Wall clock time and date at job start Mon Mar 30 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00273 * 2 1 4 4 C 1.38738 * 120.05540 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94264 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05663 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94179 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47178 * 90.00076 * 7 6 5 9 9 O 1.20823 * 120.00046 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99647 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47201 * 30.00482 * 11 10 8 13 13 C 1.53000 * 109.47304 * 270.00311 * 11 10 8 14 14 C 1.50702 * 109.46885 * 150.00194 * 11 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.38262 * 120.11208 * 0.25216 * 6 5 4 23 23 C 1.38150 * 120.05435 * 359.45203 * 22 6 5 24 24 H 1.09000 * 109.47063 * 60.00155 * 1 2 3 25 25 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46416 * 300.00202 * 1 2 3 27 27 H 1.08002 * 120.02688 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.97186 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47617 * 330.00124 * 7 6 5 30 30 H 1.09001 * 109.46814 * 209.99925 * 7 6 5 31 31 H 1.09004 * 109.47084 * 299.99660 * 13 11 10 32 32 H 1.08994 * 109.47175 * 60.00232 * 13 11 10 33 33 H 1.09001 * 109.47192 * 180.02562 * 13 11 10 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.07998 * 119.97234 * 179.70401 * 22 6 5 36 36 H 1.07999 * 120.02857 * 180.24902 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0183 0.0028 8 6 4.2138 5.4675 -1.4177 9 8 3.8573 4.7687 -2.3366 10 8 4.8124 6.6438 -1.6619 11 6 4.9993 7.0118 -3.0540 12 1 4.2009 6.5767 -3.6552 13 6 6.3504 6.4867 -3.5435 14 6 4.9661 8.5127 -3.1855 15 1 4.8197 9.1284 -2.3104 16 6 5.1289 9.1001 -4.4223 17 7 5.3075 8.3504 -5.4879 18 14 5.0954 10.9608 -4.5842 19 1 6.1831 11.5489 -3.7618 20 1 5.2913 11.3374 -6.0073 21 1 3.7847 11.4753 -4.1124 22 6 1.9213 3.6047 0.0079 23 6 1.2916 2.3751 0.0013 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 4.0209 0.3798 -0.0005 28 1 5.1347 2.5748 0.0000 29 1 4.9445 4.9374 0.5161 30 1 3.3585 5.7456 0.5177 31 1 7.1488 6.9219 -2.9423 32 1 6.3744 5.4012 -3.4483 33 1 6.4908 6.7634 -4.5884 34 1 5.4217 8.7637 -6.3581 35 1 1.3345 4.5114 0.0140 36 1 0.2131 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:56 Heat of formation + Delta-G solvation = -107.763055 kcal Electronic energy + Delta-G solvation = -19216.189263 eV Core-core repulsion = 16051.716922 eV Total energy + Delta-G solvation = -3164.472341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26718 -39.40212 -37.59680 -35.59829 -33.24901 -32.20370 -31.06629 -29.60877 -28.13223 -26.55809 -25.29655 -22.72299 -22.30982 -20.95846 -19.47612 -18.21315 -16.89642 -16.61800 -16.38312 -15.84330 -15.45491 -15.12019 -15.05995 -14.44143 -14.14752 -13.81137 -13.46280 -12.99449 -12.56672 -12.41059 -12.17560 -11.90655 -11.64429 -11.54447 -11.17845 -11.09069 -11.00425 -10.83478 -10.78959 -10.37183 -10.26910 -9.59774 -9.49127 -8.96739 -8.89263 -8.47766 -8.10513 -6.17167 -4.24278 1.37003 1.40446 3.06467 3.16766 3.26706 3.30084 3.32497 3.56364 4.04013 4.37457 4.72222 4.80447 4.85996 4.94315 4.97268 5.15526 5.25899 5.29040 5.37480 5.52640 5.68305 5.73325 5.85071 6.04445 6.25689 6.34147 6.64861 6.66357 6.74465 6.90816 6.94236 7.20935 7.32605 7.61614 7.75278 7.97215 8.16517 8.67617 8.91554 9.41156 10.90164 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040768 B = 0.003589 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.654943 B = 7799.718374 C = 7885.192709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.151 4.151 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.075 4.075 8 C 0.450 3.550 9 O -0.514 6.514 10 O -0.359 6.359 11 C 0.216 3.784 12 H 0.046 0.954 13 C -0.155 4.155 14 C -0.522 4.522 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.063 4.063 23 C -0.206 4.206 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.016 0.984 33 H 0.099 0.901 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -12.270 12.583 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.082 4.082 6 C -0.101 4.101 7 C -0.112 4.112 8 C 0.292 3.708 9 O -0.404 6.404 10 O -0.275 6.275 11 C 0.163 3.837 12 H 0.064 0.936 13 C -0.212 4.212 14 C -0.560 4.560 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.082 4.082 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.607 -12.614 12.057 18.659 hybrid contribution -0.275 1.045 -0.404 1.153 sum -6.882 -11.570 11.653 17.805 Atomic orbital electron populations 1.23031 0.78598 1.03698 1.01416 1.86045 1.21252 1.27169 1.88936 1.19015 0.92391 0.83995 0.96912 1.20342 0.91301 0.98477 1.06796 1.20830 0.99854 0.90952 0.96574 1.19283 0.93561 0.93900 1.03400 1.20248 1.03112 0.94753 0.93108 1.23249 0.75228 0.80756 0.91527 1.90618 1.48212 1.54731 1.46795 1.86478 1.69723 1.34926 1.36407 1.20604 0.94976 0.95370 0.72728 0.93638 1.22158 0.98029 0.96343 1.04719 1.21009 1.50998 0.89675 0.94318 0.91367 1.24897 0.94698 0.99243 0.95182 1.69896 1.48382 1.35389 0.99059 0.86327 0.78826 0.83832 0.77089 1.19930 1.21046 1.19993 1.20811 0.93838 0.97208 0.96294 1.21145 0.99843 0.92254 1.09268 0.92587 0.88430 0.92742 0.85261 0.85286 0.87422 0.87422 0.94459 0.96533 0.88277 0.92356 0.85689 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.85 10.50 -19.42 -0.20 -4.05 16 3 C 0.12 1.61 6.69 -39.22 -0.26 1.34 16 4 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 5 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 6 C -0.10 -1.46 4.38 -104.60 -0.46 -1.92 16 7 C -0.07 -1.08 5.94 -29.04 -0.17 -1.26 16 8 C 0.45 9.38 7.92 36.01 0.29 9.66 16 9 O -0.51 -12.35 15.25 -18.75 -0.29 -12.64 16 10 O -0.36 -8.58 9.86 -39.26 -0.39 -8.96 16 11 C 0.22 5.88 2.56 -27.88 -0.07 5.80 16 12 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 13 C -0.15 -3.99 9.32 37.16 0.35 -3.64 16 14 C -0.52 -14.80 8.90 -34.44 -0.31 -15.11 16 15 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.54 11.31 55.43 0.63 -24.91 16 18 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 C -0.06 -0.86 9.69 -39.60 -0.38 -1.25 16 23 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 24 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 30 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -32.79 312.74 -6.55 -39.35 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.73 Total: 0.47 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.26 Total: -10.10 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.63 Total: -24.91 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.88 Total: -25.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.79 -6.55 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.417 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds