Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 116.99968 * 2 1 4 4 C 1.38486 * 119.98493 * 0.24818 * 3 2 1 5 5 C 1.39535 * 119.78852 * 180.23256 * 4 3 2 6 6 C 1.47741 * 120.11974 * 179.77147 * 5 4 3 7 7 O 1.21462 * 120.00328 * 359.72470 * 6 5 4 8 8 O 1.34715 * 119.99684 * 179.72637 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 12 12 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99399 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00236 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47445 * 89.99945 * 16 14 12 18 18 H 1.48504 * 109.47007 * 209.99616 * 16 14 12 19 19 H 1.48501 * 109.47243 * 329.99925 * 16 14 12 20 20 C 1.39653 * 119.75444 * 359.49757 * 5 4 3 21 21 C 1.37954 * 119.96175 * 0.27266 * 20 5 4 22 22 C 1.38294 * 120.20933 * 359.97438 * 21 20 5 23 23 C 1.50703 * 119.87100 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47345 * 300.00501 * 1 2 3 26 26 H 1.08998 * 109.46953 * 60.00543 * 1 2 3 27 27 H 1.08000 * 120.09987 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47147 * 299.99995 * 11 9 8 29 29 H 1.09002 * 109.47235 * 59.99621 * 11 9 8 30 30 H 1.08994 * 109.47571 * 179.97438 * 11 9 8 31 31 H 0.97004 * 119.99650 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.02242 * 180.30073 * 20 5 4 33 33 H 1.07999 * 119.89337 * 180.02562 * 21 20 5 34 34 H 1.08998 * 109.47107 * 90.00395 * 23 22 21 35 35 H 1.09003 * 109.46687 * 209.99849 * 23 22 21 36 36 H 1.08998 * 109.47091 * 329.99711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3722 0.0052 5 6 1.9291 3.6133 0.0003 6 6 1.1313 4.8567 0.0007 7 8 -0.0820 4.7999 0.0002 8 8 1.7495 6.0536 0.0015 9 6 0.9026 7.2330 0.0012 10 1 -0.0319 7.0092 -0.5133 11 6 0.6041 7.6469 1.4436 12 6 1.6095 8.3590 -0.7084 13 1 2.5964 8.2036 -1.1185 14 6 0.9958 9.5872 -0.8348 15 7 1.6126 10.5697 -1.4545 16 14 -0.7114 9.8557 -0.1260 17 1 -0.5962 10.3354 1.2746 18 1 -1.4310 10.8692 -0.9387 19 1 -1.4645 8.5760 -0.1506 20 6 3.3242 3.6756 0.0007 21 6 4.0659 2.5124 0.0004 22 6 3.4323 1.2832 0.0001 23 6 4.2500 0.0173 0.0003 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2128 2.3172 0.0097 28 1 0.0927 6.8324 1.9569 29 1 1.5385 7.8707 1.9582 30 1 -0.0313 8.5324 1.4435 31 1 1.1807 11.4337 -1.5438 32 1 3.8223 4.6340 0.0018 33 1 5.1447 2.5620 0.0012 34 1 4.4467 -0.2880 1.0280 35 1 3.6996 -0.7707 -0.5137 36 1 5.1948 0.1950 -0.5132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = -119.447495 kcal Electronic energy + Delta-G solvation = -19554.253010 eV Core-core repulsion = 16389.273993 eV Total energy + Delta-G solvation = -3164.979017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78126 -40.88323 -38.45395 -37.69578 -35.33437 -34.04677 -32.64942 -31.28180 -28.66378 -28.33973 -27.37294 -24.65332 -23.28387 -22.84682 -21.56337 -19.80274 -18.77977 -18.28911 -17.30780 -17.28092 -16.97285 -16.72379 -16.59094 -16.09428 -15.15509 -14.99492 -14.62449 -14.58142 -14.43995 -14.30186 -13.82873 -13.54971 -13.18286 -13.02973 -12.98372 -12.88671 -12.37966 -12.29054 -12.20810 -12.10475 -11.79968 -11.72461 -11.45865 -11.26712 -10.85810 -9.99352 -9.27223 -8.46455 -6.55670 -0.43530 0.30228 1.22245 1.29988 1.39467 1.46578 1.75145 2.18193 2.27674 2.65857 2.86140 3.54328 3.72368 3.85446 4.09270 4.10826 4.19261 4.32958 4.33527 4.37657 4.46728 4.49568 4.65586 4.70670 4.71243 4.76759 4.89497 5.08671 5.15328 5.25538 5.28602 5.30266 5.40085 5.54063 5.65792 6.08968 6.26107 6.47902 6.76361 7.08748 8.69469 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.004488 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.018961 B = 6237.720000 C = 6806.702584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.315 6.315 3 C 0.107 3.893 4 C -0.152 4.152 5 C -0.112 4.112 6 C 0.495 3.505 7 O -0.546 6.546 8 O -0.343 6.343 9 C 0.192 3.808 10 H 0.031 0.969 11 C -0.164 4.164 12 C -0.540 4.540 13 H 0.049 0.951 14 C 0.033 3.967 15 N -0.928 5.928 16 Si 0.939 3.061 17 H -0.249 1.249 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.097 4.097 21 C -0.089 4.089 22 C -0.081 4.081 23 C -0.106 4.106 24 H 0.131 0.869 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.276 0.724 32 H 0.139 0.861 33 H 0.174 0.826 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -22.224 5.258 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.228 6.228 3 C 0.061 3.939 4 C -0.171 4.171 5 C -0.113 4.113 6 C 0.342 3.658 7 O -0.439 6.439 8 O -0.259 6.259 9 C 0.138 3.862 10 H 0.048 0.952 11 C -0.221 4.221 12 C -0.578 4.578 13 H 0.067 0.933 14 C -0.167 4.167 15 N -0.566 5.566 16 Si 0.764 3.236 17 H -0.174 1.174 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.082 4.082 23 C -0.162 4.162 24 H 0.149 0.851 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.191 0.809 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.859 -22.191 5.197 22.867 hybrid contribution -1.308 1.129 -0.028 1.728 sum 0.551 -21.062 5.169 21.694 Atomic orbital electron populations 1.23348 0.76833 1.05873 1.01759 1.86047 1.22850 1.25210 1.88732 1.18736 0.92361 0.83928 0.98826 1.21299 1.01049 0.90631 1.04131 1.18945 0.94304 0.89260 1.08792 1.21836 0.86577 0.85489 0.71946 1.90710 1.16389 1.88547 1.48223 1.86550 1.42184 1.14786 1.82360 1.20705 0.90355 0.80177 0.94983 0.95176 1.22415 1.02089 1.00555 0.97011 1.20915 1.04345 0.95101 1.37443 0.93279 1.25533 1.01721 0.94725 0.94734 1.69951 1.40140 1.03719 1.42801 0.85995 0.79506 0.78763 0.79300 1.17393 1.20786 1.18433 1.21586 0.91659 1.00845 0.97418 1.21249 1.01804 0.89323 0.98251 1.19980 0.90353 0.97874 0.99990 1.20763 0.99237 0.92499 1.03684 0.85123 0.92475 0.92671 0.84389 0.92576 0.90907 0.92346 0.91438 0.84349 0.80884 0.89645 0.90961 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.31 -6.58 9.52 -92.50 -0.88 -7.46 16 3 C 0.11 2.61 6.65 22.47 0.15 2.76 16 4 C -0.15 -4.49 8.58 22.64 0.19 -4.29 16 5 C -0.11 -3.82 5.87 -20.11 -0.12 -3.94 16 6 C 0.49 21.38 7.87 70.33 0.55 21.93 16 7 O -0.55 -25.64 15.60 19.96 0.31 -25.33 16 8 O -0.34 -16.45 9.11 -56.24 -0.51 -16.96 16 9 C 0.19 9.98 2.16 29.85 0.06 10.05 16 10 H 0.03 1.66 6.22 -2.39 -0.01 1.65 16 11 C -0.16 -7.39 9.03 71.98 0.65 -6.74 16 12 C -0.54 -32.09 9.48 25.60 0.24 -31.85 16 13 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 14 C 0.03 1.92 5.45 84.66 0.46 2.38 16 15 N -0.93 -56.87 13.96 21.45 0.30 -56.57 16 16 Si 0.94 44.39 24.37 68.60 1.67 46.06 16 17 H -0.25 -10.79 6.87 99.48 0.68 -10.11 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 20 C -0.10 -2.77 9.61 22.54 0.22 -2.55 16 21 C -0.09 -1.86 9.67 22.22 0.21 -1.64 16 22 C -0.08 -1.68 5.90 -19.71 -0.12 -1.79 16 23 C -0.11 -1.43 9.78 71.24 0.70 -0.73 16 24 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 26 H 0.05 0.90 7.67 -2.39 -0.02 0.88 16 27 H 0.14 4.03 5.88 -2.91 -0.02 4.01 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.06 2.60 3.27 -2.39 -0.01 2.59 16 31 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.14 4.08 7.61 -2.91 -0.02 4.06 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.02 7.52 -2.39 -0.02 1.00 16 36 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 Total: -1.00 -71.48 303.83 6.22 -65.25 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.01 Total: 10.07 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.32 Total: -15.06 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.30 Total: -56.57 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.08 Total: -49.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.06 kcal Total: -71.48 6.22 -65.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.193 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds