Wall clock time and date at job start Mon Mar 30 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47398 * 2 1 4 4 C 1.35636 * 117.00356 * 179.97438 * 3 2 1 5 5 C 1.38705 * 120.15336 * 0.02562 * 4 3 2 6 6 C 1.38055 * 120.08902 * 179.97438 * 5 4 3 7 7 C 1.38560 * 120.40307 * 0.02562 * 6 5 4 8 8 C 1.37762 * 120.31004 * 359.97438 * 7 6 5 9 9 C 1.39763 * 119.90065 * 0.02562 * 8 7 6 10 10 C 1.47399 * 120.19795 * 179.97438 * 9 8 7 11 11 O 1.21509 * 120.00608 * 180.02562 * 10 9 8 12 12 O 1.34758 * 119.99855 * 0.02562 * 10 9 8 13 13 C 1.45200 * 117.00026 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47305 * 330.00913 * 13 12 10 15 15 C 1.53004 * 109.46722 * 90.00131 * 13 12 10 16 16 C 1.50698 * 109.47422 * 210.00204 * 13 12 10 17 17 H 1.08002 * 119.99480 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99933 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00565 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99545 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47382 * 60.00147 * 20 18 16 22 22 H 1.48505 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47478 * 300.00019 * 20 18 16 24 24 H 1.09001 * 109.47425 * 300.00092 * 1 2 3 25 25 H 1.09006 * 109.46904 * 59.99966 * 1 2 3 26 26 H 1.08993 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47276 * 240.00182 * 2 1 3 28 28 H 1.09000 * 109.47560 * 120.00245 * 2 1 3 29 29 H 1.07998 * 119.95723 * 359.95212 * 5 4 3 30 30 H 1.08001 * 119.79639 * 179.72275 * 6 5 4 31 31 H 1.08001 * 119.84232 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.04786 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47056 * 179.97438 * 15 13 12 34 34 H 1.08995 * 109.47223 * 300.00243 * 15 13 12 35 35 H 1.09002 * 109.46592 * 60.00345 * 15 13 12 36 36 H 0.96991 * 120.00389 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1989 0.4273 0.0005 6 6 5.5673 0.6097 0.0005 7 6 6.1045 1.8870 0.0011 8 6 5.2777 2.9889 0.0011 9 6 3.8904 2.8191 0.0011 10 6 2.9997 3.9935 0.0017 11 8 1.7941 3.8418 0.0022 12 8 3.5224 5.2355 0.0017 13 6 2.5857 6.3450 0.0018 14 1 1.6712 6.0484 -0.5119 15 6 2.2567 6.7346 1.4443 16 6 3.2016 7.5226 -0.7086 17 1 4.1975 7.4449 -1.1195 18 6 2.4940 8.6992 -0.8341 19 7 1.2816 8.7941 -0.3334 20 14 3.2574 10.1587 -1.7153 21 1 3.5756 9.7804 -3.1157 22 1 2.2993 11.2934 -1.7152 23 1 4.5038 10.5625 -1.0163 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.7880 -0.5715 0.0009 30 1 6.2232 -0.2484 0.0051 31 1 7.1764 2.0192 0.0015 32 1 5.7009 3.9825 0.0012 33 1 1.5539 7.5677 1.4444 34 1 1.8112 5.8828 1.9581 35 1 3.1712 7.0311 1.9580 36 1 0.7840 9.6219 -0.4213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:47 Heat of formation + Delta-G solvation = -124.565636 kcal Electronic energy + Delta-G solvation = -19748.589879 eV Core-core repulsion = 16583.388923 eV Total energy + Delta-G solvation = -3165.200956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67523 -40.52106 -38.45838 -37.42603 -35.32217 -33.01706 -32.43593 -31.41436 -30.54631 -27.48259 -25.60371 -24.99879 -23.13417 -22.56417 -21.43315 -19.53263 -18.70735 -18.44150 -17.49238 -17.21383 -16.81141 -16.58186 -16.33181 -15.75196 -15.36157 -14.73840 -14.49554 -14.40000 -14.10262 -13.84344 -13.41277 -13.22973 -13.03816 -12.92978 -12.86954 -12.81981 -12.56284 -12.39525 -12.16486 -12.02854 -11.68507 -11.57938 -11.23997 -10.99667 -10.60579 -10.10820 -9.28738 -8.28937 -6.46724 -0.23691 0.39837 1.40993 1.46052 1.53962 1.68729 2.00277 2.19999 2.42352 2.79681 3.01352 3.73703 3.85375 3.97542 4.02926 4.17744 4.23923 4.33752 4.41019 4.48103 4.51564 4.75100 4.77932 4.82922 4.89102 4.91511 5.08917 5.16479 5.25273 5.33248 5.44719 5.47039 5.60022 5.78672 5.89630 6.06788 6.42296 6.59076 7.00099 7.25597 8.79179 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.005034 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.385704 B = 5560.719113 C = 6397.423761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 O -0.322 6.322 4 C 0.170 3.830 5 C -0.220 4.220 6 C -0.031 4.031 7 C -0.166 4.166 8 C -0.034 4.034 9 C -0.196 4.196 10 C 0.486 3.514 11 O -0.541 6.541 12 O -0.360 6.360 13 C 0.219 3.781 14 H 0.001 0.999 15 C -0.140 4.140 16 C -0.549 4.549 17 H 0.069 0.931 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.987 3.013 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.261 1.261 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 -19.898 0.982 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.235 6.235 4 C 0.123 3.877 5 C -0.239 4.239 6 C -0.049 4.049 7 C -0.183 4.183 8 C -0.053 4.053 9 C -0.198 4.198 10 C 0.332 3.668 11 O -0.434 6.434 12 O -0.277 6.277 13 C 0.166 3.834 14 H 0.019 0.981 15 C -0.197 4.197 16 C -0.586 4.586 17 H 0.087 0.913 18 C -0.184 4.184 19 N -0.557 5.557 20 Si 0.810 3.190 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.186 1.186 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.184 0.816 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.660 -19.631 1.013 21.097 hybrid contribution -0.552 1.019 -0.286 1.194 sum 7.108 -18.612 0.727 19.936 Atomic orbital electron populations 1.21805 0.92496 1.04136 1.02353 1.23241 0.96625 0.80483 1.03183 1.86368 1.18736 1.31707 1.86682 1.19332 0.83611 0.92782 0.92020 1.21566 0.94646 0.97704 1.09949 1.21729 0.94048 0.98537 0.90538 1.21446 1.01494 0.91379 1.04028 1.21519 0.89986 1.01614 0.92134 1.18829 0.94236 0.88338 1.18400 1.21743 0.87480 0.84811 0.72718 1.90759 1.17648 1.87320 1.47641 1.86508 1.43126 1.15121 1.82932 1.20328 0.87337 0.80917 0.94862 0.98073 1.21968 1.01168 1.00505 0.96099 1.21260 1.03076 0.96532 1.37772 0.91279 1.25895 0.95147 1.01496 0.95909 1.70022 1.11930 1.28408 1.45291 0.85174 0.78355 0.76743 0.78753 1.19325 1.20096 1.18556 0.93069 0.93173 0.86876 0.89804 0.89704 0.81478 0.80436 0.81633 0.84486 0.89885 0.96357 0.93395 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 10.28 71.98 0.74 -2.39 16 2 C 0.04 0.83 5.46 71.98 0.39 1.23 16 3 O -0.32 -11.31 8.21 -68.58 -0.56 -11.87 16 4 C 0.17 5.51 6.70 22.86 0.15 5.66 16 5 C -0.22 -4.54 9.03 22.34 0.20 -4.34 16 6 C -0.03 -0.49 10.03 22.30 0.22 -0.27 16 7 C -0.17 -3.28 10.02 22.23 0.22 -3.06 16 8 C -0.03 -1.03 9.61 22.53 0.22 -0.82 16 9 C -0.20 -7.54 5.88 -20.02 -0.12 -7.65 16 10 C 0.49 24.42 7.86 70.23 0.55 24.97 16 11 O -0.54 -30.57 14.42 26.81 0.39 -30.18 16 12 O -0.36 -19.33 9.11 -56.69 -0.52 -19.85 16 13 C 0.22 13.04 2.56 29.85 0.08 13.11 16 14 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 15 C -0.14 -7.78 9.33 71.98 0.67 -7.11 16 16 C -0.55 -32.74 8.90 25.60 0.23 -32.52 16 17 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 18 C 0.02 0.86 5.30 84.65 0.45 1.31 16 19 N -0.92 -54.86 11.32 21.44 0.24 -54.62 16 20 Si 0.99 44.08 29.54 68.60 2.03 46.11 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.19 16 26 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.38 7.66 -2.38 -0.02 1.36 16 28 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 29 H 0.17 2.20 6.30 -2.91 -0.02 2.18 16 30 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 4.25 7.61 -2.91 -0.02 4.23 16 33 H 0.08 4.87 6.07 -2.39 -0.01 4.85 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.64 310.30 6.66 -71.98 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.07 Total: 10.30 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.01 Total: -11.86 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.24 Total: -54.62 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -0.69 Total: -61.91 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.64 6.66 -71.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.590 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds