Wall clock time and date at job start Mon Mar 30 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47264 * 2 1 4 4 C 1.50698 * 109.46626 * 120.00203 * 2 1 3 5 5 H 1.07994 * 120.00101 * 119.99993 * 4 2 1 6 6 C 1.37879 * 120.00084 * 299.99521 * 4 2 1 7 7 N 1.31520 * 119.99796 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00277 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47146 * 60.00312 * 8 6 4 10 10 H 1.48506 * 109.47455 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47467 * 300.00289 * 8 6 4 12 12 O 1.45198 * 109.47124 * 239.99736 * 2 1 3 13 13 C 1.34227 * 117.00079 * 90.00178 * 12 2 1 14 14 O 1.20825 * 119.99897 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00260 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.47125 * 60.00229 * 15 13 12 17 17 C 1.53005 * 109.46979 * 300.00258 * 15 13 12 18 18 O 1.42901 * 109.46961 * 180.02562 * 15 13 12 19 19 C 1.35903 * 116.99894 * 204.83476 * 18 15 13 20 20 C 1.38739 * 120.05397 * 354.62359 * 19 18 15 21 21 C 1.38139 * 119.94216 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05584 * 0.02562 * 21 20 19 23 23 C 1.38262 * 120.11373 * 0.26692 * 22 21 20 24 24 C 1.38151 * 120.05132 * 359.45624 * 23 22 21 25 25 H 1.09003 * 109.47047 * 60.00298 * 1 2 3 26 26 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47247 * 300.00090 * 1 2 3 28 28 H 0.97000 * 120.00034 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47048 * 59.99829 * 17 15 13 30 30 H 1.08995 * 109.46790 * 179.97438 * 17 15 13 31 31 H 1.09003 * 109.46862 * 299.99668 * 17 15 13 32 32 H 1.08004 * 120.02702 * 359.97438 * 20 19 18 33 33 H 1.08002 * 119.97075 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.94012 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.97058 * 179.70445 * 23 22 21 36 36 H 1.08006 * 120.02211 * 180.27856 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0079 10 1 1.8267 -0.4199 5.2205 11 1 1.8278 -2.5198 4.0082 12 8 2.0141 -0.6845 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7194 -0.5772 -3.5491 16 1 2.0106 -1.3373 -3.8773 17 6 4.0797 -1.2271 -3.2879 18 8 2.8550 0.4187 -4.5650 19 6 2.7856 -0.0026 -5.8552 20 6 2.7032 -1.3580 -6.1400 21 6 2.6323 -1.7836 -7.4523 22 6 2.6439 -0.8603 -8.4814 23 6 2.7321 0.4906 -8.2004 24 6 2.7974 0.9217 -6.8895 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7081 1.1610 3.4844 29 1 3.9767 -1.9865 -2.5130 30 1 4.4427 -1.6911 -4.2049 31 1 4.7886 -0.4668 -2.9597 32 1 2.6945 -2.0796 -5.3365 33 1 2.5685 -2.8386 -7.6746 34 1 2.5888 -1.1952 -9.5067 35 1 2.7458 1.2095 -9.0062 36 1 2.8618 1.9773 -6.6704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:06 Heat of formation + Delta-G solvation = -118.419284 kcal Electronic energy + Delta-G solvation = -19508.536255 eV Core-core repulsion = 16343.601825 eV Total energy + Delta-G solvation = -3164.934430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.89017 -40.83592 -38.56758 -37.52644 -35.41392 -33.47730 -31.86161 -31.46347 -30.59018 -27.50154 -26.26801 -24.26104 -23.52305 -22.72699 -21.31873 -19.52432 -19.01542 -18.35861 -17.73506 -17.19879 -16.87517 -16.63223 -16.15496 -15.98223 -15.31995 -14.95337 -14.47587 -14.39163 -14.20210 -13.88649 -13.68575 -13.30021 -13.22146 -13.09857 -12.84737 -12.82842 -12.44614 -12.42112 -12.19332 -12.15749 -11.77867 -11.66791 -11.30688 -11.05238 -10.61883 -9.94196 -9.22122 -8.30451 -6.48260 0.39606 0.46354 1.10282 1.27171 1.44123 1.46666 1.55760 2.33119 2.54216 2.84874 3.00536 3.51687 3.68319 3.77175 3.93488 4.00516 4.29942 4.39381 4.46226 4.52600 4.60761 4.64532 4.73023 4.75447 4.77547 5.05132 5.08992 5.10568 5.35925 5.44805 5.48803 5.56540 5.60848 5.82588 5.85866 5.99381 6.33555 6.56166 6.82386 7.23055 8.77357 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.046470 B = 0.003801 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.392185 B = 7363.774826 C = 7609.604025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.261 1.261 12 O -0.349 6.349 13 C 0.449 3.551 14 O -0.541 6.541 15 C 0.103 3.897 16 H 0.134 0.866 17 C -0.165 4.165 18 O -0.318 6.318 19 C 0.101 3.899 20 C -0.218 4.218 21 C -0.080 4.080 22 C -0.158 4.158 23 C -0.081 4.081 24 C -0.172 4.172 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -7.650 -19.428 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.186 1.186 12 O -0.265 6.265 13 C 0.292 3.708 14 O -0.431 6.431 15 C 0.046 3.954 16 H 0.151 0.849 17 C -0.222 4.222 18 O -0.233 6.233 19 C 0.057 3.943 20 C -0.237 4.237 21 C -0.098 4.098 22 C -0.176 4.176 23 C -0.099 4.099 24 C -0.191 4.191 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.164 -6.982 -19.151 20.805 hybrid contribution -0.061 0.361 1.158 1.215 sum 4.104 -6.621 -17.993 19.606 Atomic orbital electron populations 1.22016 0.96617 1.00728 1.00836 1.20445 0.92145 0.92168 0.78827 0.97632 1.21266 1.33674 1.14109 0.89558 0.90825 1.25885 0.94652 0.95644 1.02284 1.70022 1.36508 1.23712 1.25397 0.85180 0.78807 0.78648 0.76463 1.19214 1.20412 1.18556 1.86442 1.76085 1.43125 1.20850 1.23879 0.74386 0.85804 0.86693 1.90612 1.49027 1.18575 1.84919 1.21776 1.01704 0.89311 0.82628 0.84911 1.22299 0.92847 1.01623 1.05399 1.86130 1.87536 1.36429 1.13192 1.19427 0.97921 0.94320 0.82638 1.21586 1.08586 0.93669 0.99817 1.21359 0.95916 1.01430 0.91112 1.21502 1.02605 0.92749 1.00734 1.21305 0.96505 0.97223 0.94855 1.20711 1.07151 0.99325 0.91889 0.96046 0.93005 0.89879 0.91929 0.88367 0.87698 0.92111 0.83823 0.82795 0.82915 0.82850 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.53 9.33 71.98 0.67 -6.86 16 2 C 0.22 12.07 2.56 29.85 0.08 12.15 16 3 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 4 C -0.55 -30.92 8.90 25.60 0.23 -30.69 16 5 H 0.07 3.98 7.81 -2.91 -0.02 3.96 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 O -0.35 -16.74 9.77 -51.39 -0.50 -17.24 16 13 C 0.45 19.90 7.31 71.24 0.52 20.42 16 14 O -0.54 -28.47 15.72 28.40 0.45 -28.02 16 15 C 0.10 3.27 2.75 29.85 0.08 3.35 16 16 H 0.13 3.42 6.32 -2.39 -0.02 3.40 16 17 C -0.16 -4.18 9.10 71.98 0.66 -3.52 16 18 O -0.32 -10.85 9.33 -73.38 -0.68 -11.53 16 19 C 0.10 2.75 6.60 22.51 0.15 2.90 16 20 C -0.22 -4.56 8.24 22.37 0.18 -4.38 16 21 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 22 C -0.16 -2.34 10.04 22.28 0.22 -2.12 16 23 C -0.08 -1.42 10.04 22.25 0.22 -1.19 16 24 C -0.17 -4.18 9.99 22.36 0.22 -3.96 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 4.64 6.07 -2.39 -0.01 4.63 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.10 2.38 8.11 -2.39 -0.02 2.36 16 30 H 0.10 1.98 6.90 -2.39 -0.02 1.97 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.14 2.54 5.43 -2.91 -0.02 2.52 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -70.84 309.94 6.51 -64.32 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.08 Total: 14.47 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 3.91 Total: -13.68 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.24 Total: -52.76 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -0.74 Total: -56.79 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.84 6.51 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.095 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds