Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99796 * 2 1 4 4 C 1.50697 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.84977 * 269.72225 * 4 3 2 6 6 C 1.37941 * 120.15358 * 180.27124 * 5 4 3 7 7 C 1.39627 * 119.84779 * 0.02562 * 6 5 4 8 8 C 1.47730 * 120.15314 * 180.02562 * 7 6 5 9 9 O 1.21468 * 120.00294 * 179.97438 * 8 7 6 10 10 O 1.34714 * 119.99457 * 359.97206 * 8 7 6 11 11 C 1.45195 * 116.99599 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47502 * 329.99716 * 11 10 8 13 13 C 1.52999 * 109.47300 * 90.00034 * 11 10 8 14 14 C 1.50699 * 109.47027 * 209.99977 * 11 10 8 15 15 H 1.07995 * 119.99976 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99981 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99732 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99703 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47329 * 60.00572 * 18 16 14 20 20 H 1.48511 * 109.46870 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47212 * 300.00117 * 18 16 14 22 22 C 1.39634 * 119.69990 * 359.97438 * 7 6 5 23 23 C 1.37938 * 119.84795 * 0.02562 * 22 7 6 24 24 H 1.09008 * 109.46787 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47400 * 299.99964 * 1 2 3 26 26 H 1.08991 * 109.47390 * 60.00472 * 1 2 3 27 27 H 1.08994 * 109.47448 * 59.99600 * 3 2 1 28 28 H 1.09000 * 109.46818 * 299.99561 * 3 2 1 29 29 H 1.08004 * 119.92137 * 0.27709 * 5 4 3 30 30 H 1.08002 * 120.07623 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47306 * 299.99876 * 13 11 10 32 32 H 1.08996 * 109.47486 * 59.99980 * 13 11 10 33 33 H 1.09004 * 109.47503 * 180.02562 * 13 11 10 34 34 H 0.97008 * 119.99299 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.07342 * 179.97438 * 22 7 6 36 36 H 1.07999 * 119.92823 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.1999 1.1378 1.1992 6 6 5.5755 1.0347 1.2059 7 6 6.2741 0.9799 -0.0018 8 6 7.7472 0.8688 -0.0025 9 8 8.3523 0.8210 -1.0547 10 8 8.4195 0.8207 1.1639 11 6 9.8654 0.7121 1.0873 12 1 10.1419 0.1742 0.1804 13 6 10.4812 2.1123 1.0576 14 6 10.3774 -0.0364 2.2909 15 1 9.6853 -0.3950 3.0384 16 6 11.7293 -0.2644 2.4373 17 7 12.5720 0.1719 1.5267 18 14 12.3639 -1.1915 3.9296 19 1 11.7658 -2.5504 3.9594 20 1 13.8428 -1.3028 3.8512 21 1 11.9880 -0.4580 5.1648 22 6 5.5741 1.0296 -1.2089 23 6 4.1986 1.1328 -1.2011 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.6583 1.1806 2.1326 30 1 6.1108 0.9971 2.1431 31 1 10.1109 2.6537 0.1870 32 1 10.2048 2.6501 1.9645 33 1 11.5666 2.0308 0.9996 34 1 13.5232 0.0111 1.6295 35 1 6.1084 0.9882 -2.1466 36 1 3.6558 1.1718 -2.1340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -131.946429 kcal Electronic energy + Delta-G solvation = -19040.778764 eV Core-core repulsion = 15875.257753 eV Total energy + Delta-G solvation = -3165.521011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51558 -40.13663 -38.45280 -37.55630 -35.36752 -33.36499 -32.10244 -31.59700 -28.57161 -27.48476 -26.65846 -24.49919 -23.66519 -22.76466 -21.36663 -19.26994 -18.56113 -17.85719 -17.30991 -17.01917 -16.91130 -16.77556 -16.47025 -15.58597 -15.52367 -15.05897 -14.49330 -14.42164 -14.31595 -13.95126 -13.60366 -13.20733 -13.11391 -13.01882 -12.83092 -12.55195 -12.41765 -12.18824 -12.17146 -12.07848 -11.63752 -11.49011 -11.03544 -10.61914 -10.60953 -10.02821 -10.01537 -8.30399 -6.47935 -0.41936 0.34617 1.41071 1.45673 1.50031 1.53772 1.92155 2.40230 2.59562 3.00224 3.15802 3.68880 3.79468 3.92801 3.96952 4.22677 4.30786 4.47023 4.48582 4.57158 4.62335 4.66691 4.74629 4.75354 4.79518 4.93611 5.00138 5.06674 5.23403 5.33953 5.45401 5.45759 5.58525 5.81191 5.86145 6.01960 6.23890 6.56237 6.87520 7.23432 8.77489 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.003686 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.232736 B = 7594.527757 C = 8114.999204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.100 3.900 4 C -0.062 4.062 5 C -0.107 4.107 6 C -0.070 4.070 7 C -0.136 4.136 8 C 0.489 3.511 9 O -0.552 6.552 10 O -0.355 6.355 11 C 0.217 3.783 12 H 0.006 0.994 13 C -0.142 4.142 14 C -0.551 4.551 15 H 0.069 0.931 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.986 3.014 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.070 4.070 23 C -0.105 4.105 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.138 0.862 31 H 0.022 0.978 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.272 0.728 35 H 0.133 0.867 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.651 3.329 -1.156 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.024 3.976 4 C -0.062 4.062 5 C -0.125 4.125 6 C -0.088 4.088 7 C -0.137 4.137 8 C 0.336 3.664 9 O -0.445 6.445 10 O -0.271 6.271 11 C 0.164 3.836 12 H 0.024 0.976 13 C -0.200 4.200 14 C -0.588 4.588 15 H 0.087 0.913 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.809 3.191 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.088 4.088 23 C -0.123 4.123 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.128 3.166 -1.476 23.390 hybrid contribution 0.997 -0.229 0.206 1.044 sum -22.131 2.937 -1.270 22.361 Atomic orbital electron populations 1.22950 0.79083 1.03771 1.01295 1.87948 1.21690 1.27975 1.95711 1.21499 0.87486 0.85257 1.03314 1.20212 0.95951 0.96970 0.93092 1.21326 0.92630 0.99093 0.99408 1.21603 0.95249 0.94870 0.97114 1.19373 0.87833 1.09671 0.96856 1.21977 0.90171 0.72101 0.82165 1.90721 1.71457 1.48429 1.33938 1.86520 1.25674 1.81896 1.33017 1.20404 0.70803 0.95005 0.97401 0.97590 1.21989 1.03590 0.96007 0.98368 1.21266 0.93213 1.37299 1.07048 0.91278 1.25877 0.96029 0.96217 1.00283 1.70019 1.03661 1.45887 1.35937 0.85188 0.77067 0.78726 0.78149 1.19339 1.20126 1.18636 1.21359 0.95075 0.95741 0.96608 1.21260 0.92270 0.99322 0.99452 0.89039 0.92680 0.92651 0.90042 0.90011 0.82281 0.84456 0.95919 0.93336 0.89838 0.91893 0.84935 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.31 10.69 -148.98 -1.59 -8.91 16 3 C 0.10 1.40 6.06 71.24 0.43 1.83 16 4 C -0.06 -1.25 5.52 -19.80 -0.11 -1.36 16 5 C -0.11 -2.37 9.68 22.23 0.22 -2.16 16 6 C -0.07 -2.09 9.62 22.53 0.22 -1.87 16 7 C -0.14 -4.87 5.87 -20.10 -0.12 -4.99 16 8 C 0.49 22.90 7.87 70.33 0.55 23.45 16 9 O -0.55 -28.88 15.61 19.94 0.31 -28.57 16 10 O -0.35 -18.18 9.12 -56.24 -0.51 -18.69 16 11 C 0.22 12.46 2.56 29.85 0.08 12.53 16 12 H 0.01 0.40 7.16 -2.39 -0.02 0.39 16 13 C -0.14 -7.59 9.33 71.98 0.67 -6.92 16 14 C -0.55 -32.11 8.90 25.60 0.23 -31.88 16 15 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 16 C 0.02 0.88 5.30 84.66 0.45 1.33 16 17 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 18 Si 0.99 43.42 29.54 68.60 2.03 45.45 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 22 C -0.07 -2.06 9.60 22.54 0.22 -1.85 16 23 C -0.11 -2.30 9.68 22.23 0.22 -2.09 16 24 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 25 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 28 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.14 4.17 7.61 -2.91 -0.02 4.15 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.08 4.74 6.07 -2.39 -0.01 4.72 16 34 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 35 H 0.13 3.98 7.65 -2.91 -0.02 3.96 16 36 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.75 316.18 5.84 -65.91 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.07 Total: 10.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.29 Total: -12.47 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.24 Total: -53.43 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.79 Total: -56.17 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.75 5.84 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.038 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds