 -0.02 2.07 16 28 H 0.07 1.93 5.57 -2.39 -0.01 1.92 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.99 6.52 -2.39 -0.02 0.98 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.93 300.34 5.00 -70.93 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.09 Total: 10.99 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 5.78 Total: -29.51 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -2.58 Total: -100.02 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -75.93 5.00 -70.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.758 kcal (2) G-P(sol) polarization free energy of solvation -75.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds