Wall clock time and date at job start Mon Mar 30 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99919 * 2 1 4 4 C 1.50694 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.37974 * 120.07655 * 0.02562 * 4 3 2 6 6 C 1.38342 * 120.14875 * 180.29726 * 5 4 3 7 7 C 1.38395 * 120.30516 * 359.44610 * 6 5 4 8 8 C 1.37925 * 120.14718 * 0.55104 * 7 6 5 9 9 C 1.39608 * 120.07972 * 180.02562 * 4 3 2 10 10 C 1.47731 * 120.14574 * 359.95598 * 9 4 3 11 11 O 1.21472 * 119.99899 * 0.02562 * 10 9 4 12 12 O 1.34713 * 119.99970 * 180.02562 * 10 9 4 13 13 C 1.45196 * 117.00030 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46920 * 29.99813 * 13 12 10 15 15 C 1.52993 * 109.47149 * 269.99886 * 13 12 10 16 16 C 1.50699 * 109.47201 * 149.99417 * 13 12 10 17 17 H 1.08001 * 119.99746 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00113 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99735 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99905 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47050 * 60.00082 * 20 18 16 22 22 H 1.48502 * 109.46932 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46818 * 299.99997 * 20 18 16 24 24 H 1.09007 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47632 * 299.99785 * 1 2 3 26 26 H 1.09000 * 109.47209 * 60.00102 * 1 2 3 27 27 H 1.08995 * 109.46700 * 60.00189 * 3 2 1 28 28 H 1.08997 * 109.47169 * 300.00276 * 3 2 1 29 29 H 1.08002 * 119.92160 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.84804 * 179.71726 * 6 5 4 31 31 H 1.07995 * 119.92634 * 180.30083 * 7 6 5 32 32 H 1.07996 * 120.07410 * 179.70736 * 8 7 6 33 33 H 1.09001 * 109.47150 * 299.99787 * 15 13 12 34 34 H 1.09000 * 109.47363 * 59.99903 * 15 13 12 35 35 H 1.08995 * 109.47573 * 179.97438 * 15 13 12 36 36 H 0.97001 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.1075 -0.0583 0.0006 6 6 5.4865 -0.1692 0.0074 7 6 6.2784 0.9657 0.0027 8 6 5.6967 2.2163 0.0027 9 6 4.3053 2.3356 0.0013 10 6 3.6752 3.6718 0.0004 11 8 2.4647 3.7724 -0.0005 12 8 4.4431 4.7786 0.0005 13 6 3.7560 6.0577 0.0001 14 1 2.7998 5.9566 0.5137 15 6 3.5151 6.5068 -1.4424 16 6 4.6019 7.0826 0.7108 17 1 5.5603 6.8009 1.1213 18 6 4.1527 8.3802 0.8361 19 7 2.9859 8.7232 0.3358 20 14 5.2016 9.6507 1.7164 21 1 6.5041 9.7879 1.0166 22 1 4.4987 10.9589 1.7161 23 1 5.4354 9.2152 3.1167 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.4953 -0.9480 -0.0004 30 1 5.9471 -1.1460 0.0119 31 1 7.3543 0.8720 0.0031 32 1 6.3158 3.1012 0.0039 33 1 4.4712 6.6079 -1.9559 34 1 2.9032 5.7655 -1.9564 35 1 2.9988 7.4668 -1.4427 36 1 2.6697 9.6360 0.4242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:50 Heat of formation + Delta-G solvation = -111.389602 kcal Electronic energy + Delta-G solvation = -19696.668193 eV Core-core repulsion = 16532.038592 eV Total energy + Delta-G solvation = -3164.629600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13778 -38.57755 -37.43941 -35.74193 -33.30223 -31.90066 -31.24915 -29.46526 -27.33590 -25.47642 -25.29602 -23.95272 -21.91656 -20.94391 -19.78243 -17.55557 -16.64181 -16.30984 -16.20612 -15.88687 -15.55654 -14.94920 -14.73934 -14.52902 -14.26046 -13.89089 -13.12831 -12.96643 -12.59962 -12.19905 -12.05812 -11.90676 -11.63607 -11.31338 -11.24265 -11.06811 -11.00850 -10.85779 -10.40705 -10.29087 -9.81362 -9.61261 -9.53724 -8.94801 -8.88848 -8.64678 -8.50135 -6.20075 -4.27110 0.92362 1.41893 3.09151 3.25550 3.28872 3.30985 3.60991 3.70182 3.95568 4.32246 4.82605 4.99094 5.08520 5.13037 5.23336 5.34142 5.35339 5.56179 5.60771 5.63129 5.71893 5.79284 5.89366 6.12976 6.35734 6.45966 6.52150 6.63287 6.87477 6.88511 6.93301 7.12670 7.18791 7.56776 7.69860 7.89716 8.11305 8.58308 8.84765 9.38274 10.87370 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.004939 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.626451 B = 5668.022150 C = 6497.924294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.399 6.399 3 C 0.104 3.896 4 C -0.030 4.030 5 C -0.116 4.116 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.060 4.060 9 C -0.114 4.114 10 C 0.495 3.505 11 O -0.519 6.519 12 O -0.349 6.349 13 C 0.216 3.784 14 H 0.047 0.953 15 C -0.155 4.155 16 C -0.522 4.522 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.912 3.088 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.100 0.900 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -16.051 -1.273 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.318 6.318 3 C 0.029 3.971 4 C -0.030 4.030 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.156 4.156 8 C -0.078 4.078 9 C -0.115 4.115 10 C 0.340 3.660 11 O -0.411 6.411 12 O -0.265 6.265 13 C 0.164 3.836 14 H 0.065 0.935 15 C -0.212 4.212 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.739 3.261 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.118 0.882 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.986 -15.939 -1.294 16.022 hybrid contribution 0.168 1.067 0.387 1.147 sum 1.154 -14.873 -0.907 14.945 Atomic orbital electron populations 1.22686 0.80755 1.02293 1.00413 1.87733 1.19875 1.28526 1.95695 1.21480 0.89152 0.83526 1.02988 1.19762 0.94519 0.92367 0.96391 1.20917 0.94541 0.97144 1.00784 1.21377 0.93735 0.98724 0.97497 1.21163 1.00202 0.92191 1.02030 1.21523 0.93391 0.98624 0.94281 1.19191 0.94055 0.90444 1.07825 1.21034 0.85542 0.86043 0.73374 1.90730 1.15451 1.88030 1.46897 1.86538 1.42007 1.16392 1.81557 1.20662 0.93831 0.74326 0.94773 0.93488 1.22163 0.99794 1.02757 0.96525 1.20981 1.05202 0.93195 1.36606 0.91325 1.24880 0.95378 0.98103 0.95543 1.69887 1.18681 1.19434 1.44704 0.86322 0.80006 0.79730 0.80014 1.19912 1.21021 1.19974 0.89823 0.93916 0.93952 0.90376 0.90430 0.84463 0.85663 0.85384 0.83945 0.94390 0.96521 0.88201 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.53 9.19 -35.23 -0.32 -5.85 16 3 C 0.10 1.64 4.58 36.00 0.16 1.81 16 4 C -0.03 -0.48 5.91 -104.21 -0.62 -1.09 16 5 C -0.12 -1.53 9.37 -39.64 -0.37 -1.90 16 6 C -0.10 -1.08 10.04 -39.49 -0.40 -1.47 16 7 C -0.14 -1.65 10.03 -39.64 -0.40 -2.05 16 8 C -0.06 -0.90 9.62 -39.17 -0.38 -1.28 16 9 C -0.11 -2.00 5.87 -104.98 -0.62 -2.62 16 10 C 0.49 10.72 7.85 34.61 0.27 10.99 16 11 O -0.52 -12.02 12.67 -19.24 -0.24 -12.26 16 12 O -0.35 -8.37 9.12 -40.53 -0.37 -8.74 16 13 C 0.22 5.81 2.56 -27.89 -0.07 5.74 16 14 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -3.93 9.33 37.15 0.35 -3.58 16 16 C -0.52 -14.61 8.90 -34.44 -0.31 -14.91 16 17 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 20 Si 0.91 21.00 29.54 -169.99 -5.02 15.97 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.33 7.34 -51.93 -0.38 0.94 16 28 H 0.08 1.30 7.34 -51.93 -0.38 0.92 16 29 H 0.14 1.64 7.00 -52.49 -0.37 1.27 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 2.12 7.61 -52.49 -0.40 1.72 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 36 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -30.30 309.00 -6.75 -37.05 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.72 Total: 0.96 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.35 Total: -7.25 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.63 Total: -24.54 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.94 Total: -26.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.30 -6.75 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.343 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds