Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47264 * 2 1 4 4 C 1.50698 * 109.46626 * 120.00203 * 2 1 3 5 5 H 1.07994 * 120.00101 * 119.99993 * 4 2 1 6 6 C 1.37879 * 120.00084 * 299.99521 * 4 2 1 7 7 N 1.31520 * 119.99796 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00277 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47146 * 60.00312 * 8 6 4 10 10 H 1.48506 * 109.47455 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47467 * 300.00289 * 8 6 4 12 12 O 1.45198 * 109.47124 * 239.99736 * 2 1 3 13 13 C 1.34227 * 117.00079 * 90.00178 * 12 2 1 14 14 O 1.20825 * 119.99897 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00260 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.47125 * 60.00229 * 15 13 12 17 17 C 1.53005 * 109.46979 * 300.00258 * 15 13 12 18 18 O 1.42901 * 109.46961 * 180.02562 * 15 13 12 19 19 C 1.35903 * 116.99894 * 204.83476 * 18 15 13 20 20 C 1.38739 * 120.05397 * 354.62359 * 19 18 15 21 21 C 1.38139 * 119.94216 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05584 * 0.02562 * 21 20 19 23 23 C 1.38262 * 120.11373 * 0.26692 * 22 21 20 24 24 C 1.38151 * 120.05132 * 359.45624 * 23 22 21 25 25 H 1.09003 * 109.47047 * 60.00298 * 1 2 3 26 26 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47247 * 300.00090 * 1 2 3 28 28 H 0.97000 * 120.00034 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47048 * 59.99829 * 17 15 13 30 30 H 1.08995 * 109.46790 * 179.97438 * 17 15 13 31 31 H 1.09003 * 109.46862 * 299.99668 * 17 15 13 32 32 H 1.08004 * 120.02702 * 359.97438 * 20 19 18 33 33 H 1.08002 * 119.97075 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.94012 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.97058 * 179.70445 * 23 22 21 36 36 H 1.08006 * 120.02211 * 180.27856 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0079 10 1 1.8267 -0.4199 5.2205 11 1 1.8278 -2.5198 4.0082 12 8 2.0141 -0.6845 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7194 -0.5772 -3.5491 16 1 2.0106 -1.3373 -3.8773 17 6 4.0797 -1.2271 -3.2879 18 8 2.8550 0.4187 -4.5650 19 6 2.7856 -0.0026 -5.8552 20 6 2.7032 -1.3580 -6.1400 21 6 2.6323 -1.7836 -7.4523 22 6 2.6439 -0.8603 -8.4814 23 6 2.7321 0.4906 -8.2004 24 6 2.7974 0.9217 -6.8895 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7081 1.1610 3.4844 29 1 3.9767 -1.9865 -2.5130 30 1 4.4427 -1.6911 -4.2049 31 1 4.7886 -0.4668 -2.9597 32 1 2.6945 -2.0796 -5.3365 33 1 2.5685 -2.8386 -7.6746 34 1 2.5888 -1.1952 -9.5067 35 1 2.7458 1.2095 -9.0062 36 1 2.8618 1.9773 -6.6704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -101.069289 kcal Electronic energy + Delta-G solvation = -19507.783903 eV Core-core repulsion = 16343.601825 eV Total energy + Delta-G solvation = -3164.182078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56937 -39.36555 -37.50137 -35.66323 -33.38194 -32.24416 -30.91829 -29.79143 -29.44051 -25.39675 -24.90359 -23.11120 -22.48894 -21.22656 -19.62569 -18.46361 -17.23359 -16.56652 -16.22212 -15.85338 -15.69359 -15.11318 -14.68770 -14.50368 -14.34684 -13.60764 -13.35088 -13.06781 -12.75767 -12.36418 -12.14783 -12.04681 -11.69610 -11.66596 -11.31580 -11.10227 -11.05873 -10.89195 -10.84246 -10.43699 -10.31502 -9.66499 -9.56391 -9.13677 -8.97339 -8.52991 -8.30189 -6.21916 -4.29615 1.19730 1.31802 2.63387 2.84887 3.24229 3.28094 3.30875 3.66545 3.84567 4.29494 4.64336 4.74927 4.81594 4.93204 5.00948 5.10937 5.23116 5.26080 5.38864 5.50700 5.70349 5.72768 5.87554 6.12909 6.20460 6.26675 6.38627 6.58112 6.63945 6.83939 6.85448 7.07772 7.32371 7.54467 7.67190 7.87732 8.07961 8.54613 8.81121 9.35778 10.85508 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.046470 B = 0.003801 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.392185 B = 7363.774826 C = 7609.604025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.350 6.350 13 C 0.456 3.544 14 O -0.498 6.498 15 C 0.092 3.908 16 H 0.105 0.895 17 C -0.172 4.172 18 O -0.288 6.288 19 C 0.136 3.864 20 C -0.213 4.213 21 C -0.080 4.080 22 C -0.164 4.164 23 C -0.082 4.082 24 C -0.151 4.151 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.268 0.732 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -5.175 -17.921 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.267 6.267 13 C 0.297 3.703 14 O -0.386 6.386 15 C 0.034 3.966 16 H 0.123 0.877 17 C -0.229 4.229 18 O -0.201 6.201 19 C 0.090 3.910 20 C -0.232 4.232 21 C -0.098 4.098 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.170 4.170 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.590 -4.493 -17.607 18.522 hybrid contribution 0.127 -0.463 0.872 0.996 sum 3.717 -4.956 -16.735 17.844 Atomic orbital electron populations 1.22184 0.97425 1.00224 1.01559 1.20718 0.91475 0.94058 0.77294 0.93399 1.20967 1.32788 1.13594 0.88743 0.91241 1.24897 0.94886 0.95089 0.99087 1.69891 1.35842 1.22479 1.24399 0.86300 0.79226 0.79501 0.80910 1.19936 1.21002 1.19905 1.86458 1.75945 1.43424 1.20868 1.22637 0.75808 0.86108 0.85787 1.90639 1.47184 1.16545 1.84229 1.21734 0.99845 0.89689 0.85325 0.87706 1.22294 0.94890 1.02115 1.03640 1.86186 1.86595 1.35506 1.11810 1.19111 0.95251 0.92742 0.83846 1.21393 1.08763 0.94656 0.98362 1.20945 0.97249 0.99673 0.91931 1.21050 1.04745 0.93256 0.99174 1.20961 0.97621 0.95950 0.95426 1.20502 1.06090 0.99568 0.90813 0.96470 0.94305 0.88066 0.92249 0.88935 0.90936 0.90718 0.84975 0.85786 0.86054 0.85430 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 9.33 37.16 0.35 -3.62 16 2 C 0.22 5.81 2.56 -27.88 -0.07 5.74 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.53 8.90 -34.44 -0.31 -14.83 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 8 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 O -0.35 -8.22 9.77 -39.25 -0.38 -8.60 16 13 C 0.46 9.79 7.31 36.01 0.26 10.05 16 14 O -0.50 -12.42 15.72 -25.48 -0.40 -12.82 16 15 C 0.09 1.47 2.75 -27.88 -0.08 1.39 16 16 H 0.11 1.42 6.32 -51.93 -0.33 1.09 16 17 C -0.17 -2.28 9.10 37.16 0.34 -1.94 16 18 O -0.29 -4.81 9.33 -39.39 -0.37 -5.18 16 19 C 0.14 1.89 6.60 -39.22 -0.26 1.63 16 20 C -0.21 -2.47 8.24 -39.43 -0.32 -2.80 16 21 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 22 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 23 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 24 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 30 H 0.07 0.77 6.90 -51.93 -0.36 0.41 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.13 1.36 5.43 -52.48 -0.28 1.07 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -31.49 309.94 -7.23 -38.72 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.58 Total: 1.21 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.77 Total: -9.31 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.54 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.15 Total: -26.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.49 -7.23 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.348 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds