Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.46991 * 2 1 4 4 C 1.35632 * 116.99649 * 179.97438 * 3 2 1 5 5 C 1.38703 * 120.15920 * 0.02562 * 4 3 2 6 6 C 1.38055 * 120.09257 * 179.97438 * 5 4 3 7 7 C 1.38560 * 120.40298 * 0.02562 * 6 5 4 8 8 C 1.37773 * 120.30682 * 359.97438 * 7 6 5 9 9 C 1.39763 * 119.90239 * 0.02562 * 8 7 6 10 10 C 1.47401 * 120.19770 * 179.97438 * 9 8 7 11 11 O 1.21504 * 119.99856 * 180.02562 * 10 9 8 12 12 O 1.34750 * 119.99537 * 0.02562 * 10 9 8 13 13 C 1.45199 * 116.99690 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47297 * 30.00032 * 13 12 10 15 15 C 1.53000 * 109.47220 * 269.99812 * 13 12 10 16 16 C 1.50702 * 109.47364 * 149.99969 * 13 12 10 17 17 H 1.08002 * 119.99798 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00250 * 180.02562 * 16 13 12 19 19 N 1.31507 * 119.99602 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99743 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47276 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46976 * 119.99784 * 20 18 16 23 23 H 1.48499 * 109.46994 * 239.99371 * 20 18 16 24 24 H 1.09001 * 109.46831 * 299.99565 * 1 2 3 25 25 H 1.09002 * 109.47385 * 59.99680 * 1 2 3 26 26 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46831 * 240.00435 * 2 1 3 28 28 H 1.08999 * 109.46883 * 120.00379 * 2 1 3 29 29 H 1.08005 * 119.95383 * 0.24872 * 5 4 3 30 30 H 1.08000 * 119.79868 * 179.97438 * 6 5 4 31 31 H 1.07992 * 119.84419 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.04584 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.46633 * 60.00150 * 15 13 12 34 34 H 1.08999 * 109.47200 * 179.97438 * 15 13 12 35 35 H 1.08996 * 109.47431 * 300.00284 * 15 13 12 36 36 H 0.97009 * 119.99549 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1989 0.4273 0.0005 6 6 5.5674 0.6097 0.0005 7 6 6.1045 1.8870 0.0011 8 6 5.2776 2.9890 0.0011 9 6 3.8904 2.8191 0.0011 10 6 2.9996 3.9935 0.0017 11 8 1.7941 3.8417 0.0022 12 8 3.5223 5.2355 0.0017 13 6 2.5856 6.3449 0.0018 14 1 1.6711 6.0483 0.5156 15 6 2.2566 6.7347 -1.4407 16 6 3.2016 7.5226 0.7122 17 1 4.1974 7.4449 1.1230 18 6 2.4935 8.6989 0.8387 19 7 1.2808 8.7933 0.3388 20 14 3.2569 10.1583 1.7199 21 1 4.6195 9.7972 2.1870 22 1 3.3422 11.3106 0.7870 23 1 2.4157 10.5274 2.8867 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7880 -0.5715 -0.0040 30 1 6.2232 -0.2483 0.0009 31 1 7.1763 2.0192 0.0015 32 1 5.7008 3.9826 0.0012 33 1 1.8110 5.8828 -1.9546 34 1 1.5530 7.5672 -1.4407 35 1 3.1709 7.0312 -1.9546 36 1 0.7828 9.6211 0.4275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = -124.699369 kcal Electronic energy + Delta-G solvation = -19748.787640 eV Core-core repulsion = 16583.580885 eV Total energy + Delta-G solvation = -3165.206755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.67591 -40.52213 -38.45788 -37.42768 -35.32459 -33.01679 -32.43606 -31.41623 -30.54590 -27.48665 -25.60421 -24.99897 -23.13558 -22.56443 -21.43389 -19.53318 -18.71128 -18.44359 -17.49828 -17.21402 -16.81156 -16.58236 -16.32959 -15.75080 -15.35967 -14.74396 -14.49577 -14.40094 -14.10303 -13.85268 -13.41228 -13.23362 -13.04566 -12.92800 -12.87608 -12.81936 -12.56442 -12.40519 -12.14104 -12.02799 -11.68534 -11.58191 -11.23986 -10.98294 -10.61805 -10.10822 -9.28706 -8.29650 -6.47057 -0.23681 0.39824 1.40964 1.42721 1.56621 1.68735 2.00392 2.20038 2.42021 2.79668 3.00891 3.73685 3.85368 3.97512 4.02988 4.17742 4.23924 4.33782 4.40995 4.48063 4.51483 4.74978 4.77823 4.82864 4.89130 4.91495 5.08896 5.16464 5.25270 5.33262 5.44774 5.47130 5.59910 5.78669 5.89478 6.06518 6.42298 6.59279 7.00100 7.25383 8.78970 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.005034 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.305392 B = 5560.670728 C = 6397.581195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 O -0.322 6.322 4 C 0.170 3.830 5 C -0.220 4.220 6 C -0.031 4.031 7 C -0.166 4.166 8 C -0.034 4.034 9 C -0.196 4.196 10 C 0.486 3.514 11 O -0.541 6.541 12 O -0.360 6.360 13 C 0.218 3.782 14 H 0.002 0.998 15 C -0.140 4.140 16 C -0.547 4.547 17 H 0.069 0.931 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.276 1.276 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -19.914 -0.994 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.235 6.235 4 C 0.123 3.877 5 C -0.239 4.239 6 C -0.048 4.048 7 C -0.183 4.183 8 C -0.053 4.053 9 C -0.198 4.198 10 C 0.333 3.667 11 O -0.434 6.434 12 O -0.277 6.277 13 C 0.165 3.835 14 H 0.019 0.981 15 C -0.197 4.197 16 C -0.584 4.584 17 H 0.087 0.913 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.810 3.190 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.201 1.201 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.184 0.816 32 H 0.155 0.845 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.665 -19.651 -1.022 21.118 hybrid contribution -0.570 1.029 0.279 1.209 sum 7.094 -18.622 -0.743 19.941 Atomic orbital electron populations 1.21808 0.92497 1.04135 1.02352 1.23242 0.96625 0.80483 1.03184 1.86369 1.18734 1.31704 1.86680 1.19332 0.83613 0.92779 0.92020 1.21566 0.94643 0.97706 1.09948 1.21728 0.94048 0.98534 0.90538 1.21447 1.01489 0.91380 1.04030 1.21521 0.89992 1.01610 0.92136 1.18830 0.94233 0.88343 1.18398 1.21739 0.87479 0.84810 0.72719 1.90758 1.17651 1.87315 1.47640 1.86508 1.43121 1.15122 1.82930 1.20339 0.87350 0.80937 0.94878 0.98053 1.21966 1.01170 1.00503 0.96092 1.21321 1.03018 0.96511 1.37594 0.91301 1.25901 0.95152 1.01516 0.95932 1.70043 1.11927 1.28327 1.45391 0.85067 0.78627 0.77318 0.77957 1.18553 1.19436 1.20100 0.93176 0.93068 0.86877 0.89702 0.89801 0.81475 0.80435 0.81639 0.84497 0.96357 0.89906 0.93363 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.04 0.83 5.46 71.98 0.39 1.23 16 3 O -0.32 -11.30 8.21 -68.53 -0.56 -11.87 16 4 C 0.17 5.51 6.70 22.86 0.15 5.66 16 5 C -0.22 -4.54 9.03 22.34 0.20 -4.34 16 6 C -0.03 -0.49 10.03 22.30 0.22 -0.27 16 7 C -0.17 -3.29 10.02 22.24 0.22 -3.06 16 8 C -0.03 -1.04 9.61 22.53 0.22 -0.82 16 9 C -0.20 -7.54 5.89 -20.02 -0.12 -7.65 16 10 C 0.49 24.42 7.86 70.24 0.55 24.97 16 11 O -0.54 -30.56 14.42 26.82 0.39 -30.17 16 12 O -0.36 -19.33 9.11 -56.61 -0.52 -19.85 16 13 C 0.22 13.00 2.56 29.85 0.08 13.07 16 14 H 0.00 0.11 7.16 -2.38 -0.02 0.09 16 15 C -0.14 -7.77 9.33 71.98 0.67 -7.10 16 16 C -0.55 -32.64 8.90 25.60 0.23 -32.41 16 17 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 18 C 0.01 0.82 5.30 84.66 0.45 1.27 16 19 N -0.92 -54.85 11.32 21.45 0.24 -54.61 16 20 Si 0.99 44.14 29.54 68.60 2.03 46.16 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 28 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 29 H 0.17 2.20 6.30 -2.91 -0.02 2.18 16 30 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.14 4.25 7.61 -2.91 -0.02 4.23 16 33 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 4.86 6.07 -2.39 -0.01 4.84 16 35 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -78.72 310.31 6.66 -72.05 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.07 Total: 10.11 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.01 Total: -11.83 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.24 Total: -54.61 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -0.69 Total: -61.89 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.72 6.66 -72.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.645 kcal (2) G-P(sol) polarization free energy of solvation -78.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds