Wall clock time and date at job start Mon Mar 30 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47398 * 2 1 4 4 C 1.35636 * 117.00356 * 179.97438 * 3 2 1 5 5 C 1.38705 * 120.15336 * 0.02562 * 4 3 2 6 6 C 1.38055 * 120.08902 * 179.97438 * 5 4 3 7 7 C 1.38560 * 120.40307 * 0.02562 * 6 5 4 8 8 C 1.37762 * 120.31004 * 359.97438 * 7 6 5 9 9 C 1.39763 * 119.90065 * 0.02562 * 8 7 6 10 10 C 1.47399 * 120.19795 * 179.97438 * 9 8 7 11 11 O 1.21509 * 120.00608 * 180.02562 * 10 9 8 12 12 O 1.34758 * 119.99855 * 0.02562 * 10 9 8 13 13 C 1.45200 * 117.00026 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47305 * 330.00913 * 13 12 10 15 15 C 1.53004 * 109.46722 * 90.00131 * 13 12 10 16 16 C 1.50698 * 109.47422 * 210.00204 * 13 12 10 17 17 H 1.08002 * 119.99480 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99933 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00565 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99545 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47382 * 60.00147 * 20 18 16 22 22 H 1.48505 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47478 * 300.00019 * 20 18 16 24 24 H 1.09001 * 109.47425 * 300.00092 * 1 2 3 25 25 H 1.09006 * 109.46904 * 59.99966 * 1 2 3 26 26 H 1.08993 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47276 * 240.00182 * 2 1 3 28 28 H 1.09000 * 109.47560 * 120.00245 * 2 1 3 29 29 H 1.07998 * 119.95723 * 359.95212 * 5 4 3 30 30 H 1.08001 * 119.79639 * 179.72275 * 6 5 4 31 31 H 1.08001 * 119.84232 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.04786 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47056 * 179.97438 * 15 13 12 34 34 H 1.08995 * 109.47223 * 300.00243 * 15 13 12 35 35 H 1.09002 * 109.46592 * 60.00345 * 15 13 12 36 36 H 0.96991 * 120.00389 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1989 0.4273 0.0005 6 6 5.5673 0.6097 0.0005 7 6 6.1045 1.8870 0.0011 8 6 5.2777 2.9889 0.0011 9 6 3.8904 2.8191 0.0011 10 6 2.9997 3.9935 0.0017 11 8 1.7941 3.8418 0.0022 12 8 3.5224 5.2355 0.0017 13 6 2.5857 6.3450 0.0018 14 1 1.6712 6.0484 -0.5119 15 6 2.2567 6.7346 1.4443 16 6 3.2016 7.5226 -0.7086 17 1 4.1975 7.4449 -1.1195 18 6 2.4940 8.6992 -0.8341 19 7 1.2816 8.7941 -0.3334 20 14 3.2574 10.1587 -1.7153 21 1 3.5756 9.7804 -3.1157 22 1 2.2993 11.2934 -1.7152 23 1 4.5038 10.5625 -1.0163 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.7880 -0.5715 0.0009 30 1 6.2232 -0.2484 0.0051 31 1 7.1764 2.0192 0.0015 32 1 5.7009 3.9825 0.0012 33 1 1.5539 7.5677 1.4444 34 1 1.8112 5.8828 1.9581 35 1 3.1712 7.0311 1.9580 36 1 0.7840 9.6219 -0.4213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:47 Heat of formation + Delta-G solvation = -104.990604 kcal Electronic energy + Delta-G solvation = -19747.741042 eV Core-core repulsion = 16583.388923 eV Total energy + Delta-G solvation = -3164.352119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35892 -38.85526 -37.36992 -35.44742 -33.18513 -32.01723 -31.21671 -29.61917 -29.25802 -25.26386 -24.25085 -23.91024 -21.58828 -21.35108 -19.67423 -18.23638 -17.06109 -16.54157 -16.14418 -15.85640 -15.34975 -14.79967 -14.71913 -14.53096 -14.05439 -13.38283 -13.30179 -12.89254 -12.63757 -12.17077 -12.05923 -11.90776 -11.73816 -11.49518 -11.15475 -11.03524 -10.97449 -10.79062 -10.77328 -10.31838 -10.22395 -9.47573 -9.40843 -9.00555 -8.82930 -8.43003 -8.20260 -6.12544 -4.19236 0.95831 1.43278 3.18487 3.19459 3.30017 3.33096 3.35632 3.73842 4.04994 4.38173 4.69865 4.84801 4.86166 4.97884 5.10149 5.16147 5.20289 5.28723 5.45403 5.56467 5.76073 5.78763 5.94927 6.05637 6.29098 6.29468 6.46667 6.73336 6.75465 6.97622 7.00507 7.25370 7.45111 7.66283 7.80965 8.02553 8.21823 8.74627 8.98645 9.45932 10.94958 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.005034 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.385704 B = 5560.719113 C = 6397.423761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.279 6.279 4 C 0.185 3.815 5 C -0.229 4.229 6 C -0.055 4.055 7 C -0.176 4.176 8 C -0.023 4.023 9 C -0.150 4.150 10 C 0.494 3.506 11 O -0.500 6.500 12 O -0.356 6.356 13 C 0.217 3.783 14 H 0.046 0.954 15 C -0.154 4.154 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.912 3.088 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.016 0.984 35 H 0.036 0.964 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.619 -17.715 1.290 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.190 6.190 4 C 0.137 3.863 5 C -0.248 4.248 6 C -0.073 4.073 7 C -0.194 4.194 8 C -0.042 4.042 9 C -0.152 4.152 10 C 0.338 3.662 11 O -0.390 6.390 12 O -0.272 6.272 13 C 0.165 3.835 14 H 0.064 0.936 15 C -0.212 4.212 16 C -0.558 4.558 17 H 0.086 0.914 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.739 3.261 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.117 0.883 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.900 -17.420 1.311 18.144 hybrid contribution 0.300 0.532 -0.392 0.726 sum 5.200 -16.888 0.919 17.694 Atomic orbital electron populations 1.21740 0.92551 1.02298 1.04213 1.22863 0.96429 0.82351 1.00980 1.86413 1.17815 1.28274 1.86513 1.19044 0.83144 0.92527 0.91574 1.21140 0.94339 0.97654 1.11643 1.21096 0.94168 0.97476 0.94586 1.21030 1.00176 0.92112 1.06122 1.21472 0.91000 1.00386 0.91309 1.18871 0.93568 0.89524 1.13224 1.20695 0.86883 0.84434 0.74209 1.90806 1.15745 1.87037 1.45393 1.86519 1.43909 1.14484 1.82331 1.20597 0.88367 0.79922 0.94642 0.93594 1.22155 1.01195 1.01175 0.96666 1.20993 1.02660 0.95681 1.36432 0.91384 1.24879 0.94849 0.98626 0.95617 1.69891 1.10654 1.27385 1.44824 0.86339 0.78848 0.80933 0.80017 1.20018 1.21072 1.19957 0.91265 0.91239 0.90671 0.92138 0.92158 0.85034 0.85563 0.85277 0.83493 0.88309 0.96512 0.94503 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.15 0.38 -1.19 16 2 C 0.05 0.56 5.46 37.15 0.20 0.77 16 3 O -0.28 -4.77 8.21 -40.49 -0.33 -5.10 16 4 C 0.18 3.02 6.70 -38.67 -0.26 2.77 16 5 C -0.23 -2.79 9.03 -39.48 -0.36 -3.15 16 6 C -0.06 -0.59 10.03 -39.53 -0.40 -0.99 16 7 C -0.18 -2.08 10.02 -39.64 -0.40 -2.48 16 8 C -0.02 -0.36 9.61 -39.19 -0.38 -0.74 16 9 C -0.15 -2.78 5.88 -104.86 -0.62 -3.40 16 10 C 0.49 11.56 7.86 34.46 0.27 11.83 16 11 O -0.50 -12.98 14.42 -26.60 -0.38 -13.37 16 12 O -0.36 -8.94 9.11 -40.65 -0.37 -9.31 16 13 C 0.22 6.08 2.56 -27.88 -0.07 6.01 16 14 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 15 C -0.15 -4.07 9.33 37.16 0.35 -3.73 16 16 C -0.52 -14.94 8.90 -34.44 -0.31 -15.25 16 17 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.82 11.32 55.43 0.63 -25.19 16 20 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 29 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 2.21 7.61 -52.49 -0.40 1.81 16 33 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -33.09 310.30 -7.19 -40.29 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.72 Total: -0.49 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.67 Total: -7.90 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.63 Total: -25.19 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.09 Total: -27.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.09 -7.19 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.704 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds