Wall clock time and date at job start Mon Mar 30 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.47110 * 2 1 4 4 C 1.50702 * 109.47068 * 240.00211 * 2 1 3 5 5 H 1.08001 * 119.99827 * 275.13808 * 4 2 1 6 6 C 1.37877 * 119.99735 * 95.14762 * 4 2 1 7 7 N 1.31520 * 119.99583 * 179.23620 * 6 4 2 8 8 Si 1.86800 * 120.00372 * 359.23335 * 6 4 2 9 9 H 1.48494 * 109.47247 * 85.40379 * 8 6 4 10 10 H 1.48498 * 109.46922 * 205.40862 * 8 6 4 11 11 H 1.48506 * 109.46838 * 325.40270 * 8 6 4 12 12 O 1.45199 * 109.47471 * 119.99857 * 2 1 3 13 13 C 1.34227 * 117.00073 * 269.99950 * 12 2 1 14 14 O 1.20830 * 120.00387 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00083 * 179.97438 * 13 12 2 16 16 H 1.09006 * 109.46794 * 305.00179 * 15 13 12 17 17 C 1.52996 * 109.47053 * 65.00329 * 15 13 12 18 18 O 1.42904 * 109.47382 * 185.00770 * 15 13 12 19 19 C 1.35900 * 117.00203 * 155.75535 * 18 15 13 20 20 C 1.38724 * 120.05412 * 4.29669 * 19 18 15 21 21 C 1.38151 * 119.93906 * 179.74380 * 20 19 18 22 22 C 1.38266 * 120.05758 * 0.51497 * 21 20 19 23 23 C 1.38262 * 120.10917 * 359.76260 * 22 21 20 24 24 C 1.38148 * 120.05875 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46771 * 176.66435 * 1 2 3 26 26 H 1.08992 * 109.47563 * 56.66208 * 1 2 3 27 27 H 1.08997 * 109.47252 * 296.65382 * 1 2 3 28 28 H 0.97002 * 120.00022 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47043 * 180.02562 * 17 15 13 30 30 H 1.09005 * 109.47291 * 299.99705 * 17 15 13 31 31 H 1.08992 * 109.47303 * 60.00196 * 17 15 13 32 32 H 1.07998 * 120.03403 * 359.97438 * 20 19 18 33 33 H 1.08004 * 119.97133 * 180.23161 * 21 20 19 34 34 H 1.07992 * 119.94476 * 179.74131 * 22 21 20 35 35 H 1.08000 * 119.96974 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.02877 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1333 -1.7856 -1.2298 6 6 2.3630 0.0125 -2.3570 7 7 2.8156 -0.6061 -3.4258 8 14 2.1683 1.8703 -2.3653 9 1 3.3845 2.4981 -1.7894 10 1 1.9811 2.3421 -3.7609 11 1 0.9841 2.2475 -1.5523 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9974 1.2518 2.2506 15 6 2.7184 -0.5771 3.5494 16 1 2.0555 -1.3961 3.8290 17 6 4.1312 -1.1189 3.3232 18 8 2.7428 0.3946 4.5970 19 6 2.6698 -0.0706 5.8718 20 6 2.6665 -1.4366 6.1139 21 6 2.5976 -1.9068 7.4111 22 6 2.5212 -1.0173 8.4670 23 6 2.5185 0.3445 8.2279 24 6 2.5928 0.8198 6.9329 25 1 -0.3633 -1.0260 -0.0598 26 1 -0.3634 0.5647 -0.8585 27 1 -0.3633 0.4610 0.9184 28 1 3.0480 -0.0976 -4.2185 29 1 4.4935 -1.5830 4.2405 30 1 4.1125 -1.8601 2.5242 31 1 4.7939 -0.3000 3.0437 32 1 2.7215 -2.1318 5.2893 33 1 2.5988 -2.9701 7.6003 34 1 2.4632 -1.3870 9.4800 35 1 2.4584 1.0372 9.0543 36 1 2.5902 1.8837 6.7467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:05 Heat of formation + Delta-G solvation = -100.145022 kcal Electronic energy + Delta-G solvation = -19598.867520 eV Core-core repulsion = 16434.725521 eV Total energy + Delta-G solvation = -3164.141999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62664 -39.47988 -37.55416 -35.79337 -33.23854 -32.29017 -31.00013 -30.46411 -29.72093 -25.50240 -24.96304 -23.14580 -22.51575 -21.14769 -19.68408 -18.49776 -17.60924 -16.58333 -16.44641 -16.03592 -15.79463 -15.22064 -14.73755 -14.53208 -14.27187 -13.61392 -13.35306 -13.08914 -12.75555 -12.59792 -12.47779 -12.26637 -11.90866 -11.72956 -11.71396 -11.23918 -11.13475 -11.03011 -10.87926 -10.66695 -10.04027 -9.77059 -9.53628 -9.20920 -9.16407 -8.78770 -8.33401 -6.33248 -4.37863 1.17001 1.28968 2.55756 2.71830 3.18979 3.26255 3.31817 3.63591 3.76734 4.21870 4.60597 4.72127 4.78316 4.89259 4.95704 4.99323 5.20519 5.22881 5.34107 5.47626 5.64731 5.69294 5.84774 6.09751 6.11597 6.17586 6.24057 6.35992 6.36385 6.43646 6.59499 6.62973 7.07888 7.25988 7.29250 7.43593 8.15727 8.52676 8.76184 9.25419 10.77702 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040960 B = 0.004182 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.426031 B = 6693.742370 C = 6894.900566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.183 3.817 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.879 5.879 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.342 6.342 13 C 0.455 3.545 14 O -0.504 6.504 15 C 0.091 3.909 16 H 0.106 0.894 17 C -0.173 4.173 18 O -0.289 6.289 19 C 0.136 3.864 20 C -0.213 4.213 21 C -0.079 4.079 22 C -0.164 4.164 23 C -0.082 4.082 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.271 0.729 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -1.670 20.244 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.557 4.557 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.516 5.516 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.184 1.184 12 O -0.258 6.258 13 C 0.297 3.703 14 O -0.392 6.392 15 C 0.033 3.967 16 H 0.124 0.876 17 C -0.231 4.231 18 O -0.202 6.202 19 C 0.090 3.910 20 C -0.231 4.231 21 C -0.098 4.098 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.170 4.170 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.193 -1.097 19.879 19.910 hybrid contribution -0.096 0.870 -0.227 0.904 sum 0.097 -0.227 19.652 19.654 Atomic orbital electron populations 1.22270 0.97396 1.01657 0.99977 1.21017 0.91480 0.94170 0.80238 0.93498 1.20781 1.45490 0.96339 0.93043 0.89525 1.24907 0.93243 0.98645 0.95382 1.69854 1.41526 1.36525 1.03654 0.86971 0.80151 0.85536 0.77840 1.19507 1.20589 1.18417 1.86654 1.75668 1.43277 1.20205 1.22805 0.75486 0.86201 0.85855 1.90624 1.47596 1.16638 1.84343 1.21761 0.99837 0.90559 0.84499 0.87626 1.22301 0.93888 1.02939 1.03934 1.86185 1.87575 1.34728 1.11709 1.19106 0.95285 0.92491 0.84116 1.21396 1.08753 0.94349 0.98652 1.20957 0.97152 0.99778 0.91869 1.21053 1.04698 0.93364 0.99073 1.20960 0.97644 0.95678 0.95681 1.20494 1.06080 0.99788 0.90654 0.92285 0.91690 0.95093 0.91880 0.90796 0.88775 0.90707 0.84922 0.85741 0.86030 0.85433 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.50 37.15 0.35 -3.09 16 2 C 0.18 4.58 2.15 -27.89 -0.06 4.52 16 3 H 0.05 1.23 4.55 -51.92 -0.24 1.00 16 4 C -0.52 -14.53 9.25 -34.44 -0.32 -14.85 16 5 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 7 N -0.88 -25.84 13.96 55.43 0.77 -25.06 16 8 Si 0.87 21.31 26.57 -169.99 -4.52 16.80 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 12 O -0.34 -7.74 9.86 -39.25 -0.39 -8.13 16 13 C 0.46 9.42 7.26 36.01 0.26 9.69 16 14 O -0.50 -11.96 15.73 -25.47 -0.40 -12.36 16 15 C 0.09 1.42 2.75 -27.88 -0.08 1.34 16 16 H 0.11 1.38 6.30 -51.93 -0.33 1.05 16 17 C -0.17 -2.30 9.14 37.16 0.34 -1.96 16 18 O -0.29 -4.70 9.34 -39.33 -0.37 -5.07 16 19 C 0.14 1.83 6.59 -39.22 -0.26 1.57 16 20 C -0.21 -2.41 8.23 -39.43 -0.32 -2.74 16 21 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 22 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 23 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.06 1.41 7.38 -51.93 -0.38 1.03 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.07 0.79 6.91 -51.93 -0.36 0.43 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.13 1.33 5.44 -52.49 -0.29 1.05 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -31.95 308.40 -6.58 -38.53 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.56 Total: 0.33 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.77 Total: -9.69 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.77 Total: -25.06 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.15 Total: -25.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.52 Total: 16.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.95 -6.58 -38.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.615 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds