Wall clock time and date at job start Mon Mar 30 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00273 * 2 1 4 4 C 1.38738 * 120.05540 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94264 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05663 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94179 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47178 * 90.00076 * 7 6 5 9 9 O 1.20823 * 120.00046 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99647 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47201 * 30.00482 * 11 10 8 13 13 C 1.53000 * 109.47304 * 270.00311 * 11 10 8 14 14 C 1.50702 * 109.46885 * 150.00194 * 11 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.38262 * 120.11208 * 0.25216 * 6 5 4 23 23 C 1.38150 * 120.05435 * 359.45203 * 22 6 5 24 24 H 1.09000 * 109.47063 * 60.00155 * 1 2 3 25 25 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46416 * 300.00202 * 1 2 3 27 27 H 1.08002 * 120.02688 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.97186 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47617 * 330.00124 * 7 6 5 30 30 H 1.09001 * 109.46814 * 209.99925 * 7 6 5 31 31 H 1.09004 * 109.47084 * 299.99660 * 13 11 10 32 32 H 1.08994 * 109.47175 * 60.00232 * 13 11 10 33 33 H 1.09001 * 109.47192 * 180.02562 * 13 11 10 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.07998 * 119.97234 * 179.70401 * 22 6 5 36 36 H 1.07999 * 120.02857 * 180.24902 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0183 0.0028 8 6 4.2138 5.4675 -1.4177 9 8 3.8573 4.7687 -2.3366 10 8 4.8124 6.6438 -1.6619 11 6 4.9993 7.0118 -3.0540 12 1 4.2009 6.5767 -3.6552 13 6 6.3504 6.4867 -3.5435 14 6 4.9661 8.5127 -3.1855 15 1 4.8197 9.1284 -2.3104 16 6 5.1289 9.1001 -4.4223 17 7 5.3075 8.3504 -5.4879 18 14 5.0954 10.9608 -4.5842 19 1 6.1831 11.5489 -3.7618 20 1 5.2913 11.3374 -6.0073 21 1 3.7847 11.4753 -4.1124 22 6 1.9213 3.6047 0.0079 23 6 1.2916 2.3751 0.0013 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 4.0209 0.3798 -0.0005 28 1 5.1347 2.5748 0.0000 29 1 4.9445 4.9374 0.5161 30 1 3.3585 5.7456 0.5177 31 1 7.1488 6.9219 -2.9423 32 1 6.3744 5.4012 -3.4483 33 1 6.4908 6.7634 -4.5884 34 1 5.4217 8.7637 -6.3581 35 1 1.3345 4.5114 0.0140 36 1 0.2131 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:55 Heat of formation + Delta-G solvation = -126.812420 kcal Electronic energy + Delta-G solvation = -19217.015306 eV Core-core repulsion = 16051.716922 eV Total energy + Delta-G solvation = -3165.298384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48191 -40.84212 -38.65852 -37.40677 -35.31749 -33.37898 -32.04786 -31.61979 -29.05797 -27.58688 -27.40600 -24.02455 -23.60634 -22.37150 -21.15382 -19.12948 -18.80201 -18.46164 -17.42046 -17.20937 -16.65465 -16.63354 -16.50460 -15.97474 -15.25875 -14.82955 -14.76031 -14.45518 -14.19763 -13.85607 -13.50581 -13.29282 -13.01219 -12.92208 -12.83713 -12.71937 -12.53739 -12.37799 -12.16235 -11.96218 -11.73267 -11.56148 -11.30061 -10.98193 -10.58959 -9.95930 -9.11052 -8.28174 -6.45561 0.34316 0.39376 1.40785 1.42966 1.46439 1.54599 2.08876 2.36915 2.42949 2.87579 3.02445 3.68167 3.81117 3.94286 4.15468 4.20707 4.37171 4.38831 4.41730 4.54823 4.57067 4.65832 4.73649 4.74974 4.78740 4.84996 5.06790 5.16960 5.27207 5.34979 5.49268 5.61721 5.64167 5.78291 5.94254 6.13009 6.43101 6.60760 7.02611 7.27307 8.79249 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040768 B = 0.003589 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.654943 B = 7799.718374 C = 7885.192709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.115 3.885 4 C -0.164 4.164 5 C -0.072 4.072 6 C -0.123 4.123 7 C -0.060 4.060 8 C 0.445 3.555 9 O -0.551 6.551 10 O -0.365 6.365 11 C 0.218 3.782 12 H 0.004 0.996 13 C -0.142 4.142 14 C -0.550 4.550 15 H 0.069 0.931 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.075 4.075 23 C -0.211 4.211 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.271 0.729 35 H 0.136 0.864 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -11.870 13.873 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.070 3.930 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.123 4.123 7 C -0.097 4.097 8 C 0.290 3.710 9 O -0.442 6.442 10 O -0.281 6.281 11 C 0.164 3.836 12 H 0.022 0.978 13 C -0.200 4.200 14 C -0.588 4.588 15 H 0.088 0.912 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.093 4.093 23 C -0.230 4.230 24 H 0.076 0.924 25 H 0.139 0.861 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.051 -12.235 13.373 19.449 hybrid contribution -0.230 0.767 -0.793 1.127 sum -7.281 -11.469 12.580 18.515 Atomic orbital electron populations 1.23344 0.76535 1.05612 1.02165 1.86032 1.23439 1.26662 1.88684 1.19230 0.92721 0.84688 0.96382 1.20604 0.91838 0.98962 1.06862 1.21069 1.00690 0.90983 0.96264 1.19397 0.94101 0.93915 1.04934 1.20366 1.05311 0.95375 0.88641 1.24547 0.73485 0.79128 0.93880 1.90599 1.49545 1.55374 1.48699 1.86473 1.70660 1.36838 1.34170 1.20289 0.94052 0.95106 0.74114 0.97777 1.21981 0.97754 0.96703 1.03571 1.21312 1.52183 0.90318 0.94944 0.91245 1.25870 0.93642 1.04487 0.94505 1.70024 1.48411 1.37591 0.99613 0.85214 0.79307 0.77338 0.77434 1.18725 1.20334 1.19224 1.21079 0.93920 0.98158 0.96166 1.21413 1.01124 0.91754 1.08676 0.92377 0.86083 0.91376 0.83972 0.83982 0.84452 0.84777 0.93414 0.95862 0.90215 0.92020 0.84606 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.57 10.50 -92.41 -0.97 -8.54 16 3 C 0.12 2.91 6.69 22.51 0.15 3.06 16 4 C -0.16 -4.18 9.99 22.37 0.22 -3.95 16 5 C -0.07 -1.89 9.69 22.25 0.22 -1.67 16 6 C -0.12 -3.41 4.38 -19.85 -0.09 -3.49 16 7 C -0.06 -1.64 5.94 29.10 0.17 -1.47 16 8 C 0.44 18.49 7.92 71.24 0.56 19.05 16 9 O -0.55 -27.03 15.25 21.97 0.34 -26.69 16 10 O -0.36 -17.52 9.86 -51.41 -0.51 -18.03 16 11 C 0.22 12.14 2.56 29.85 0.08 12.22 16 12 H 0.00 0.28 7.16 -2.38 -0.02 0.26 16 13 C -0.14 -7.46 9.32 71.98 0.67 -6.79 16 14 C -0.55 -31.48 8.90 25.60 0.23 -31.25 16 15 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 16 C 0.01 0.81 5.30 84.66 0.45 1.25 16 17 N -0.92 -53.39 11.31 21.45 0.24 -53.15 16 18 Si 0.98 42.91 29.54 68.60 2.03 44.93 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.08 -1.96 9.69 22.25 0.22 -1.75 16 23 C -0.21 -5.04 9.04 22.37 0.20 -4.84 16 24 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 27 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.14 2.95 8.08 -2.39 -0.02 2.93 16 30 H 0.13 2.97 8.08 -2.39 -0.02 2.95 16 31 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 4.49 6.06 -2.39 -0.01 4.47 16 34 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 35 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.15 2.71 6.30 -2.91 -0.02 2.69 16 Total: -1.00 -71.61 312.74 6.40 -65.21 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.07 Total: 14.52 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.19 Total: -18.26 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.24 Total: -53.15 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -1.14 Total: -53.25 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.61 6.40 -65.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.599 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds