Wall clock time and date at job start Mon Mar 30 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75744 * 125.02826 * 2 1 4 4 C 1.76381 * 90.74058 * 180.02562 * 3 2 1 5 5 N 1.32282 * 141.21700 * 180.02562 * 4 3 2 6 6 C 1.35578 * 109.04313 * 179.97438 * 5 4 3 7 7 C 1.41153 * 126.32212 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00173 * 187.72289 * 7 6 5 9 9 C 1.39678 * 120.00298 * 7.72292 * 7 6 5 10 10 N 1.31037 * 119.99434 * 7.99226 * 9 7 6 11 11 Si 1.86791 * 120.00392 * 187.99315 * 9 7 6 12 12 H 1.48503 * 109.47286 * 94.96970 * 11 9 7 13 13 H 1.48499 * 109.47458 * 214.96685 * 11 9 7 14 14 H 1.48501 * 109.47030 * 334.97289 * 11 9 7 15 15 C 1.38899 * 107.35653 * 359.97438 * 6 5 4 16 16 C 1.50697 * 126.64620 * 180.02562 * 15 6 5 17 17 N 1.35648 * 109.12418 * 359.97438 * 4 3 2 18 18 C 1.30803 * 125.02769 * 180.02562 * 2 1 3 19 19 C 1.50700 * 121.82015 * 359.94929 * 18 2 1 20 20 C 1.53001 * 109.47072 * 293.28757 * 19 18 2 21 21 C 1.53001 * 109.47036 * 53.28598 * 19 18 2 22 22 H 1.08999 * 109.47016 * 354.96508 * 1 2 3 23 23 H 1.09002 * 109.46589 * 114.95922 * 1 2 3 24 24 H 1.08995 * 109.47169 * 234.96230 * 1 2 3 25 25 H 0.97010 * 119.99824 * 179.97438 * 10 9 7 26 26 H 1.09009 * 109.46706 * 269.97132 * 16 15 6 27 27 H 1.09006 * 109.47405 * 29.96569 * 16 15 6 28 28 H 1.08997 * 109.47251 * 149.97555 * 16 15 6 29 29 H 1.09006 * 109.47082 * 173.28049 * 19 18 2 30 30 H 1.08997 * 109.46811 * 65.01573 * 20 19 18 31 31 H 1.09003 * 109.46647 * 185.01416 * 20 19 18 32 32 H 1.08993 * 109.46991 * 305.01226 * 20 19 18 33 33 H 1.09000 * 109.47107 * 165.72551 * 21 19 18 34 34 H 1.08998 * 109.47091 * 285.72781 * 21 19 18 35 35 H 1.09007 * 109.46778 * 45.72568 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5158 1.4391 0.0000 4 6 3.9731 0.4455 -0.0008 5 7 5.2918 0.5492 -0.0009 6 6 5.8333 -0.6938 -0.0011 7 6 7.2098 -1.0061 -0.0008 8 1 7.5315 -2.0295 -0.1268 9 6 8.1561 0.0082 0.1624 10 7 7.7693 1.2216 0.4709 11 14 9.9730 -0.3649 -0.0589 12 1 10.3802 -0.0357 -1.4486 13 1 10.7658 0.4509 0.8955 14 1 10.2173 -1.8066 0.2001 15 6 4.7833 -1.6031 -0.0006 16 6 4.8950 -3.1060 -0.0001 17 7 3.6183 -0.8638 -0.0004 18 6 2.2578 -1.0711 -0.0005 19 6 1.6653 -2.4567 0.0000 20 6 0.9414 -2.7014 1.3256 21 6 0.6710 -2.5867 -1.1556 22 1 -0.3633 1.0237 0.0902 23 1 -0.3632 -0.4337 -0.9317 24 1 -0.3633 -0.5900 0.8414 25 1 8.4265 1.9260 0.5846 26 1 4.9212 -3.4687 -1.0278 27 1 5.8099 -3.4023 0.5131 28 1 4.0347 -3.5341 0.5144 29 1 2.4608 -3.1921 -0.1207 30 1 0.0910 -2.0243 1.4054 31 1 0.5897 -3.7324 1.3625 32 1 1.6278 -2.5217 2.1529 33 1 0.4351 -3.6388 -1.3153 34 1 -0.2415 -2.0424 -0.9127 35 1 1.1114 -2.1713 -2.0622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075395707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:02 Heat of formation + Delta-G solvation = 55.284429 kcal Electronic energy + Delta-G solvation = -18068.790417 eV Core-core repulsion = 15386.433968 eV Total energy + Delta-G solvation = -2682.356450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.79804 -38.95044 -35.66529 -34.17929 -32.97953 -32.03310 -29.04758 -28.08628 -27.63842 -25.99019 -24.14446 -21.76431 -21.44983 -19.77144 -18.85488 -18.22942 -16.91668 -16.65410 -16.11424 -15.40971 -15.11780 -14.90320 -14.67622 -14.22186 -14.01202 -13.92682 -13.64877 -13.42546 -13.16702 -12.98913 -12.89443 -12.63404 -12.50258 -12.41906 -12.11358 -12.02604 -11.82516 -11.73854 -11.14468 -10.92627 -10.78204 -10.24812 -9.24567 -8.40502 -8.18456 -6.26071 0.26682 0.31108 0.97860 1.37406 1.39227 1.54649 1.68867 2.15894 2.30161 2.37689 3.52955 3.59524 3.95553 4.03584 4.19771 4.31727 4.39037 4.49550 4.61494 4.62588 4.82018 4.83601 4.85710 4.91090 4.96009 5.02760 5.10106 5.11745 5.25618 5.33234 5.39232 5.46166 5.64419 5.88804 6.19547 6.59793 6.96792 7.02048 7.67531 8.58799 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.006388 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.201779 B = 4381.841447 C = 5117.969819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.215 4.215 3 S 0.125 5.875 4 C 0.080 3.920 5 N -0.481 5.481 6 C 0.186 3.814 7 C -0.479 4.479 8 H 0.091 0.909 9 C 0.024 3.976 10 N -0.814 5.814 11 Si 0.991 3.009 12 H -0.268 1.268 13 H -0.272 1.272 14 H -0.250 1.250 15 C -0.204 4.204 16 C -0.025 4.025 17 N -0.396 5.396 18 C 0.074 3.926 19 C -0.042 4.042 20 C -0.140 4.140 21 C -0.144 4.144 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.274 0.726 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -7.179 -0.692 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.335 4.335 3 S 0.374 5.626 4 C -0.284 4.284 5 N -0.209 5.209 6 C 0.061 3.939 7 C -0.513 4.513 8 H 0.109 0.891 9 C -0.191 4.191 10 N -0.440 5.440 11 Si 0.811 3.189 12 H -0.193 1.193 13 H -0.197 1.197 14 H -0.173 1.173 15 C -0.314 4.314 16 C -0.083 4.083 17 N -0.078 5.078 18 C -0.037 4.037 19 C -0.063 4.063 20 C -0.198 4.198 21 C -0.201 4.201 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.299 -4.910 -0.632 16.080 hybrid contribution 1.437 -1.519 -0.038 2.092 sum -13.861 -6.429 -0.670 15.295 Atomic orbital electron populations 1.20723 0.82967 1.04302 1.04847 1.23614 1.02005 0.92009 1.15884 1.83735 0.88129 1.06080 1.84652 1.26823 0.98905 0.87746 1.14918 1.71487 1.00489 1.25993 1.22934 1.18771 0.93885 0.85627 0.95641 1.18900 0.88313 0.95678 1.48450 0.89076 1.26876 1.06062 0.94058 0.92146 1.70230 1.37073 1.02586 1.34160 0.85086 0.75435 0.79767 0.78617 1.19309 1.19713 1.17280 1.21729 0.82081 0.95342 1.32202 1.19731 1.01641 0.86148 1.00747 1.43205 1.04796 1.06996 1.52800 1.19538 0.80033 0.99668 1.04419 1.20196 0.98608 0.88298 0.99211 1.21906 1.00384 1.03860 0.93611 1.22034 0.98995 1.03713 0.95362 0.90143 0.88036 0.88184 0.91606 0.92885 0.91612 0.91718 0.90929 0.89603 0.89304 0.94939 0.89901 0.88704 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 8.41 71.24 0.60 -0.70 16 2 C -0.21 -6.79 6.14 25.85 0.16 -6.63 16 3 S 0.13 4.99 23.35 -56.49 -1.32 3.67 16 4 C 0.08 4.33 8.89 179.54 1.60 5.92 16 5 N -0.48 -30.35 9.69 -188.47 -1.83 -32.17 16 6 C 0.19 11.33 6.62 39.44 0.26 11.59 16 7 C -0.48 -28.36 9.06 23.33 0.21 -28.15 16 8 H 0.09 4.97 7.45 -2.91 -0.02 4.95 16 9 C 0.02 1.35 5.48 85.16 0.47 1.82 16 10 N -0.81 -49.75 12.04 21.79 0.26 -49.49 16 11 Si 0.99 42.27 29.57 68.60 2.03 44.29 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 15 C -0.20 -10.63 7.31 41.75 0.31 -10.32 16 16 C -0.02 -1.01 9.42 71.24 0.67 -0.34 16 17 N -0.40 -19.14 3.14 -325.85 -1.02 -20.16 16 18 C 0.07 2.68 5.60 41.81 0.23 2.92 16 19 C -0.04 -1.10 3.09 -11.54 -0.04 -1.13 16 20 C -0.14 -2.86 8.95 71.98 0.64 -2.22 16 21 C -0.14 -2.73 8.37 71.98 0.60 -2.12 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.10 1.48 5.88 -2.39 -0.01 1.47 16 24 H 0.10 1.45 5.42 -2.39 -0.01 1.44 16 25 H 0.27 15.29 8.30 -92.70 -0.77 14.52 16 26 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.07 2.65 7.67 -2.38 -0.02 2.64 16 28 H 0.06 2.24 6.15 -2.39 -0.01 2.22 16 29 H 0.07 2.13 5.05 -2.38 -0.01 2.12 16 30 H 0.09 1.37 5.13 -2.39 -0.01 1.36 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.29 4.97 -2.39 -0.01 1.28 16 35 H 0.04 0.91 8.06 -2.38 -0.02 0.89 16 Total: -1.00 -78.82 291.24 4.95 -73.87 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.12 Total: 9.36 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 5.72 Total: -29.37 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -2.59 Total: -101.83 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.32 Total: 3.67 kcal Total: -78.82 4.95 -73.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.155 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds