Wall clock time and date at job start Mon Mar 30 2020 06:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00197 * 2 1 4 4 C 1.38489 * 119.97964 * 0.25951 * 3 2 1 5 5 C 1.39540 * 119.78723 * 180.22980 * 4 3 2 6 6 C 1.47739 * 120.12422 * 179.76888 * 5 4 3 7 7 O 1.21470 * 119.99620 * 359.72116 * 6 5 4 8 8 O 1.34713 * 120.00032 * 179.72462 * 6 5 4 9 9 C 1.45202 * 116.99844 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46971 * 30.00304 * 9 8 6 11 11 C 1.52996 * 109.47175 * 270.00117 * 9 8 6 12 12 C 1.50698 * 109.46697 * 149.99688 * 9 8 6 13 13 H 1.08003 * 120.00248 * 35.00756 * 12 9 8 14 14 C 1.37879 * 120.00061 * 214.99746 * 12 9 8 15 15 N 1.31514 * 120.00065 * 184.92370 * 14 12 9 16 16 Si 1.86799 * 120.00086 * 4.91820 * 14 12 9 17 17 H 1.48496 * 109.46932 * 84.83083 * 16 14 12 18 18 H 1.48491 * 109.47212 * 204.83377 * 16 14 12 19 19 H 1.48507 * 109.46996 * 324.83552 * 16 14 12 20 20 C 1.39654 * 119.75267 * 359.48974 * 5 4 3 21 21 C 1.37947 * 119.96218 * 0.27842 * 20 5 4 22 22 C 1.38302 * 120.21311 * 359.97438 * 21 20 5 23 23 C 1.50702 * 119.87581 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47707 * 60.00037 * 1 2 3 25 25 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47166 * 299.99543 * 1 2 3 27 27 H 1.07996 * 120.10947 * 359.97438 * 4 3 2 28 28 H 1.08992 * 109.47218 * 295.03411 * 11 9 8 29 29 H 1.09005 * 109.46733 * 175.03555 * 11 9 8 30 30 H 1.09000 * 109.47120 * 55.03506 * 11 9 8 31 31 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.01983 * 180.30189 * 20 5 4 33 33 H 1.07997 * 119.89745 * 179.97438 * 21 20 5 34 34 H 1.08996 * 109.47146 * 90.00282 * 23 22 21 35 35 H 1.09006 * 109.46740 * 209.99886 * 23 22 21 36 36 H 1.09000 * 109.47276 * 329.99946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3721 0.0054 5 6 1.9291 3.6133 0.0006 6 6 1.1313 4.8568 0.0011 7 8 -0.0821 4.7998 0.0008 8 8 1.7495 6.0536 0.0020 9 6 0.9025 7.2330 0.0020 10 1 -0.0326 7.0088 0.5152 11 6 0.6059 7.6479 -1.4405 12 6 1.6086 8.3584 0.7134 13 1 2.6806 8.4606 0.6317 14 6 0.8859 9.2577 1.4684 15 7 1.4871 10.2947 2.0096 16 14 -0.9472 9.0033 1.7225 17 1 -1.1651 8.0806 2.8654 18 1 -1.5929 10.3091 2.0104 19 1 -1.5407 8.4178 0.4935 20 6 3.3242 3.6756 0.0010 21 6 4.0658 2.5125 0.0005 22 6 3.4323 1.2831 0.0000 23 6 4.2499 0.0172 0.0000 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 0.2128 2.3173 0.0093 28 1 1.5310 7.9565 -1.9273 29 1 -0.1000 8.4784 -1.4418 30 1 0.1755 6.8042 -1.9800 31 1 0.9786 10.9275 2.5404 32 1 3.8222 4.6340 0.0022 33 1 5.1447 2.5619 0.0004 34 1 4.4467 -0.2882 1.0276 35 1 3.6996 -0.7708 -0.5142 36 1 5.1949 0.1950 -0.5135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:05 Heat of formation + Delta-G solvation = -108.145254 kcal Electronic energy + Delta-G solvation = -19577.273791 eV Core-core repulsion = 16412.784876 eV Total energy + Delta-G solvation = -3164.488915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48635 -39.38031 -37.37425 -35.82959 -33.21806 -32.84806 -30.62993 -30.19846 -27.78761 -27.31065 -25.42004 -23.12894 -22.20776 -21.20998 -19.87891 -18.36896 -17.03045 -16.66433 -16.03049 -15.93189 -15.76746 -15.25728 -15.06835 -14.33021 -13.97479 -13.65710 -13.65277 -12.94554 -12.70407 -12.48574 -12.33276 -12.19048 -12.17269 -11.75338 -11.42139 -11.27290 -11.11961 -11.06353 -10.98645 -10.72563 -10.07663 -9.79697 -9.51872 -9.15623 -8.91320 -8.73936 -8.22249 -6.29627 -4.33695 0.80650 1.37553 2.95126 3.10997 3.19419 3.27625 3.33224 3.47085 3.88985 4.24622 4.68385 4.76489 4.93527 5.01850 5.03739 5.13384 5.18085 5.36361 5.39637 5.44157 5.52793 5.59958 5.72796 6.02739 6.12947 6.19640 6.38836 6.39342 6.43075 6.51539 6.64041 6.68660 7.12564 7.22548 7.31604 7.48520 8.20265 8.58980 8.80487 9.29422 10.81626 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.004731 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.278952 B = 5916.958667 C = 6409.392542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.109 3.891 4 C -0.147 4.147 5 C -0.082 4.082 6 C 0.495 3.505 7 O -0.524 6.524 8 O -0.340 6.340 9 C 0.181 3.819 10 H 0.047 0.953 11 C -0.153 4.153 12 C -0.518 4.518 13 H 0.086 0.914 14 C 0.083 3.917 15 N -0.881 5.881 16 Si 0.869 3.131 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.261 1.261 20 C -0.091 4.091 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.106 4.106 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.271 0.729 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -19.324 -4.429 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.064 3.936 4 C -0.166 4.166 5 C -0.084 4.084 6 C 0.340 3.660 7 O -0.416 6.416 8 O -0.255 6.255 9 C 0.129 3.871 10 H 0.065 0.935 11 C -0.211 4.211 12 C -0.555 4.555 13 H 0.104 0.896 14 C -0.122 4.122 15 N -0.517 5.517 16 Si 0.695 3.305 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.185 1.185 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.093 4.093 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.743 -19.284 -4.314 19.837 hybrid contribution -1.454 0.281 0.265 1.505 sum 0.289 -19.003 -4.049 19.432 Atomic orbital electron populations 1.23090 0.78292 1.03821 1.01872 1.86033 1.21374 1.26316 1.89088 1.18581 0.91670 0.84030 0.99331 1.21311 1.00899 0.90685 1.03672 1.19163 0.93673 0.90920 1.04593 1.21149 0.86378 0.85444 0.73061 1.90735 1.15322 1.88461 1.47072 1.86726 1.43183 1.14241 1.81394 1.21047 0.91283 0.80062 0.94744 0.93489 1.22238 1.01293 0.99900 0.97626 1.20789 0.97105 1.07099 1.30550 0.89555 1.24903 0.98543 0.94802 0.93906 1.69850 1.36732 1.12492 1.32658 0.86965 0.85516 0.78037 0.79978 1.19564 1.20655 1.18507 1.21518 0.92500 0.99731 0.97159 1.20898 1.00198 0.90583 1.00010 1.19479 0.90522 0.96464 1.02826 1.20656 0.98820 0.94361 1.02467 0.92467 0.88212 0.92407 0.84126 0.92291 0.91912 0.95138 0.91940 0.83680 0.84546 0.91117 0.91084 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.72 9.52 -19.44 -0.19 -3.91 16 3 C 0.11 1.46 6.65 -39.28 -0.26 1.19 16 4 C -0.15 -2.24 8.58 -39.00 -0.33 -2.58 16 5 C -0.08 -1.42 5.87 -105.00 -0.62 -2.04 16 6 C 0.49 10.62 7.87 34.61 0.27 10.89 16 7 O -0.52 -12.23 15.60 -19.24 -0.30 -12.53 16 8 O -0.34 -7.98 9.11 -40.53 -0.37 -8.35 16 9 C 0.18 4.61 2.22 -27.89 -0.06 4.55 16 10 H 0.05 1.25 4.31 -51.93 -0.22 1.03 16 11 C -0.15 -3.44 9.53 37.16 0.35 -3.08 16 12 C -0.52 -14.73 9.25 -34.44 -0.32 -15.05 16 13 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 14 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.88 -26.17 13.96 55.43 0.77 -25.39 16 16 Si 0.87 21.53 26.99 -169.99 -4.59 16.94 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.26 -6.31 6.82 56.52 0.39 -5.92 16 20 C -0.09 -1.35 9.61 -39.16 -0.38 -1.73 16 21 C -0.10 -1.19 9.67 -39.66 -0.38 -1.58 16 22 C -0.09 -1.11 5.90 -104.38 -0.62 -1.73 16 23 C -0.11 -0.96 9.78 36.01 0.35 -0.61 16 24 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.14 2.08 5.88 -52.49 -0.31 1.77 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.15 2.15 7.61 -52.49 -0.40 1.76 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 36 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -32.03 310.30 -5.74 -37.76 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.65 Total: -0.91 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.10 Total: -8.28 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.85 Total: -24.80 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.03 -5.74 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.383 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds