Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 116.99968 * 2 1 4 4 C 1.38486 * 119.98493 * 0.24818 * 3 2 1 5 5 C 1.39535 * 119.78852 * 180.23256 * 4 3 2 6 6 C 1.47741 * 120.11974 * 179.77147 * 5 4 3 7 7 O 1.21462 * 120.00328 * 359.72470 * 6 5 4 8 8 O 1.34715 * 119.99684 * 179.72637 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 12 12 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99399 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00236 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47445 * 89.99945 * 16 14 12 18 18 H 1.48504 * 109.47007 * 209.99616 * 16 14 12 19 19 H 1.48501 * 109.47243 * 329.99925 * 16 14 12 20 20 C 1.39653 * 119.75444 * 359.49757 * 5 4 3 21 21 C 1.37954 * 119.96175 * 0.27266 * 20 5 4 22 22 C 1.38294 * 120.20933 * 359.97438 * 21 20 5 23 23 C 1.50703 * 119.87100 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47345 * 300.00501 * 1 2 3 26 26 H 1.08998 * 109.46953 * 60.00543 * 1 2 3 27 27 H 1.08000 * 120.09987 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47147 * 299.99995 * 11 9 8 29 29 H 1.09002 * 109.47235 * 59.99621 * 11 9 8 30 30 H 1.08994 * 109.47571 * 179.97438 * 11 9 8 31 31 H 0.97004 * 119.99650 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.02242 * 180.30073 * 20 5 4 33 33 H 1.07999 * 119.89337 * 180.02562 * 21 20 5 34 34 H 1.08998 * 109.47107 * 90.00395 * 23 22 21 35 35 H 1.09003 * 109.46687 * 209.99849 * 23 22 21 36 36 H 1.08998 * 109.47091 * 329.99711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3722 0.0052 5 6 1.9291 3.6133 0.0003 6 6 1.1313 4.8567 0.0007 7 8 -0.0820 4.7999 0.0002 8 8 1.7495 6.0536 0.0015 9 6 0.9026 7.2330 0.0012 10 1 -0.0319 7.0092 -0.5133 11 6 0.6041 7.6469 1.4436 12 6 1.6095 8.3590 -0.7084 13 1 2.5964 8.2036 -1.1185 14 6 0.9958 9.5872 -0.8348 15 7 1.6126 10.5697 -1.4545 16 14 -0.7114 9.8557 -0.1260 17 1 -0.5962 10.3354 1.2746 18 1 -1.4310 10.8692 -0.9387 19 1 -1.4645 8.5760 -0.1506 20 6 3.3242 3.6756 0.0007 21 6 4.0659 2.5124 0.0004 22 6 3.4323 1.2832 0.0001 23 6 4.2500 0.0173 0.0003 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2128 2.3172 0.0097 28 1 0.0927 6.8324 1.9569 29 1 1.5385 7.8707 1.9582 30 1 -0.0313 8.5324 1.4435 31 1 1.1807 11.4337 -1.5438 32 1 3.8223 4.6340 0.0018 33 1 5.1447 2.5620 0.0012 34 1 4.4467 -0.2880 1.0280 35 1 3.6996 -0.7707 -0.5137 36 1 5.1948 0.1950 -0.5132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = -99.338988 kcal Electronic energy + Delta-G solvation = -19553.381040 eV Core-core repulsion = 16389.273993 eV Total energy + Delta-G solvation = -3164.107046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52651 -39.45698 -37.41026 -35.93478 -33.31935 -32.89792 -30.67209 -30.23389 -27.81238 -27.36093 -25.28491 -23.22800 -22.23965 -21.36925 -19.99939 -18.35196 -16.86364 -16.67569 -16.07564 -15.94363 -15.81202 -15.38036 -15.15112 -14.52298 -14.02208 -13.71967 -13.65284 -13.09964 -12.81424 -12.39823 -12.35327 -12.25553 -12.17594 -11.87596 -11.61778 -11.44807 -11.16503 -11.14585 -10.91292 -10.25422 -10.06890 -9.80772 -9.63798 -9.14849 -8.94638 -8.70375 -8.25126 -6.24246 -4.26746 0.76758 1.34629 2.89837 3.08853 3.17470 3.29804 3.31692 3.39837 3.84552 4.25210 4.65850 4.74289 4.91642 5.02134 5.06856 5.08161 5.14653 5.29466 5.35739 5.41274 5.50948 5.57444 5.69525 5.99595 6.08320 6.16872 6.27031 6.35308 6.36344 6.43791 6.57792 6.62503 6.99255 7.20077 7.31220 7.47539 8.18886 8.54714 8.82425 9.32642 10.87842 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.004488 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.018961 B = 6237.720000 C = 6806.702584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.109 3.891 4 C -0.146 4.146 5 C -0.082 4.082 6 C 0.497 3.503 7 O -0.519 6.519 8 O -0.333 6.333 9 C 0.191 3.809 10 H 0.047 0.953 11 C -0.170 4.170 12 C -0.525 4.525 13 H 0.088 0.912 14 C 0.080 3.920 15 N -0.888 5.888 16 Si 0.879 3.121 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.263 1.263 20 C -0.091 4.091 21 C -0.099 4.099 22 C -0.091 4.091 23 C -0.107 4.107 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.142 0.858 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -20.080 4.135 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.064 3.936 4 C -0.165 4.165 5 C -0.083 4.083 6 C 0.342 3.658 7 O -0.411 6.411 8 O -0.249 6.249 9 C 0.137 3.863 10 H 0.064 0.936 11 C -0.227 4.227 12 C -0.563 4.563 13 H 0.106 0.894 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.216 1.216 19 H -0.187 1.187 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.163 4.163 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.741 -20.026 4.066 20.508 hybrid contribution -1.381 0.632 0.391 1.568 sum 0.360 -19.394 4.457 19.902 Atomic orbital electron populations 1.23092 0.78261 1.03856 1.01881 1.86037 1.21400 1.26275 1.89067 1.18579 0.91668 0.84042 0.99290 1.21300 1.00918 0.90640 1.03626 1.19083 0.93613 0.90738 1.04882 1.21088 0.86346 0.85260 0.73124 1.90747 1.15242 1.88364 1.46706 1.86564 1.42270 1.14315 1.81706 1.20970 0.91386 0.80127 0.93806 0.93561 1.22527 1.01422 0.99949 0.98825 1.20772 1.05488 0.93366 1.36654 0.89407 1.24719 0.97595 0.95309 0.94669 1.69837 1.38049 1.02957 1.41615 0.86972 0.84820 0.78621 0.78778 1.19953 1.21640 1.18737 1.21524 0.92472 0.99771 0.97133 1.20902 1.00230 0.90564 0.99962 1.19488 0.90530 0.96482 1.02682 1.20661 0.98872 0.94361 1.02447 0.88191 0.92450 0.92391 0.84078 0.94408 0.91683 0.92471 0.92039 0.83660 0.84503 0.91125 0.91042 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.63 9.52 -19.45 -0.19 -3.81 16 3 C 0.11 1.42 6.65 -39.27 -0.26 1.16 16 4 C -0.15 -2.17 8.58 -39.01 -0.33 -2.50 16 5 C -0.08 -1.38 5.87 -105.00 -0.62 -2.00 16 6 C 0.50 10.44 7.87 34.61 0.27 10.71 16 7 O -0.52 -11.89 15.60 -19.24 -0.30 -12.19 16 8 O -0.33 -7.72 9.11 -40.53 -0.37 -8.09 16 9 C 0.19 4.86 2.16 -27.88 -0.06 4.80 16 10 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 11 C -0.17 -3.91 9.03 37.16 0.34 -3.57 16 12 C -0.53 -15.06 9.48 -34.44 -0.33 -15.39 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 15 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 16 Si 0.88 21.67 24.37 -169.99 -4.14 17.52 16 17 H -0.27 -6.44 6.87 56.52 0.39 -6.05 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 20 C -0.09 -1.32 9.61 -39.16 -0.38 -1.70 16 21 C -0.10 -1.16 9.67 -39.67 -0.38 -1.54 16 22 C -0.09 -1.07 5.90 -104.38 -0.62 -1.69 16 23 C -0.11 -0.94 9.78 36.01 0.35 -0.59 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 26 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 27 H 0.14 2.03 5.88 -52.49 -0.31 1.72 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.15 2.11 7.61 -52.48 -0.40 1.71 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 36 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -32.24 303.83 -5.29 -37.53 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.52 Total: -0.77 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.12 Total: -8.89 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.77 Total: -25.88 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.85 Total: -24.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.24 -5.29 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.808 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds