Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00306 * 2 1 4 4 C 1.38752 * 120.05204 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94680 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 7 7 C 1.38244 * 120.11199 * 0.55704 * 6 5 4 8 8 C 1.38171 * 120.05436 * 359.44067 * 7 6 5 9 9 C 1.50698 * 120.02521 * 180.25752 * 8 7 6 10 10 C 1.50703 * 109.47035 * 264.99879 * 9 8 7 11 11 O 1.20822 * 119.99888 * 0.02562 * 10 9 8 12 12 O 1.34229 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.45196 * 117.00130 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.47061 * 330.00062 * 13 12 10 15 15 C 1.52999 * 109.47292 * 89.99836 * 13 12 10 16 16 C 1.50706 * 109.47358 * 210.00234 * 13 12 10 17 17 H 1.08003 * 119.99710 * 359.97438 * 16 13 12 18 18 C 1.37868 * 119.99984 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00439 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00043 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.46893 * 59.99971 * 20 18 16 22 22 H 1.48494 * 109.47419 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46900 * 300.00333 * 20 18 16 24 24 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47042 * 299.99603 * 1 2 3 26 26 H 1.08996 * 109.47358 * 60.00240 * 1 2 3 27 27 H 1.08007 * 120.02913 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.97734 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.94303 * 180.29349 * 6 5 4 30 30 H 1.08002 * 119.97539 * 179.72689 * 7 6 5 31 31 H 1.08997 * 109.47634 * 25.00518 * 9 8 7 32 32 H 1.09005 * 109.47160 * 145.00516 * 9 8 7 33 33 H 1.09001 * 109.47202 * 60.00455 * 15 13 12 34 34 H 1.09006 * 109.47186 * 180.02562 * 15 13 12 35 35 H 1.08994 * 109.47239 * 300.00357 * 15 13 12 36 36 H 0.97002 * 120.00558 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 0.0047 7 6 4.0560 2.5171 -0.0006 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 0.0000 10 6 4.4237 -0.4668 -1.4153 11 8 3.9280 0.1474 -2.3302 12 8 5.1256 -1.5845 -1.6595 13 6 5.2487 -1.9958 -3.0466 14 1 4.3665 -1.6746 -3.6004 15 6 6.4963 -1.3564 -3.6594 16 6 5.3671 -3.4966 -3.1170 17 1 5.3519 -4.0826 -2.2099 18 6 5.4950 -4.1214 -4.3393 19 7 5.5140 -3.4078 -5.4438 20 14 5.6425 -5.9815 -4.4265 21 1 4.4322 -6.6025 -3.8310 22 1 5.7682 -6.4022 -5.8451 23 1 6.8450 -6.4186 -3.6726 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0014 28 1 1.3340 4.5113 -0.0019 29 1 3.7922 4.6380 0.0091 30 1 5.1344 2.5751 -0.0005 31 1 5.2326 0.2261 0.4340 32 1 3.7469 -0.7417 0.5898 33 1 7.3785 -1.6776 -3.1056 34 1 6.5884 -1.6649 -4.7008 35 1 6.4106 -0.2711 -3.6085 36 1 5.6043 -3.8473 -6.3038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = -125.860402 kcal Electronic energy + Delta-G solvation = -19749.201818 eV Core-core repulsion = 16583.944717 eV Total energy + Delta-G solvation = -3165.257101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.60113 -40.75595 -38.38229 -37.51077 -35.32324 -34.01153 -31.70956 -31.05785 -29.08854 -27.98576 -27.45474 -24.16059 -23.07147 -22.57413 -21.22718 -19.04759 -18.73809 -18.48096 -17.43633 -17.23483 -16.76696 -16.61502 -16.47029 -16.03780 -15.35723 -14.84004 -14.75324 -14.33650 -14.05256 -13.84843 -13.45050 -13.34204 -13.01864 -12.93204 -12.87789 -12.80639 -12.38923 -12.27441 -12.16634 -12.01378 -11.77165 -11.57362 -11.34889 -10.99128 -10.59608 -9.84029 -9.11494 -8.28480 -6.45970 0.30795 0.50692 1.40149 1.42364 1.45898 1.54018 2.09676 2.38978 2.42913 2.91056 3.01906 3.62789 3.85635 4.03353 4.16524 4.24257 4.32796 4.35716 4.44376 4.50337 4.54968 4.61453 4.68440 4.77732 4.80662 4.83409 5.03979 5.19617 5.37181 5.47459 5.48335 5.58183 5.63191 5.88497 5.93004 6.11596 6.45160 6.59848 7.01949 7.26758 8.79166 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.004653 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.808334 B = 6016.145134 C = 6517.920107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.121 3.879 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.131 4.131 9 C -0.057 4.057 10 C 0.450 3.550 11 O -0.550 6.550 12 O -0.366 6.366 13 C 0.217 3.783 14 H 0.002 0.998 15 C -0.140 4.140 16 C -0.550 4.550 17 H 0.067 0.933 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.985 3.015 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.262 1.262 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.022 0.978 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 11.526 13.613 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.075 3.925 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.132 4.132 9 C -0.094 4.094 10 C 0.295 3.705 11 O -0.441 6.441 12 O -0.283 6.283 13 C 0.164 3.836 14 H 0.019 0.981 15 C -0.198 4.198 16 C -0.587 4.587 17 H 0.085 0.915 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.128 0.872 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.241 11.460 13.111 18.859 hybrid contribution -0.272 -0.743 -0.716 1.067 sum -7.512 10.717 12.395 18.026 Atomic orbital electron populations 1.23305 0.76559 1.05249 1.02272 1.86058 1.23539 1.27497 1.88518 1.19147 0.92104 0.85143 0.96076 1.21497 1.01019 0.92041 1.09027 1.21361 0.95036 0.97550 0.95823 1.21381 0.94277 0.98844 1.03467 1.21192 1.01047 0.90896 0.96504 1.18902 0.90818 0.95025 1.08466 1.20186 1.03610 0.96421 0.89162 1.24385 0.74225 0.78412 0.93472 1.90563 1.47585 1.57335 1.48642 1.86468 1.66177 1.40920 1.34697 1.20304 0.94448 0.94681 0.74141 0.98058 1.21964 0.98004 0.96456 1.03369 1.21285 1.53008 0.90352 0.94104 0.91462 1.25861 0.93630 1.04592 0.94290 1.70022 1.49228 1.37852 0.98506 0.85212 0.79327 0.77202 0.77532 1.19348 1.20104 1.18674 0.87156 0.90358 0.92541 0.83435 0.82660 0.83038 0.83880 0.84338 0.86326 0.93365 0.90133 0.95869 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -10.71 9.63 -92.41 -0.89 -11.60 16 3 C 0.12 3.67 6.66 22.50 0.15 3.82 16 4 C -0.22 -5.20 9.04 22.37 0.20 -5.00 16 5 C -0.08 -1.63 10.04 22.26 0.22 -1.40 16 6 C -0.16 -3.44 10.04 22.28 0.22 -3.22 16 7 C -0.08 -2.02 9.68 22.26 0.22 -1.81 16 8 C -0.13 -4.06 4.39 -19.77 -0.09 -4.15 16 9 C -0.06 -1.84 5.66 29.10 0.16 -1.67 16 10 C 0.45 20.43 7.92 71.24 0.56 21.00 16 11 O -0.55 -28.67 15.25 21.98 0.34 -28.33 16 12 O -0.37 -18.71 9.86 -51.41 -0.51 -19.22 16 13 C 0.22 12.57 2.56 29.85 0.08 12.65 16 14 H 0.00 0.10 7.16 -2.38 -0.02 0.09 16 15 C -0.14 -7.52 9.33 71.98 0.67 -6.85 16 16 C -0.55 -32.38 8.90 25.60 0.23 -32.15 16 17 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 18 C 0.02 0.89 5.30 84.65 0.45 1.34 16 19 N -0.92 -54.12 11.32 21.44 0.24 -53.88 16 20 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 26 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 27 H 0.15 2.71 6.30 -2.91 -0.02 2.70 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.14 3.49 8.05 -2.39 -0.02 3.47 16 32 H 0.12 3.62 7.69 -2.38 -0.02 3.60 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 4.60 6.07 -2.38 -0.01 4.59 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -74.53 311.58 6.48 -68.05 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.07 Total: 15.14 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.19 Total: -15.90 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.24 Total: -53.88 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -1.06 Total: -59.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.53 6.48 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.809 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds