Wall clock time and date at job start Mon Mar 30 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47083 * 120.00456 * 2 1 3 5 5 O 1.42901 * 109.47107 * 299.99723 * 4 2 1 6 6 C 1.35674 * 117.00062 * 180.02562 * 5 4 2 7 7 C 1.39314 * 119.81783 * 0.24781 * 6 5 4 8 8 C 1.36432 * 120.18227 * 180.26300 * 7 6 5 9 9 C 1.40835 * 119.81560 * 359.47198 * 8 7 6 10 10 C 1.41214 * 120.18162 * 180.30293 * 9 8 7 11 11 H 1.08001 * 119.99977 * 24.53823 * 10 9 8 12 12 C 1.39897 * 119.99713 * 204.53932 * 10 9 8 13 13 N 1.30875 * 120.00270 * 17.91647 * 12 10 9 14 14 Si 1.86801 * 119.99742 * 197.92014 * 12 10 9 15 15 H 1.48492 * 109.47277 * 59.99635 * 14 12 10 16 16 H 1.48504 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46900 * 299.99907 * 14 12 10 18 18 C 1.40833 * 119.64086 * 0.27678 * 9 8 7 19 19 C 1.36441 * 119.81171 * 0.02562 * 18 9 8 20 20 C 1.50701 * 109.46815 * 240.00204 * 2 1 3 21 21 O 1.20825 * 120.00109 * 239.99527 * 20 2 1 22 22 O 1.34234 * 120.00210 * 60.00271 * 20 2 1 23 23 H 1.08997 * 109.47446 * 299.99677 * 1 2 3 24 24 H 1.08994 * 109.47254 * 59.99922 * 1 2 3 25 25 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47262 * 300.00073 * 3 2 1 28 28 H 1.09001 * 109.47105 * 60.00848 * 3 2 1 29 29 H 1.09004 * 109.46943 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47273 * 59.99914 * 4 2 1 31 31 H 1.07997 * 119.90843 * 0.02879 * 7 6 5 32 32 H 1.08000 * 120.09762 * 179.74428 * 8 7 6 33 33 H 0.97001 * 120.00621 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.09911 * 180.02562 * 18 9 8 35 35 H 1.07992 * 119.91021 * 179.97438 * 19 18 9 36 36 H 0.96694 * 117.00019 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9287 -0.5631 3.6168 7 6 2.7371 -1.6965 3.6674 8 6 3.1042 -2.2241 4.8708 9 6 2.6727 -1.6131 6.0641 10 6 3.0533 -2.1489 7.3140 11 1 3.9508 -2.7441 7.3956 12 6 2.2678 -1.9088 8.4464 13 7 1.0303 -1.5050 8.3108 14 14 2.9853 -2.1644 10.1521 15 1 4.1590 -1.2732 10.3340 16 1 1.9570 -1.8446 11.1746 17 1 3.4100 -3.5793 10.3035 18 6 1.8600 -0.4645 6.0042 19 6 1.4967 0.0469 4.7925 20 6 2.0323 -0.7104 -1.2305 21 8 2.7270 -1.6927 -1.1197 22 8 1.7080 -0.2517 -2.4497 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1300 -0.7209 1.2494 30 1 1.6767 -1.7490 1.2491 31 1 3.0711 -2.1610 2.7514 32 1 3.7276 -3.1052 4.9084 33 1 0.4855 -1.3388 9.0960 34 1 1.5252 0.0102 6.9146 35 1 0.8732 0.9274 4.7447 36 1 2.0540 -0.7404 -3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093703302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:57 Heat of formation + Delta-G solvation = -123.453965 kcal Electronic energy + Delta-G solvation = -19491.538605 eV Core-core repulsion = 16326.385855 eV Total energy + Delta-G solvation = -3165.152750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72889 -38.84459 -36.84846 -36.23694 -34.97242 -33.21359 -29.79880 -28.99172 -27.42185 -26.61268 -24.85844 -24.10809 -21.24062 -20.66964 -19.49108 -18.02908 -17.43750 -17.11778 -15.97102 -15.91770 -15.21564 -15.04689 -14.83216 -13.94655 -13.85795 -13.53331 -13.04111 -12.89518 -12.36971 -12.14743 -12.12642 -12.08194 -11.79725 -11.72093 -11.48335 -11.18942 -11.08872 -10.93566 -10.67285 -10.54854 -10.44020 -9.94019 -9.81624 -9.32376 -9.00974 -7.62542 -7.02291 -6.71460 -4.24582 2.05291 2.71176 2.79891 2.97444 3.08618 3.11341 3.23341 3.96022 4.13634 4.61842 4.66148 4.69446 4.84994 5.21008 5.57547 5.64798 5.66940 5.69015 5.77951 5.83526 5.86804 6.13767 6.17315 6.19528 6.25043 6.30904 6.72450 6.99743 7.12921 7.19995 7.46739 7.56868 7.71821 7.81887 8.01433 8.21734 8.44439 8.65567 8.91095 8.99671 10.22968 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.050607 B = 0.003763 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.150192 B = 7438.821687 C = 7735.147797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.137 4.137 4 C 0.088 3.912 5 O -0.322 6.322 6 C -0.009 4.009 7 C -0.166 4.166 8 C -0.198 4.198 9 C 0.089 3.911 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.799 5.799 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.135 4.135 19 C -0.118 4.118 20 C 0.492 3.508 21 O -0.512 6.512 22 O -0.512 6.512 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 4.471 -13.851 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.194 4.194 4 C 0.012 3.988 5 O -0.238 6.238 6 C -0.052 4.052 7 C -0.184 4.184 8 C -0.217 4.217 9 C 0.087 3.913 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.425 5.425 14 Si 0.732 3.268 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.154 4.154 19 C -0.137 4.137 20 C 0.334 3.666 21 O -0.399 6.399 22 O -0.323 6.323 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.297 4.628 -13.364 14.202 hybrid contribution 0.664 -0.863 0.197 1.106 sum -0.633 3.765 -13.167 13.710 Atomic orbital electron populations 1.21817 0.90784 1.03009 1.03855 1.20379 0.98843 0.97201 0.88773 1.21815 1.01307 0.92459 1.03853 1.22125 0.98496 0.95038 0.83162 1.85710 1.72630 1.53599 1.11850 1.18534 1.04956 0.98398 0.83288 1.20461 1.02523 0.97738 0.97714 1.20582 1.07762 1.01359 0.92038 1.17594 0.90916 0.90541 0.92281 1.19444 1.08585 1.29313 0.92079 0.90589 1.25870 0.93954 0.92888 1.01410 1.69822 1.06109 1.34187 1.32367 0.86385 0.79707 0.79810 0.80892 1.18884 1.20393 1.19110 1.20963 1.02121 0.96789 0.95568 1.19804 1.02972 1.00465 0.90436 1.23290 0.76617 0.82046 0.84656 1.90741 1.35775 1.26154 1.87255 1.84517 1.72245 1.58941 1.16629 0.89631 0.91470 0.92210 0.92237 0.91463 0.89652 0.92232 0.92210 0.88670 0.88737 0.90879 0.85677 0.88468 0.73294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.26 37.16 0.31 -1.29 16 2 C -0.05 -0.66 0.79 -155.66 -0.12 -0.78 16 3 C -0.14 -1.57 8.26 37.16 0.31 -1.26 16 4 C 0.09 1.47 2.89 37.16 0.11 1.58 16 5 O -0.32 -6.28 8.77 -18.72 -0.16 -6.44 16 6 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 7 C -0.17 -3.84 8.96 -39.83 -0.36 -4.20 16 8 C -0.20 -4.95 9.74 -39.25 -0.38 -5.33 16 9 C 0.09 2.39 5.57 -106.80 -0.60 1.80 16 10 C -0.46 -12.40 9.04 -37.83 -0.34 -12.75 16 11 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 12 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 13 N -0.80 -20.67 10.96 55.55 0.61 -20.06 16 14 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 18 C -0.14 -3.51 8.64 -39.25 -0.34 -3.85 16 19 C -0.12 -2.81 9.92 -39.83 -0.40 -3.21 16 20 C 0.49 6.19 6.92 36.01 0.25 6.44 16 21 O -0.51 -8.04 16.74 -18.75 -0.31 -8.36 16 22 O -0.51 -4.59 13.23 -39.27 -0.52 -5.11 16 23 H 0.08 1.06 7.68 -51.93 -0.40 0.66 16 24 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 28 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 29 H 0.06 1.03 7.59 -51.93 -0.39 0.63 16 30 H 0.06 1.05 7.62 -51.93 -0.40 0.65 16 31 H 0.10 2.00 6.27 -52.49 -0.33 1.67 16 32 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 34 H 0.13 3.32 6.16 -52.49 -0.32 3.00 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.41 1.87 9.10 45.56 0.41 2.29 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -29.97 308.41 -6.59 -36.56 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.91 Total: 6.56 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -1.91 Total: -21.51 kcal Atomic # 7 Polarization: -20.67 SS G_CDS: 0.61 Total: -20.06 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -1.00 Total: -19.91 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.97 -6.59 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093703302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.890 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds