Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47430 * 2 1 4 4 C 1.35907 * 117.00413 * 180.02562 * 3 2 1 5 5 C 1.38867 * 119.97977 * 0.02562 * 4 3 2 6 6 C 1.38248 * 120.24544 * 179.97438 * 5 4 3 7 7 C 1.37992 * 120.21610 * 359.74967 * 6 5 4 8 8 C 1.39617 * 119.95754 * 0.48282 * 7 6 5 9 9 C 1.47741 * 120.12141 * 179.79046 * 8 7 6 10 10 O 1.21465 * 119.99957 * 179.72224 * 9 8 7 11 11 O 1.34718 * 119.99612 * 359.72755 * 9 8 7 12 12 C 1.45206 * 116.99186 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99015 * 12 11 9 14 14 C 1.52997 * 109.47226 * 89.99988 * 12 11 9 15 15 C 1.50706 * 109.46448 * 209.99781 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47347 * 59.99862 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.38434 * 119.98515 * 180.02562 * 4 3 2 24 24 H 1.08990 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46833 * 299.99934 * 1 2 3 26 26 H 1.08999 * 109.47067 * 59.99838 * 1 2 3 27 27 H 1.09000 * 109.46833 * 240.00066 * 2 1 3 28 28 H 1.08999 * 109.47067 * 120.00162 * 2 1 3 29 29 H 1.07998 * 119.87280 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.89032 * 180.02562 * 6 5 4 31 31 H 1.08005 * 120.01638 * 180.25682 * 7 6 5 32 32 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 33 33 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 34 34 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.10786 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1993 0.4238 -0.0016 6 6 5.5707 0.5986 -0.0027 7 6 6.1088 1.8693 -0.0079 8 6 5.2669 2.9830 -0.0020 9 6 5.8391 4.3451 -0.0029 10 8 5.1046 5.3124 -0.0028 11 8 7.1757 4.5141 -0.0040 12 6 7.6672 5.8804 -0.0042 13 1 6.9524 6.5235 -0.5176 14 6 7.8410 6.3602 1.4381 15 6 8.9945 5.9365 -0.7157 16 1 9.4257 5.0354 -1.1261 17 6 9.6584 7.1383 -0.8426 18 7 9.1335 8.2355 -0.3423 19 14 11.3033 7.2079 -1.7251 20 1 11.1342 6.7418 -3.1248 21 1 11.8061 8.6052 -1.7253 22 1 12.2776 6.3319 -1.0260 23 6 3.8826 2.8047 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7840 -0.5731 -0.0016 30 1 6.2230 -0.2622 -0.0039 31 1 7.1807 2.0021 -0.0130 32 1 6.8809 6.3196 1.9527 33 1 8.2104 7.3857 1.4378 34 1 8.5558 5.7170 1.9514 35 1 9.6008 9.0808 -0.4313 36 1 3.2260 3.6623 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = -108.009533 kcal Electronic energy + Delta-G solvation = -19170.988963 eV Core-core repulsion = 16006.505934 eV Total energy + Delta-G solvation = -3164.483030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34649 -39.31360 -37.34394 -35.64038 -33.25871 -32.23207 -31.22128 -29.80356 -29.24321 -25.33214 -24.87690 -23.20991 -22.37276 -21.19361 -19.80935 -18.37029 -16.66820 -16.63751 -16.31731 -16.11393 -15.48416 -15.28831 -14.94995 -14.54472 -13.88063 -13.53589 -13.50206 -13.02874 -12.86373 -12.33017 -12.22601 -12.01826 -11.79832 -11.68085 -11.24002 -11.07734 -10.95182 -10.93731 -10.82831 -10.38337 -10.27418 -9.73912 -9.53631 -9.04484 -8.90790 -8.48124 -8.28182 -6.17369 -4.24483 0.85074 1.41299 2.91739 3.05708 3.27352 3.30714 3.33238 3.70831 3.97142 4.34206 4.61082 4.62698 4.77691 4.85457 4.95858 5.11609 5.15594 5.29925 5.35197 5.41797 5.48495 5.72483 5.80152 5.89497 6.17669 6.37761 6.48180 6.59596 6.67811 6.91136 6.92462 7.15164 7.29078 7.59631 7.73226 7.92958 8.14055 8.61707 8.87515 9.40696 10.90131 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.003690 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.944762 B = 7587.033818 C = 7937.591951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.114 3.886 5 C -0.185 4.185 6 C -0.095 4.095 7 C -0.099 4.099 8 C -0.072 4.072 9 C 0.496 3.504 10 O -0.513 6.513 11 O -0.349 6.349 12 C 0.216 3.784 13 H 0.048 0.952 14 C -0.155 4.155 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.094 4.094 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.017 0.983 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.267 0.733 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -17.445 1.293 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.069 3.931 5 C -0.204 4.204 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.073 4.073 9 C 0.339 3.661 10 O -0.404 6.404 11 O -0.265 6.265 12 C 0.163 3.837 13 H 0.066 0.934 14 C -0.213 4.213 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.740 3.260 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.113 4.113 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.036 0.964 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.758 -16.770 1.314 20.524 hybrid contribution 0.877 -0.006 -0.390 0.960 sum -10.881 -16.776 0.924 20.017 Atomic orbital electron populations 1.21775 0.92753 1.02747 1.03682 1.22778 0.95904 0.82094 1.01331 1.86089 1.18748 1.29117 1.88969 1.18688 0.82458 0.93591 0.98344 1.21408 0.94517 0.97916 1.06573 1.20927 0.94173 0.97323 0.98895 1.21515 1.01105 0.91190 0.97885 1.19172 0.92628 0.91922 1.03625 1.20926 0.82949 0.88576 0.73604 1.90770 1.61447 1.42037 1.46143 1.86538 1.20232 1.38090 1.81613 1.20683 0.94641 0.73506 0.94834 0.93433 1.22171 0.98067 1.04564 0.96506 1.20983 1.03363 0.95040 1.36573 0.91291 1.24889 0.98503 0.95004 0.95581 1.69891 1.38974 0.99120 1.44698 0.86316 0.82567 0.77128 0.80012 1.19969 1.21035 1.19937 1.20461 0.93901 0.95651 1.01259 0.90439 0.91447 0.91442 0.92038 0.92048 0.85307 0.85050 0.83814 0.96438 0.88170 0.94360 0.92317 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.91 10.13 -19.45 -0.20 -4.10 16 4 C 0.11 1.54 6.68 -39.28 -0.26 1.28 16 5 C -0.19 -2.10 9.03 -39.35 -0.36 -2.45 16 6 C -0.10 -1.11 10.02 -39.67 -0.40 -1.51 16 7 C -0.10 -1.47 9.61 -39.16 -0.38 -1.85 16 8 C -0.07 -1.28 5.87 -105.00 -0.62 -1.90 16 9 C 0.50 11.07 7.87 34.61 0.27 11.34 16 10 O -0.51 -12.73 15.60 -19.24 -0.30 -13.03 16 11 O -0.35 -8.49 9.11 -40.54 -0.37 -8.86 16 12 C 0.22 5.89 2.56 -27.88 -0.07 5.82 16 13 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 14 C -0.16 -4.01 9.33 37.16 0.35 -3.66 16 15 C -0.52 -14.75 8.90 -34.44 -0.31 -15.05 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 19 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.09 -1.52 9.53 -39.01 -0.37 -1.89 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.14 2.12 7.61 -52.48 -0.40 1.73 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.14 2.39 7.65 -52.49 -0.40 1.99 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -31.54 312.46 -6.89 -38.43 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.69 Total: -0.27 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.65 Total: -8.18 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.87 Total: -25.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.54 -6.89 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.579 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds