Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99796 * 2 1 4 4 C 1.50697 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.84977 * 269.72225 * 4 3 2 6 6 C 1.37941 * 120.15358 * 180.27124 * 5 4 3 7 7 C 1.39627 * 119.84779 * 0.02562 * 6 5 4 8 8 C 1.47730 * 120.15314 * 180.02562 * 7 6 5 9 9 O 1.21468 * 120.00294 * 179.97438 * 8 7 6 10 10 O 1.34714 * 119.99457 * 359.97206 * 8 7 6 11 11 C 1.45195 * 116.99599 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47502 * 329.99716 * 11 10 8 13 13 C 1.52999 * 109.47300 * 90.00034 * 11 10 8 14 14 C 1.50699 * 109.47027 * 209.99977 * 11 10 8 15 15 H 1.07995 * 119.99976 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99981 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99732 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99703 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47329 * 60.00572 * 18 16 14 20 20 H 1.48511 * 109.46870 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47212 * 300.00117 * 18 16 14 22 22 C 1.39634 * 119.69990 * 359.97438 * 7 6 5 23 23 C 1.37938 * 119.84795 * 0.02562 * 22 7 6 24 24 H 1.09008 * 109.46787 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47400 * 299.99964 * 1 2 3 26 26 H 1.08991 * 109.47390 * 60.00472 * 1 2 3 27 27 H 1.08994 * 109.47448 * 59.99600 * 3 2 1 28 28 H 1.09000 * 109.46818 * 299.99561 * 3 2 1 29 29 H 1.08004 * 119.92137 * 0.27709 * 5 4 3 30 30 H 1.08002 * 120.07623 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47306 * 299.99876 * 13 11 10 32 32 H 1.08996 * 109.47486 * 59.99980 * 13 11 10 33 33 H 1.09004 * 109.47503 * 180.02562 * 13 11 10 34 34 H 0.97008 * 119.99299 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.07342 * 179.97438 * 22 7 6 36 36 H 1.07999 * 119.92823 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.1999 1.1378 1.1992 6 6 5.5755 1.0347 1.2059 7 6 6.2741 0.9799 -0.0018 8 6 7.7472 0.8688 -0.0025 9 8 8.3523 0.8210 -1.0547 10 8 8.4195 0.8207 1.1639 11 6 9.8654 0.7121 1.0873 12 1 10.1419 0.1742 0.1804 13 6 10.4812 2.1123 1.0576 14 6 10.3774 -0.0364 2.2909 15 1 9.6853 -0.3950 3.0384 16 6 11.7293 -0.2644 2.4373 17 7 12.5720 0.1719 1.5267 18 14 12.3639 -1.1915 3.9296 19 1 11.7658 -2.5504 3.9594 20 1 13.8428 -1.3028 3.8512 21 1 11.9880 -0.4580 5.1648 22 6 5.5741 1.0296 -1.2089 23 6 4.1986 1.1328 -1.2011 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.6583 1.1806 2.1326 30 1 6.1108 0.9971 2.1431 31 1 10.1109 2.6537 0.1870 32 1 10.2048 2.6501 1.9645 33 1 11.5666 2.0308 0.9996 34 1 13.5232 0.0111 1.6295 35 1 6.1084 0.9882 -2.1466 36 1 3.6558 1.1718 -2.1340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = -113.009440 kcal Electronic energy + Delta-G solvation = -19039.957595 eV Core-core repulsion = 15875.257753 eV Total energy + Delta-G solvation = -3164.699842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97238 -38.87683 -37.60871 -35.65516 -33.28147 -32.23772 -30.99518 -29.57015 -27.72525 -25.89336 -25.30298 -23.07402 -22.57481 -21.15155 -19.71099 -17.60321 -16.68909 -16.66585 -16.35770 -16.04804 -15.62399 -14.98182 -14.77768 -14.49442 -14.38375 -13.70280 -13.45649 -12.86319 -12.73438 -12.55783 -12.14973 -11.95771 -11.70360 -11.39316 -11.20312 -11.07512 -11.01100 -10.83814 -10.38594 -10.27588 -10.00890 -9.72389 -9.53771 -8.96005 -8.91755 -8.87375 -8.48059 -6.17587 -4.24614 0.79853 1.40943 2.94790 3.27471 3.30540 3.32791 3.60858 3.66495 4.07507 4.34252 4.63224 4.66536 4.94095 4.98747 5.00344 5.08772 5.13520 5.15390 5.35661 5.41751 5.47641 5.65712 5.85898 6.02510 6.31108 6.43701 6.51336 6.65467 6.81048 6.87393 6.90389 6.92150 7.15436 7.59568 7.72827 7.92893 8.13998 8.62013 8.87676 9.40618 10.89898 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.003686 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.232736 B = 7594.527757 C = 8114.999204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.101 3.899 4 C -0.073 4.073 5 C -0.113 4.113 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.494 3.506 9 O -0.516 6.516 10 O -0.350 6.350 11 C 0.216 3.784 12 H 0.047 0.953 13 C -0.155 4.155 14 C -0.522 4.522 15 H 0.069 0.931 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.064 4.064 23 C -0.113 4.113 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.267 0.733 35 H 0.138 0.862 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 3.236 -2.245 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.025 3.975 4 C -0.073 4.073 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.105 4.105 8 C 0.338 3.662 9 O -0.408 6.408 10 O -0.266 6.266 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.213 4.213 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.740 3.260 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.082 4.082 23 C -0.131 4.131 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.162 0.838 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.392 3.061 -2.560 20.779 hybrid contribution 0.328 -0.211 0.624 0.736 sum -20.064 2.850 -1.936 20.358 Atomic orbital electron populations 1.22766 0.80986 1.02921 0.99961 1.88005 1.19586 1.27285 1.95397 1.21391 0.89824 0.85203 1.01070 1.19758 0.93960 0.99885 0.93742 1.21015 0.93978 1.00525 0.97582 1.21582 0.93879 0.94459 0.98346 1.19525 0.91014 1.05339 0.94632 1.21041 0.88201 0.73539 0.83386 1.90760 1.70281 1.46547 1.33191 1.86534 1.27179 1.81306 1.31608 1.20666 0.68938 0.94774 0.99280 0.93481 1.22167 1.04864 0.96557 0.97673 1.20987 0.92368 1.36002 1.06619 0.91304 1.24892 0.96191 0.95751 0.97146 1.69896 1.03205 1.45405 1.34201 0.86315 0.77514 0.80133 0.82055 1.19955 1.21036 1.19928 1.21284 0.93730 0.95423 0.97787 1.20925 0.93659 1.00912 0.97607 0.89500 0.93993 0.94043 0.92164 0.92243 0.85311 0.83823 0.96485 0.94379 0.88186 0.92328 0.84387 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.09 10.69 -35.23 -0.38 -4.46 16 3 C 0.10 0.93 6.06 36.00 0.22 1.15 16 4 C -0.07 -0.86 5.52 -104.53 -0.58 -1.44 16 5 C -0.11 -1.40 9.68 -39.64 -0.38 -1.78 16 6 C -0.06 -0.97 9.62 -39.17 -0.38 -1.35 16 7 C -0.10 -1.81 5.87 -104.98 -0.62 -2.43 16 8 C 0.49 10.97 7.87 34.61 0.27 11.24 16 9 O -0.52 -12.69 15.61 -19.24 -0.30 -12.99 16 10 O -0.35 -8.55 9.12 -40.53 -0.37 -8.92 16 11 C 0.22 5.90 2.56 -27.88 -0.07 5.83 16 12 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 13 C -0.15 -3.99 9.33 37.16 0.35 -3.65 16 14 C -0.52 -14.80 8.90 -34.44 -0.31 -15.11 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 18 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.06 -0.96 9.60 -39.17 -0.38 -1.33 16 23 C -0.11 -1.38 9.68 -39.64 -0.38 -1.76 16 24 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.14 2.15 7.61 -52.49 -0.40 1.75 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.14 2.01 7.65 -52.49 -0.40 1.61 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -31.95 316.18 -6.74 -38.69 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.83 Total: -0.76 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.24 Total: -7.67 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.63 Total: -24.86 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.05 Total: -26.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.95 -6.74 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.315 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds