Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00306 * 2 1 4 4 C 1.38752 * 120.05204 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94680 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 7 7 C 1.38244 * 120.11199 * 0.55704 * 6 5 4 8 8 C 1.38171 * 120.05436 * 359.44067 * 7 6 5 9 9 C 1.50698 * 120.02521 * 180.25752 * 8 7 6 10 10 C 1.50703 * 109.47035 * 264.99879 * 9 8 7 11 11 O 1.20822 * 119.99888 * 0.02562 * 10 9 8 12 12 O 1.34229 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.45196 * 117.00130 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.47061 * 330.00062 * 13 12 10 15 15 C 1.52999 * 109.47292 * 89.99836 * 13 12 10 16 16 C 1.50706 * 109.47358 * 210.00234 * 13 12 10 17 17 H 1.08003 * 119.99710 * 359.97438 * 16 13 12 18 18 C 1.37868 * 119.99984 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00439 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00043 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.46893 * 59.99971 * 20 18 16 22 22 H 1.48494 * 109.47419 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46900 * 300.00333 * 20 18 16 24 24 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47042 * 299.99603 * 1 2 3 26 26 H 1.08996 * 109.47358 * 60.00240 * 1 2 3 27 27 H 1.08007 * 120.02913 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.97734 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.94303 * 180.29349 * 6 5 4 30 30 H 1.08002 * 119.97539 * 179.72689 * 7 6 5 31 31 H 1.08997 * 109.47634 * 25.00518 * 9 8 7 32 32 H 1.09005 * 109.47160 * 145.00516 * 9 8 7 33 33 H 1.09001 * 109.47202 * 60.00455 * 15 13 12 34 34 H 1.09006 * 109.47186 * 180.02562 * 15 13 12 35 35 H 1.08994 * 109.47239 * 300.00357 * 15 13 12 36 36 H 0.97002 * 120.00558 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 0.0047 7 6 4.0560 2.5171 -0.0006 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 0.0000 10 6 4.4237 -0.4668 -1.4153 11 8 3.9280 0.1474 -2.3302 12 8 5.1256 -1.5845 -1.6595 13 6 5.2487 -1.9958 -3.0466 14 1 4.3665 -1.6746 -3.6004 15 6 6.4963 -1.3564 -3.6594 16 6 5.3671 -3.4966 -3.1170 17 1 5.3519 -4.0826 -2.2099 18 6 5.4950 -4.1214 -4.3393 19 7 5.5140 -3.4078 -5.4438 20 14 5.6425 -5.9815 -4.4265 21 1 4.4322 -6.6025 -3.8310 22 1 5.7682 -6.4022 -5.8451 23 1 6.8450 -6.4186 -3.6726 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0014 28 1 1.3340 4.5113 -0.0019 29 1 3.7922 4.6380 0.0091 30 1 5.1344 2.5751 -0.0005 31 1 5.2326 0.2261 0.4340 32 1 3.7469 -0.7417 0.5898 33 1 7.3785 -1.6776 -3.1056 34 1 6.5884 -1.6649 -4.7008 35 1 6.4106 -0.2711 -3.6085 36 1 5.6043 -3.8473 -6.3038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = -105.872749 kcal Electronic energy + Delta-G solvation = -19748.335089 eV Core-core repulsion = 16583.944717 eV Total energy + Delta-G solvation = -3164.390372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34394 -39.14332 -37.34816 -35.60218 -33.20914 -32.79282 -30.11269 -29.61295 -27.91217 -26.99699 -25.26050 -22.56176 -22.09769 -21.05346 -19.44538 -17.95939 -16.84655 -16.57827 -16.26782 -15.69987 -15.61336 -15.06784 -14.90882 -14.46599 -14.25817 -13.70156 -13.11746 -12.94095 -12.46090 -12.37228 -12.06222 -11.89396 -11.64795 -11.31018 -11.10779 -11.10001 -10.97912 -10.83363 -10.75662 -10.33127 -10.23288 -9.54720 -9.43461 -8.85891 -8.80645 -8.43603 -8.09566 -6.13166 -4.19834 1.32294 1.49643 3.17335 3.29476 3.32300 3.32550 3.35357 3.62230 4.08175 4.41318 4.71218 4.81586 4.98760 5.06151 5.14570 5.19524 5.28843 5.35308 5.47718 5.59624 5.64699 5.80357 5.88247 6.12338 6.33541 6.44134 6.55208 6.71290 6.81074 6.94877 6.98872 7.26861 7.43100 7.66085 7.80132 8.02463 8.21678 8.74081 8.98359 9.45455 10.94270 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.004653 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.808334 B = 6016.145134 C = 6517.920107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.145 3.855 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.159 4.159 7 C -0.068 4.068 8 C -0.098 4.098 9 C -0.070 4.070 10 C 0.456 3.544 11 O -0.516 6.516 12 O -0.359 6.359 13 C 0.216 3.784 14 H 0.045 0.955 15 C -0.154 4.154 16 C -0.519 4.519 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.912 3.088 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.036 0.964 34 H 0.098 0.902 35 H 0.015 0.985 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 11.043 12.467 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.100 3.900 4 C -0.229 4.229 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.086 4.086 8 C -0.099 4.099 9 C -0.108 4.108 10 C 0.298 3.702 11 O -0.406 6.406 12 O -0.275 6.275 13 C 0.163 3.837 14 H 0.063 0.937 15 C -0.212 4.212 16 C -0.558 4.558 17 H 0.086 0.914 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.739 3.261 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.034 0.966 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.065 10.957 11.942 17.680 hybrid contribution -0.235 -0.717 -0.368 0.840 sum -7.300 10.239 11.574 17.091 Atomic orbital electron populations 1.23048 0.78500 1.04055 1.01029 1.86118 1.21280 1.26708 1.88218 1.18807 0.91697 0.84369 0.95143 1.21158 0.99835 0.92343 1.09597 1.20883 0.94695 0.96761 0.97745 1.20970 0.93894 0.98174 1.04714 1.20881 0.99953 0.90967 0.96821 1.18737 0.90360 0.94798 1.05961 1.20107 1.01465 0.95686 0.93529 1.23148 0.75870 0.79899 0.91251 1.90593 1.46438 1.56638 1.46882 1.86469 1.65181 1.39274 1.36617 1.20583 0.95751 0.94498 0.72847 0.93701 1.22151 0.98262 0.96218 1.04532 1.21008 1.51482 0.89768 0.93498 0.91386 1.24884 0.94799 0.99243 0.95069 1.69897 1.49435 1.35626 0.97877 0.86338 0.78869 0.83915 0.77021 1.20012 1.21072 1.19944 0.88169 0.92877 0.92630 0.85586 0.86027 0.85946 0.85328 0.87534 0.87131 0.94482 0.88341 0.96578 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.81 9.63 -19.42 -0.19 -5.00 16 3 C 0.15 2.24 6.66 -39.22 -0.26 1.98 16 4 C -0.21 -2.69 9.04 -39.43 -0.36 -3.05 16 5 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 6 C -0.16 -1.90 10.04 -39.56 -0.40 -2.30 16 7 C -0.07 -0.93 9.68 -39.60 -0.38 -1.31 16 8 C -0.10 -1.53 4.39 -104.47 -0.46 -1.99 16 9 C -0.07 -1.14 5.66 -29.03 -0.16 -1.31 16 10 C 0.46 10.11 7.92 36.01 0.29 10.39 16 11 O -0.52 -12.97 15.25 -18.75 -0.29 -13.25 16 12 O -0.36 -8.95 9.86 -39.26 -0.39 -9.34 16 13 C 0.22 6.03 2.56 -27.88 -0.07 5.96 16 14 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 15 C -0.15 -4.04 9.33 37.16 0.35 -3.69 16 16 C -0.52 -15.01 8.90 -34.44 -0.31 -15.32 16 17 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.87 11.32 55.43 0.63 -25.25 16 20 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.13 1.29 6.30 -52.48 -0.33 0.96 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.41 8.05 -51.93 -0.42 0.99 16 32 H 0.11 1.68 7.69 -51.93 -0.40 1.28 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -33.59 311.58 -6.54 -40.13 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.71 Total: 0.63 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.27 Total: -9.05 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.63 Total: -25.25 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.86 Total: -27.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.59 -6.54 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.743 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds