Wall clock time and date at job start Mon Mar 30 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.47110 * 2 1 4 4 C 1.50702 * 109.47068 * 240.00211 * 2 1 3 5 5 H 1.08001 * 119.99827 * 275.13808 * 4 2 1 6 6 C 1.37877 * 119.99735 * 95.14762 * 4 2 1 7 7 N 1.31520 * 119.99583 * 179.23620 * 6 4 2 8 8 Si 1.86800 * 120.00372 * 359.23335 * 6 4 2 9 9 H 1.48494 * 109.47247 * 85.40379 * 8 6 4 10 10 H 1.48498 * 109.46922 * 205.40862 * 8 6 4 11 11 H 1.48506 * 109.46838 * 325.40270 * 8 6 4 12 12 O 1.45199 * 109.47471 * 119.99857 * 2 1 3 13 13 C 1.34227 * 117.00073 * 269.99950 * 12 2 1 14 14 O 1.20830 * 120.00387 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00083 * 179.97438 * 13 12 2 16 16 H 1.09006 * 109.46794 * 305.00179 * 15 13 12 17 17 C 1.52996 * 109.47053 * 65.00329 * 15 13 12 18 18 O 1.42904 * 109.47382 * 185.00770 * 15 13 12 19 19 C 1.35900 * 117.00203 * 155.75535 * 18 15 13 20 20 C 1.38724 * 120.05412 * 4.29669 * 19 18 15 21 21 C 1.38151 * 119.93906 * 179.74380 * 20 19 18 22 22 C 1.38266 * 120.05758 * 0.51497 * 21 20 19 23 23 C 1.38262 * 120.10917 * 359.76260 * 22 21 20 24 24 C 1.38148 * 120.05875 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46771 * 176.66435 * 1 2 3 26 26 H 1.08992 * 109.47563 * 56.66208 * 1 2 3 27 27 H 1.08997 * 109.47252 * 296.65382 * 1 2 3 28 28 H 0.97002 * 120.00022 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47043 * 180.02562 * 17 15 13 30 30 H 1.09005 * 109.47291 * 299.99705 * 17 15 13 31 31 H 1.08992 * 109.47303 * 60.00196 * 17 15 13 32 32 H 1.07998 * 120.03403 * 359.97438 * 20 19 18 33 33 H 1.08004 * 119.97133 * 180.23161 * 21 20 19 34 34 H 1.07992 * 119.94476 * 179.74131 * 22 21 20 35 35 H 1.08000 * 119.96974 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.02877 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1333 -1.7856 -1.2298 6 6 2.3630 0.0125 -2.3570 7 7 2.8156 -0.6061 -3.4258 8 14 2.1683 1.8703 -2.3653 9 1 3.3845 2.4981 -1.7894 10 1 1.9811 2.3421 -3.7609 11 1 0.9841 2.2475 -1.5523 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9974 1.2518 2.2506 15 6 2.7184 -0.5771 3.5494 16 1 2.0555 -1.3961 3.8290 17 6 4.1312 -1.1189 3.3232 18 8 2.7428 0.3946 4.5970 19 6 2.6698 -0.0706 5.8718 20 6 2.6665 -1.4366 6.1139 21 6 2.5976 -1.9068 7.4111 22 6 2.5212 -1.0173 8.4670 23 6 2.5185 0.3445 8.2279 24 6 2.5928 0.8198 6.9329 25 1 -0.3633 -1.0260 -0.0598 26 1 -0.3634 0.5647 -0.8585 27 1 -0.3633 0.4610 0.9184 28 1 3.0480 -0.0976 -4.2185 29 1 4.4935 -1.5830 4.2405 30 1 4.1125 -1.8601 2.5242 31 1 4.7939 -0.3000 3.0437 32 1 2.7215 -2.1318 5.2893 33 1 2.5988 -2.9701 7.6003 34 1 2.4632 -1.3870 9.4800 35 1 2.4584 1.0372 9.0543 36 1 2.5902 1.8837 6.7467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:05 Heat of formation + Delta-G solvation = -118.539408 kcal Electronic energy + Delta-G solvation = -19599.665161 eV Core-core repulsion = 16434.725521 eV Total energy + Delta-G solvation = -3164.939639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91887 -40.86844 -38.58347 -37.55152 -35.26463 -33.58833 -32.42298 -31.68772 -30.60243 -27.50422 -26.30340 -24.22319 -23.49517 -22.58974 -21.34708 -19.57155 -19.43723 -18.32628 -18.00102 -17.26149 -16.86632 -16.58947 -16.15935 -15.97094 -15.27336 -14.96501 -14.56867 -14.53218 -14.41228 -14.10738 -13.80221 -13.57470 -13.32091 -13.16915 -12.97580 -12.87162 -12.55982 -12.44980 -12.17395 -11.98217 -11.77731 -11.56591 -11.33969 -11.23278 -10.91738 -9.94215 -9.22090 -8.50029 -6.60036 0.39579 0.46427 1.07062 1.17109 1.27610 1.29385 1.37327 2.17165 2.45324 2.84689 2.87738 3.50883 3.66640 3.74390 3.93166 4.00539 4.15787 4.29874 4.38858 4.52245 4.52575 4.53776 4.60995 4.63744 4.74397 4.83027 5.05762 5.10239 5.26698 5.32215 5.35653 5.48909 5.52175 5.61005 5.83085 6.09063 6.33213 6.49139 6.76220 7.07498 8.64802 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040960 B = 0.004182 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.426031 B = 6693.742370 C = 6894.900566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.039 3.961 7 N -0.919 5.919 8 Si 0.923 3.077 9 H -0.272 1.272 10 H -0.265 1.265 11 H -0.250 1.250 12 O -0.347 6.347 13 C 0.451 3.549 14 O -0.538 6.538 15 C 0.101 3.899 16 H 0.134 0.866 17 C -0.167 4.167 18 O -0.316 6.316 19 C 0.102 3.898 20 C -0.219 4.219 21 C -0.081 4.081 22 C -0.158 4.158 23 C -0.081 4.081 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.277 0.723 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -1.950 22.832 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.052 0.948 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.163 4.163 7 N -0.557 5.557 8 Si 0.746 3.254 9 H -0.198 1.198 10 H -0.189 1.189 11 H -0.173 1.173 12 O -0.263 6.263 13 C 0.294 3.706 14 O -0.428 6.428 15 C 0.044 3.956 16 H 0.151 0.849 17 C -0.224 4.224 18 O -0.231 6.231 19 C 0.058 3.942 20 C -0.237 4.237 21 C -0.099 4.099 22 C -0.176 4.176 23 C -0.099 4.099 24 C -0.189 4.189 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.159 -1.393 22.489 22.533 hybrid contribution 0.030 0.880 -0.846 1.221 sum -0.129 -0.513 21.643 21.650 Atomic orbital electron populations 1.22183 0.95169 1.02562 1.00836 1.20851 0.93097 0.92950 0.80140 0.94802 1.20887 1.45881 0.95089 0.94865 0.92765 1.25608 0.92890 1.02918 0.94899 1.69946 1.42871 1.38397 1.04452 0.86106 0.80272 0.80261 0.78725 1.19751 1.18908 1.17329 1.86599 1.75993 1.43242 1.20486 1.23833 0.74269 0.85896 0.86572 1.90597 1.49094 1.18206 1.84891 1.21772 1.01311 0.90386 0.82166 0.84870 1.22303 0.92201 1.02436 1.05499 1.86127 1.88515 1.35522 1.12905 1.19406 0.97846 0.93923 0.83028 1.21578 1.08668 0.93449 1.00029 1.21355 0.95938 1.01456 0.91136 1.21494 1.02646 0.92962 1.00519 1.21306 0.96516 0.96804 0.95269 1.20705 1.06997 0.99659 0.91589 0.91344 0.91392 0.93665 0.91349 0.87706 0.88699 0.92086 0.83924 0.82941 0.83004 0.82844 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 9.50 71.98 0.68 -5.84 16 2 C 0.18 9.18 2.15 29.85 0.06 9.24 16 3 H 0.03 1.79 4.55 -2.38 -0.01 1.78 16 4 C -0.53 -30.29 9.25 25.60 0.24 -30.05 16 5 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 6 C 0.04 2.20 5.47 84.65 0.46 2.66 16 7 N -0.92 -54.94 13.96 21.45 0.30 -54.64 16 8 Si 0.92 43.95 26.57 68.60 1.82 45.77 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 12 O -0.35 -15.81 9.86 -51.39 -0.51 -16.32 16 13 C 0.45 18.69 7.26 71.24 0.52 19.21 16 14 O -0.54 -25.79 15.73 28.37 0.45 -25.35 16 15 C 0.10 3.07 2.75 29.85 0.08 3.15 16 16 H 0.13 3.26 6.30 -2.38 -0.02 3.24 16 17 C -0.17 -4.27 9.14 71.98 0.66 -3.61 16 18 O -0.32 -10.23 9.34 -73.39 -0.69 -10.92 16 19 C 0.10 2.66 6.59 22.50 0.15 2.80 16 20 C -0.22 -4.44 8.23 22.37 0.18 -4.25 16 21 C -0.08 -1.26 10.04 22.26 0.22 -1.03 16 22 C -0.16 -2.26 10.04 22.28 0.22 -2.04 16 23 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 24 C -0.17 -3.94 9.99 22.37 0.22 -3.71 16 25 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 26 H 0.07 2.88 7.38 -2.39 -0.02 2.86 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.10 2.01 6.91 -2.39 -0.02 2.00 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.14 2.47 5.44 -2.91 -0.02 2.46 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.46 308.40 6.33 -64.13 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.02 Total: 11.92 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 3.93 Total: -14.59 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.30 Total: -54.64 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.75 Total: -52.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.82 Total: 45.77 kcal Total: -70.46 6.33 -64.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.412 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds