Wall clock time and date at job start Mon Mar 30 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35913 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38861 * 119.98166 * 359.72948 * 4 3 2 6 6 C 1.38252 * 120.24668 * 179.72070 * 5 4 3 7 7 C 1.37985 * 120.21512 * 0.55072 * 6 5 4 8 8 C 1.39618 * 119.95937 * 359.72586 * 7 6 5 9 9 C 1.47741 * 120.12292 * 179.97438 * 8 7 6 10 10 O 1.21476 * 120.00051 * 180.02562 * 9 8 7 11 11 O 1.34702 * 120.00230 * 0.02562 * 9 8 7 12 12 C 1.45199 * 117.00337 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47045 * 30.00706 * 12 11 9 14 14 C 1.53000 * 109.47455 * 270.00559 * 12 11 9 15 15 C 1.50700 * 109.47100 * 150.00429 * 12 11 9 16 16 H 1.07995 * 120.00399 * 0.02562 * 15 12 11 17 17 C 1.37886 * 119.99525 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00297 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99480 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47241 * 59.99997 * 19 17 15 21 21 H 1.48508 * 109.46889 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47122 * 299.99799 * 19 17 15 23 23 C 1.38436 * 119.98448 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08005 * 119.87697 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.89440 * 180.24961 * 6 5 4 31 31 H 1.08004 * 120.02641 * 179.70019 * 7 6 5 32 32 H 1.08998 * 109.47024 * 59.99321 * 14 12 11 33 33 H 1.08999 * 109.47373 * 179.97438 * 14 12 11 34 34 H 1.09002 * 109.47115 * 300.00105 * 14 12 11 35 35 H 0.96998 * 120.00259 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.10592 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1992 0.4240 0.0046 6 6 5.5706 0.5988 -0.0017 7 6 6.1087 1.8694 -0.0018 8 6 5.2667 2.9832 -0.0012 9 6 5.8389 4.3453 -0.0007 10 8 5.1043 5.3127 0.0003 11 8 7.1753 4.5144 -0.0013 12 6 7.6669 5.8807 -0.0001 13 1 6.9528 6.5233 0.5149 14 6 7.8386 6.3622 -1.4422 15 6 8.9952 5.9360 0.7095 16 1 9.4270 5.0345 1.1183 17 6 9.6592 7.1377 0.8367 18 7 9.1336 8.2354 0.3385 19 14 11.3061 7.2062 1.7157 20 1 12.2789 6.3314 1.0131 21 1 11.8088 8.6036 1.7169 22 1 11.1401 6.7381 3.1151 23 6 3.8824 2.8049 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7840 -0.5730 0.0095 30 1 6.2230 -0.2619 -0.0017 31 1 7.1805 2.0025 -0.0018 32 1 6.8778 6.3221 -1.9554 33 1 8.2071 7.3880 -1.4413 34 1 8.5526 5.7196 -1.9572 35 1 9.6006 9.0809 0.4283 36 1 3.2258 3.6624 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:55 Heat of formation + Delta-G solvation = -126.320018 kcal Electronic energy + Delta-G solvation = -19171.811662 eV Core-core repulsion = 16006.534631 eV Total energy + Delta-G solvation = -3165.277032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.64354 -40.80156 -38.47809 -37.53765 -35.35504 -32.94194 -32.51362 -31.53100 -30.50411 -27.48528 -26.11341 -24.30862 -23.43846 -22.83368 -21.35958 -19.74349 -18.66481 -18.20982 -17.27465 -17.09732 -17.00738 -16.82330 -16.52225 -16.33426 -15.05834 -14.78734 -14.53027 -14.42349 -14.16452 -13.92860 -13.38572 -13.28247 -13.11405 -12.99605 -12.91121 -12.82056 -12.61942 -12.40457 -12.17502 -11.94301 -11.65495 -11.63764 -11.49553 -11.03446 -10.61380 -10.17769 -9.32608 -8.29553 -6.47198 -0.39668 0.33953 1.41634 1.46579 1.53221 1.54913 1.75452 2.28957 2.45181 2.71960 3.01145 3.68540 3.74423 3.99117 4.10440 4.10749 4.21449 4.29254 4.39320 4.44373 4.51361 4.75089 4.76079 4.80456 4.89944 4.97140 5.06970 5.13666 5.27483 5.31425 5.32015 5.45681 5.57770 5.61675 5.85911 6.01595 6.38757 6.56873 6.86302 7.24008 8.78434 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.042804 B = 0.003690 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.987615 B = 7586.748707 C = 7937.696344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.334 6.334 4 C 0.116 3.884 5 C -0.162 4.162 6 C -0.078 4.078 7 C -0.104 4.104 8 C -0.100 4.100 9 C 0.490 3.510 10 O -0.552 6.552 11 O -0.351 6.351 12 C 0.217 3.783 13 H 0.006 0.994 14 C -0.143 4.143 15 C -0.550 4.550 16 H 0.071 0.929 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.114 4.114 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.174 0.826 30 H 0.176 0.824 31 H 0.141 0.859 32 H 0.020 0.980 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.272 0.728 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -21.067 -0.998 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.249 6.249 4 C 0.071 3.929 5 C -0.180 4.180 6 C -0.096 4.096 7 C -0.123 4.123 8 C -0.101 4.101 9 C 0.337 3.663 10 O -0.445 6.445 11 O -0.267 6.267 12 C 0.164 3.836 13 H 0.024 0.976 14 C -0.200 4.200 15 C -0.587 4.587 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.133 4.133 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.191 0.809 30 H 0.193 0.807 31 H 0.159 0.841 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.238 -20.420 -1.028 23.331 hybrid contribution 0.528 0.994 0.289 1.162 sum -10.710 -19.425 -0.739 22.194 Atomic orbital electron populations 1.21828 0.91805 1.04304 1.02952 1.23201 0.96797 0.80227 1.03064 1.86097 1.17983 1.32170 1.88668 1.18686 0.83563 0.93023 0.97614 1.21898 0.94011 0.99008 1.03121 1.21366 0.94985 0.96923 0.96286 1.21613 1.00699 0.91816 0.98129 1.18919 0.93558 0.89825 1.07790 1.21863 0.81850 0.90492 0.72080 1.90735 1.61785 1.43859 1.48131 1.86514 1.21815 1.36179 1.82160 1.20427 0.93687 0.74434 0.95095 0.97628 1.21998 0.98424 1.03652 0.95956 1.21264 1.03832 0.95721 1.37874 0.91077 1.25890 1.02448 0.94222 0.95910 1.70016 1.40603 0.99727 1.45244 0.85177 0.77486 0.77603 0.78795 1.18578 1.20235 1.19276 1.20348 0.93090 0.96784 1.03085 0.92239 0.92195 0.87675 0.90193 0.90145 0.80883 0.80650 0.84119 0.96044 0.89823 0.93201 0.91909 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.04 0.53 5.46 71.98 0.39 0.92 16 3 O -0.33 -7.73 10.13 -92.57 -0.94 -8.67 16 4 C 0.12 2.96 6.68 22.47 0.15 3.11 16 5 C -0.16 -2.95 9.03 22.42 0.20 -2.75 16 6 C -0.08 -1.50 10.02 22.21 0.22 -1.28 16 7 C -0.10 -2.98 9.61 22.54 0.22 -2.77 16 8 C -0.10 -3.65 5.87 -20.11 -0.12 -3.77 16 9 C 0.49 23.30 7.87 70.33 0.55 23.86 16 10 O -0.55 -29.63 15.60 19.92 0.31 -29.32 16 11 O -0.35 -17.91 9.11 -56.12 -0.51 -18.42 16 12 C 0.22 12.44 2.56 29.85 0.08 12.52 16 13 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 14 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 15 C -0.55 -31.85 8.90 25.60 0.23 -31.63 16 16 H 0.07 3.98 7.81 -2.91 -0.02 3.96 16 17 C 0.02 0.84 5.30 84.66 0.45 1.29 16 18 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 19 Si 0.99 43.21 29.54 68.60 2.03 45.24 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C -0.11 -3.80 9.53 22.64 0.22 -3.59 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.75 7.65 -2.39 -0.02 0.73 16 28 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 29 H 0.17 1.67 6.28 -2.91 -0.02 1.65 16 30 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.14 4.06 7.61 -2.91 -0.02 4.04 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 4.76 6.07 -2.39 -0.01 4.75 16 34 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.12 4.46 7.65 -2.91 -0.02 4.44 16 Total: -1.00 -72.65 312.46 6.21 -66.45 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.08 Total: 10.14 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.00 Total: -11.90 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.24 Total: -53.52 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -1.14 Total: -56.41 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.65 6.21 -66.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.873 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds