Wall clock time and date at job start Mon Mar 30 2020 06:21:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38619 * 120.39477 * 2 1
4 4 C 1.38624 * 118.56999 * 180.02562 * 3 2 1
5 5 C 1.50699 * 120.40306 * 179.97438 * 4 3 2
6 6 N 1.32258 * 119.19957 * 359.97438 * 4 3 2
7 7 C 1.32549 * 120.73830 * 0.02562 * 6 4 3
8 8 S 1.76204 * 119.22515 * 179.97438 * 7 6 4
9 9 C 1.80996 * 99.99906 * 179.97438 * 8 7 6
10 10 C 1.53004 * 109.46955 * 184.44064 * 9 8 7
11 11 C 1.50700 * 115.55240 * 294.83166 * 10 9 8
12 12 H 1.07997 * 119.99622 * 114.81534 * 11 10 9
13 13 C 1.37879 * 119.99774 * 294.53883 * 11 10 9
14 14 N 1.31512 * 119.99413 * 175.16065 * 13 11 10
15 15 Si 1.86793 * 120.00191 * 355.16723 * 13 11 10
16 16 H 1.48496 * 109.47557 * 93.58368 * 15 13 11
17 17 H 1.48500 * 109.47128 * 213.58714 * 15 13 11
18 18 H 1.48505 * 109.47099 * 333.58574 * 15 13 11
19 19 C 1.53003 * 117.49610 * 80.50547 * 10 9 8
20 20 C 1.53004 * 117.49663 * 149.16023 * 10 9 8
21 21 N 1.32256 * 120.39886 * 180.27093 * 2 1 3
22 22 H 1.08993 * 109.47422 * 90.00351 * 1 2 3
23 23 H 1.09008 * 109.46786 * 210.00382 * 1 2 3
24 24 H 1.08999 * 109.47606 * 329.99818 * 1 2 3
25 25 H 1.08000 * 120.71614 * 0.02562 * 3 2 1
26 26 H 1.09002 * 109.46779 * 270.02730 * 5 4 3
27 27 H 1.09006 * 109.46765 * 30.01915 * 5 4 3
28 28 H 1.09000 * 109.47391 * 150.02225 * 5 4 3
29 29 H 1.08997 * 109.47176 * 64.44369 * 9 8 7
30 30 H 1.09001 * 109.47871 * 304.44029 * 9 8 7
31 31 H 0.97008 * 119.99661 * 179.97438 * 14 13 11
32 32 H 1.09002 * 117.49414 * 215.00270 * 19 10 9
33 33 H 1.08995 * 117.50075 * 0.02562 * 19 10 9
34 34 H 1.08996 * 117.50007 * 359.97438 * 20 10 9
35 35 H 1.09003 * 117.49497 * 144.97707 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2083 1.1957 0.0000
4 6 3.5939 1.1515 -0.0005
5 6 4.3975 2.4263 -0.0011
6 7 4.2020 -0.0229 -0.0005
7 6 3.5018 -1.1484 -0.0005
8 16 4.3531 -2.6912 -0.0012
9 6 2.9442 -3.8275 -0.0001
10 6 3.4503 -5.2671 0.1112
11 6 4.2624 -5.7628 -1.0574
12 1 5.3053 -6.0099 -0.9242
13 6 3.6726 -5.9063 -2.2954
14 7 4.4017 -6.2472 -3.3355
15 14 1.8381 -5.6166 -2.4952
16 1 1.6010 -4.2093 -2.9055
17 1 1.3027 -6.5321 -3.5346
18 1 1.1522 -5.8780 -1.2043
19 6 3.8309 -5.7765 1.5028
20 6 2.5523 -6.2782 0.8271
21 7 2.1762 -1.1407 -0.0054
22 1 -0.3634 -0.0001 -1.0276
23 1 -0.3633 -0.8900 0.5139
24 1 -0.3634 0.8899 0.5138
25 1 1.6866 2.1413 0.0004
26 1 4.5904 2.7337 -1.0290
27 1 3.8387 3.2083 0.5131
28 1 5.3446 2.2591 0.5120
29 1 2.3824 -3.7105 -0.9267
30 1 2.2971 -3.6033 0.8479
31 1 3.9866 -6.3485 -4.2064
32 1 4.6688 -6.4701 1.5730
33 1 3.7204 -5.0862 2.3391
34 1 1.6013 -5.9176 1.2191
35 1 2.5487 -7.3018 0.4524
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000088259733.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:21:39
Heat of formation + Delta-G solvation = 59.616816 kcal
Electronic energy + Delta-G solvation = -17346.192769 eV
Core-core repulsion = 14664.024186 eV
Total energy + Delta-G solvation = -2682.168583 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 264.099 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.72441 -36.97459 -34.70362 -33.14860 -32.14383 -29.43722 -28.07765 -27.53039
-25.43781 -24.16762 -21.61073 -21.57632 -19.16410 -17.54518 -17.30800 -16.14757
-15.52306 -15.31428 -14.94042 -14.28165 -13.79834 -13.55708 -13.44157 -13.22943
-13.08215 -12.79801 -12.63182 -12.44048 -12.20219 -12.03617 -11.16936 -10.82048
-10.71495 -10.51591 -10.26641 -10.19951 -9.90553 -9.70893 -9.52956 -9.11454
-9.05424 -8.66617 -8.41067 -7.13448 -6.12903 -4.15040 0.96611 1.22249
1.80274 2.89134 3.27565 3.37256 3.43407 3.77053 4.20261 4.36275
4.40480 4.70202 4.91278 5.13736 5.14544 5.21297 5.22556 5.40329
5.44554 5.49183 5.63938 5.70411 5.82982 5.87092 5.90340 6.11976
6.15049 6.43761 6.46082 6.49682 6.70070 6.96707 7.11474 7.17713
7.68367 8.14717 8.45954 8.90211 9.49917 10.98482
Molecular weight = 264.10amu
Principal moments of inertia in cm(-1)
A = 0.022037 B = 0.006281 C = 0.006042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.297994 B = 4456.532654 C = 4633.187429
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.189 3.811
3 C -0.257 4.257
4 C 0.187 3.813
5 C -0.103 4.103
6 N -0.514 5.514
7 C 0.297 3.703
8 S 0.057 5.943
9 C -0.069 4.069
10 C 0.003 3.997
11 C -0.486 4.486
12 H 0.081 0.919
13 C 0.085 3.915
14 N -0.890 5.890
15 Si 0.861 3.139
16 H -0.279 1.279
17 H -0.290 1.290
18 H -0.247 1.247
19 C -0.178 4.178
20 C -0.179 4.179
21 N -0.535 5.535
22 H 0.083 0.917
23 H 0.081 0.919
24 H 0.078 0.922
25 H 0.140 0.860
26 H 0.084 0.916
27 H 0.078 0.922
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.075 0.925
31 H 0.265 0.735
32 H 0.088 0.912
33 H 0.075 0.925
34 H 0.070 0.930
35 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.621 14.841 7.579 17.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.039 3.961
3 C -0.285 4.285
4 C 0.037 3.963
5 C -0.160 4.160
6 N -0.233 5.233
7 C -0.076 4.076
8 S 0.298 5.702
9 C -0.218 4.218
10 C 0.000 4.000
11 C -0.523 4.523
12 H 0.099 0.901
13 C -0.118 4.118
14 N -0.526 5.526
15 Si 0.688 3.312
16 H -0.205 1.205
17 H -0.217 1.217
18 H -0.171 1.171
19 C -0.215 4.215
20 C -0.220 4.220
21 N -0.255 5.255
22 H 0.102 0.898
23 H 0.100 0.900
24 H 0.097 0.903
25 H 0.158 0.842
26 H 0.102 0.898
27 H 0.096 0.904
28 H 0.101 0.899
29 H 0.101 0.899
30 H 0.093 0.907
31 H 0.075 0.925
32 H 0.107 0.893
33 H 0.094 0.906
34 H 0.089 0.911
35 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -4.885 13.575 7.356 16.195
hybrid contribution -2.888 1.292 -0.410 3.190
sum -7.773 14.868 6.947 18.158
Atomic orbital electron populations
1.20762 0.88141 1.03759 1.03575 1.21702 0.97314 0.88399 0.88672
1.22302 0.95572 0.99952 1.10636 1.21729 0.91591 0.94022 0.88939
1.20744 1.00144 0.91585 1.03541 1.68423 1.40222 0.97322 1.17303
1.25868 0.89440 0.99563 0.92745 1.86348 1.09821 0.87088 1.86972
1.23539 0.96865 0.96838 1.04540 1.19118 0.99643 0.87731 0.93513
1.20245 0.97354 1.44237 0.90493 0.90082 1.24884 0.97637 0.93797
0.95522 1.69890 1.35784 1.47032 0.99919 0.87091 0.86971 0.78022
0.79084 1.20525 1.21700 1.17095 1.22847 0.98989 1.03902 0.95780
1.23093 0.92966 1.00322 1.05571 1.68782 1.08301 1.30177 1.18213
0.89798 0.90026 0.90287 0.84170 0.89792 0.90360 0.89937 0.89919
0.90674 0.92487 0.89327 0.90649 0.91145 0.89144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.12 10.22 36.01 0.37 -0.75 16
2 C 0.19 2.82 6.82 -82.27 -0.56 2.25 16
3 C -0.26 -3.32 9.53 -39.30 -0.37 -3.70 16
4 C 0.19 2.70 6.82 -82.27 -0.56 2.14 16
5 C -0.10 -0.99 10.22 36.01 0.37 -0.62 16
6 N -0.51 -9.45 10.34 -9.67 -0.10 -9.55 16
7 C 0.30 5.95 7.85 -90.84 -0.71 5.23 16
8 S 0.06 1.22 21.94 -107.50 -2.36 -1.13 16
9 C -0.07 -1.51 4.34 37.16 0.16 -1.35 16
10 C 0.00 0.06 0.79 -155.65 -0.12 -0.06 16
11 C -0.49 -13.34 9.05 -34.44 -0.31 -13.65 16
12 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16
13 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16
14 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16
15 Si 0.86 21.41 24.93 -169.99 -4.24 17.18 16
16 H -0.28 -7.02 7.04 56.52 0.40 -6.62 16
17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
18 H -0.25 -5.74 5.75 56.52 0.32 -5.41 16
19 C -0.18 -3.57 9.96 -26.69 -0.27 -3.84 16
20 C -0.18 -3.72 8.07 -26.69 -0.22 -3.94 16
21 N -0.53 -10.09 9.01 -9.67 -0.09 -10.18 16
22 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
23 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16
24 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16
25 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16
26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
27 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16
28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.08 1.96 5.01 -51.92 -0.26 1.70 16
30 H 0.07 1.52 7.93 -51.92 -0.41 1.11 16
31 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
32 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16
33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
35 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16
LS Contribution 307.88 15.07 4.64 4.64
Total: -1.00 -31.92 307.88 -8.65 -40.57
By element:
Atomic # 1 Polarization: 5.53 SS G_CDS: -4.96 Total: 0.57 kcal
Atomic # 6 Polarization: -13.64 SS G_CDS: -2.33 Total: -15.96 kcal
Atomic # 7 Polarization: -46.45 SS G_CDS: 0.59 Total: -45.86 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -4.24 Total: 17.18 kcal
Atomic # 16 Polarization: 1.22 SS G_CDS: -2.36 Total: -1.13 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -31.92 -8.65 -40.57 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088259733.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.187 kcal
(2) G-P(sol) polarization free energy of solvation -31.919 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds