Wall clock time and date at job start Mon Mar 30 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47083 * 120.00456 * 2 1 3 5 5 O 1.42901 * 109.47107 * 299.99723 * 4 2 1 6 6 C 1.35674 * 117.00062 * 180.02562 * 5 4 2 7 7 C 1.39314 * 119.81783 * 0.24781 * 6 5 4 8 8 C 1.36432 * 120.18227 * 180.26300 * 7 6 5 9 9 C 1.40835 * 119.81560 * 359.47198 * 8 7 6 10 10 C 1.41214 * 120.18162 * 180.30293 * 9 8 7 11 11 H 1.08001 * 119.99977 * 24.53823 * 10 9 8 12 12 C 1.39897 * 119.99713 * 204.53932 * 10 9 8 13 13 N 1.30875 * 120.00270 * 17.91647 * 12 10 9 14 14 Si 1.86801 * 119.99742 * 197.92014 * 12 10 9 15 15 H 1.48492 * 109.47277 * 59.99635 * 14 12 10 16 16 H 1.48504 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46900 * 299.99907 * 14 12 10 18 18 C 1.40833 * 119.64086 * 0.27678 * 9 8 7 19 19 C 1.36441 * 119.81171 * 0.02562 * 18 9 8 20 20 C 1.50701 * 109.46815 * 240.00204 * 2 1 3 21 21 O 1.20825 * 120.00109 * 239.99527 * 20 2 1 22 22 O 1.34234 * 120.00210 * 60.00271 * 20 2 1 23 23 H 1.08997 * 109.47446 * 299.99677 * 1 2 3 24 24 H 1.08994 * 109.47254 * 59.99922 * 1 2 3 25 25 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47262 * 300.00073 * 3 2 1 28 28 H 1.09001 * 109.47105 * 60.00848 * 3 2 1 29 29 H 1.09004 * 109.46943 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47273 * 59.99914 * 4 2 1 31 31 H 1.07997 * 119.90843 * 0.02879 * 7 6 5 32 32 H 1.08000 * 120.09762 * 179.74428 * 8 7 6 33 33 H 0.97001 * 120.00621 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.09911 * 180.02562 * 18 9 8 35 35 H 1.07992 * 119.91021 * 179.97438 * 19 18 9 36 36 H 0.96694 * 117.00019 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9287 -0.5631 3.6168 7 6 2.7371 -1.6965 3.6674 8 6 3.1042 -2.2241 4.8708 9 6 2.6727 -1.6131 6.0641 10 6 3.0533 -2.1489 7.3140 11 1 3.9508 -2.7441 7.3956 12 6 2.2678 -1.9088 8.4464 13 7 1.0303 -1.5050 8.3108 14 14 2.9853 -2.1644 10.1521 15 1 4.1590 -1.2732 10.3340 16 1 1.9570 -1.8446 11.1746 17 1 3.4100 -3.5793 10.3035 18 6 1.8600 -0.4645 6.0042 19 6 1.4967 0.0469 4.7925 20 6 2.0323 -0.7104 -1.2305 21 8 2.7270 -1.6927 -1.1197 22 8 1.7080 -0.2517 -2.4497 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1300 -0.7209 1.2494 30 1 1.6767 -1.7490 1.2491 31 1 3.0711 -2.1610 2.7514 32 1 3.7276 -3.1052 4.9084 33 1 0.4855 -1.3388 9.0960 34 1 1.5252 0.0102 6.9146 35 1 0.8732 0.9274 4.7447 36 1 2.0540 -0.7404 -3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093703302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:57 Heat of formation + Delta-G solvation = -141.072702 kcal Electronic energy + Delta-G solvation = -19492.302611 eV Core-core repulsion = 16326.385855 eV Total energy + Delta-G solvation = -3165.916756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76294 -40.48009 -38.46727 -37.19421 -36.27365 -35.04976 -31.69508 -30.90042 -28.33397 -28.00157 -26.59002 -25.24147 -22.99528 -22.50393 -20.68294 -19.26972 -18.98855 -18.72094 -17.25712 -17.06400 -16.85400 -16.37511 -16.35075 -15.74089 -15.08755 -14.69279 -14.63384 -14.19665 -14.06629 -13.88766 -13.53473 -13.22072 -13.10817 -12.91087 -12.78205 -12.63725 -12.61925 -12.38944 -12.18617 -11.91296 -11.71949 -11.56777 -11.46233 -11.17780 -10.87842 -9.56427 -8.93585 -8.59696 -6.23340 0.95279 1.02179 1.07723 1.40450 1.51039 1.55353 1.71634 2.23555 2.71731 2.78400 3.48192 3.62718 3.70948 3.86645 4.24102 4.29763 4.32603 4.42009 4.46700 4.75730 4.77013 4.82039 4.88965 4.93870 5.06055 5.19969 5.26323 5.27072 5.30832 5.50623 5.55962 5.64979 5.89018 6.04976 6.26449 6.54518 6.76321 6.91361 6.94797 7.07362 8.36825 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.050607 B = 0.003763 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.150192 B = 7438.821687 C = 7735.147797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C -0.134 4.134 4 C 0.084 3.916 5 O -0.316 6.316 6 C 0.001 3.999 7 C -0.168 4.168 8 C -0.212 4.212 9 C 0.057 3.943 10 C -0.502 4.502 11 H 0.074 0.926 12 C 0.036 3.964 13 N -0.828 5.828 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.262 1.262 18 C -0.152 4.152 19 C -0.124 4.124 20 C 0.503 3.497 21 O -0.549 6.549 22 O -0.496 6.496 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.289 0.711 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 5.170 -15.043 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 C -0.191 4.191 4 C 0.008 3.992 5 O -0.231 6.231 6 C -0.043 4.043 7 C -0.187 4.187 8 C -0.232 4.232 9 C 0.055 3.945 10 C -0.531 4.531 11 H 0.092 0.908 12 C -0.178 4.178 13 N -0.455 5.455 14 Si 0.803 3.197 15 H -0.185 1.185 16 H -0.191 1.191 17 H -0.186 1.186 18 C -0.171 4.171 19 C -0.143 4.143 20 C 0.346 3.654 21 O -0.440 6.440 22 O -0.309 6.309 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -1.566 5.339 -14.613 15.636 hybrid contribution 0.700 -1.046 0.342 1.304 sum -0.866 4.294 -14.271 14.928 Atomic orbital electron populations 1.21820 0.89544 1.03070 1.04745 1.20338 0.99778 0.97670 0.87364 1.21819 1.01216 0.91320 1.04756 1.22296 0.98266 0.95143 0.83538 1.85721 1.72335 1.53546 1.11535 1.18609 1.03582 0.97637 0.84466 1.20676 1.02242 0.97857 0.97901 1.20772 1.08210 1.01822 0.92367 1.17938 0.91972 0.91357 0.93197 1.19698 1.09321 1.30883 0.93246 0.90778 1.26712 0.93950 0.92078 1.05102 1.69869 1.07165 1.34558 1.33919 0.85258 0.78995 0.79802 0.75660 1.18530 1.19119 1.18590 1.20926 1.03042 0.97123 0.96037 1.19997 1.03014 1.01090 0.90202 1.23033 0.75722 0.81147 0.85471 1.90743 1.37577 1.27779 1.87891 1.84446 1.71613 1.58684 1.16192 0.90535 0.88800 0.92595 0.92428 0.88835 0.90488 0.92887 0.93164 0.86648 0.88151 0.90087 0.86876 0.86454 0.70667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.26 71.98 0.59 -2.22 16 2 C -0.05 -1.21 0.79 -52.93 -0.04 -1.25 16 3 C -0.13 -2.73 8.26 71.98 0.59 -2.14 16 4 C 0.08 2.71 2.89 71.98 0.21 2.92 16 5 O -0.32 -12.01 8.77 -89.91 -0.79 -12.80 16 6 C 0.00 0.04 6.71 22.79 0.15 0.19 16 7 C -0.17 -7.81 8.96 22.11 0.20 -7.61 16 8 C -0.21 -10.84 9.74 22.48 0.22 -10.62 16 9 C 0.06 3.18 5.57 -21.28 -0.12 3.06 16 10 C -0.50 -27.56 9.04 23.40 0.21 -27.35 16 11 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 12 C 0.04 1.83 5.13 85.24 0.44 2.26 16 13 N -0.83 -43.59 10.96 21.82 0.24 -43.35 16 14 Si 0.98 38.52 29.60 68.60 2.03 40.55 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 C -0.15 -8.10 8.64 22.49 0.19 -7.91 16 19 C -0.12 -5.95 9.92 22.11 0.22 -5.73 16 20 C 0.50 11.49 6.92 71.24 0.49 11.99 16 21 O -0.55 -16.54 16.74 21.97 0.37 -16.17 16 22 O -0.50 -7.14 13.23 -51.45 -0.68 -7.82 16 23 H 0.08 1.75 7.68 -2.39 -0.02 1.74 16 24 H 0.09 1.46 8.11 -2.39 -0.02 1.44 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 28 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 29 H 0.05 1.79 7.59 -2.38 -0.02 1.77 16 30 H 0.05 1.73 7.62 -2.39 -0.02 1.71 16 31 H 0.12 4.81 6.27 -2.91 -0.02 4.79 16 32 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 34 H 0.11 6.21 6.16 -2.91 -0.02 6.20 16 35 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 36 H 0.43 2.40 9.10 -74.06 -0.67 1.73 16 Total: -1.00 -65.17 308.41 4.95 -60.22 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.42 Total: 23.79 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 3.36 Total: -44.41 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.24 Total: -43.35 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.10 Total: -36.80 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -65.17 4.95 -60.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093703302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.852 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds