Wall clock time and date at job start Mon Mar 30 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99919 * 2 1 4 4 C 1.50694 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.37974 * 120.07655 * 0.02562 * 4 3 2 6 6 C 1.38342 * 120.14875 * 180.29726 * 5 4 3 7 7 C 1.38395 * 120.30516 * 359.44610 * 6 5 4 8 8 C 1.37925 * 120.14718 * 0.55104 * 7 6 5 9 9 C 1.39608 * 120.07972 * 180.02562 * 4 3 2 10 10 C 1.47731 * 120.14574 * 359.95598 * 9 4 3 11 11 O 1.21472 * 119.99899 * 0.02562 * 10 9 4 12 12 O 1.34713 * 119.99970 * 180.02562 * 10 9 4 13 13 C 1.45196 * 117.00030 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46920 * 29.99813 * 13 12 10 15 15 C 1.52993 * 109.47149 * 269.99886 * 13 12 10 16 16 C 1.50699 * 109.47201 * 149.99417 * 13 12 10 17 17 H 1.08001 * 119.99746 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00113 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99735 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99905 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47050 * 60.00082 * 20 18 16 22 22 H 1.48502 * 109.46932 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46818 * 299.99997 * 20 18 16 24 24 H 1.09007 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47632 * 299.99785 * 1 2 3 26 26 H 1.09000 * 109.47209 * 60.00102 * 1 2 3 27 27 H 1.08995 * 109.46700 * 60.00189 * 3 2 1 28 28 H 1.08997 * 109.47169 * 300.00276 * 3 2 1 29 29 H 1.08002 * 119.92160 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.84804 * 179.71726 * 6 5 4 31 31 H 1.07995 * 119.92634 * 180.30083 * 7 6 5 32 32 H 1.07996 * 120.07410 * 179.70736 * 8 7 6 33 33 H 1.09001 * 109.47150 * 299.99787 * 15 13 12 34 34 H 1.09000 * 109.47363 * 59.99903 * 15 13 12 35 35 H 1.08995 * 109.47573 * 179.97438 * 15 13 12 36 36 H 0.97001 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.1075 -0.0583 0.0006 6 6 5.4865 -0.1692 0.0074 7 6 6.2784 0.9657 0.0027 8 6 5.6967 2.2163 0.0027 9 6 4.3053 2.3356 0.0013 10 6 3.6752 3.6718 0.0004 11 8 2.4647 3.7724 -0.0005 12 8 4.4431 4.7786 0.0005 13 6 3.7560 6.0577 0.0001 14 1 2.7998 5.9566 0.5137 15 6 3.5151 6.5068 -1.4424 16 6 4.6019 7.0826 0.7108 17 1 5.5603 6.8009 1.1213 18 6 4.1527 8.3802 0.8361 19 7 2.9859 8.7232 0.3358 20 14 5.2016 9.6507 1.7164 21 1 6.5041 9.7879 1.0166 22 1 4.4987 10.9589 1.7161 23 1 5.4354 9.2152 3.1167 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.4953 -0.9480 -0.0004 30 1 5.9471 -1.1460 0.0119 31 1 7.3543 0.8720 0.0031 32 1 6.3158 3.1012 0.0039 33 1 4.4712 6.6079 -1.9559 34 1 2.9032 5.7655 -1.9564 35 1 2.9988 7.4668 -1.4427 36 1 2.6697 9.6360 0.4242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:49 Heat of formation + Delta-G solvation = -128.719069 kcal Electronic energy + Delta-G solvation = -19697.419655 eV Core-core repulsion = 16532.038592 eV Total energy + Delta-G solvation = -3165.381062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65250 -39.99745 -38.52395 -37.58476 -35.36576 -33.02784 -32.56509 -31.40843 -28.38217 -27.48664 -26.53082 -25.34618 -23.45805 -22.31508 -21.45810 -19.16338 -18.53946 -17.82598 -17.37647 -17.17228 -17.03830 -16.57823 -16.47345 -15.59853 -15.42593 -15.28640 -14.67301 -14.46253 -14.07210 -13.81031 -13.58609 -13.21621 -13.13718 -13.01500 -12.83531 -12.67748 -12.46761 -12.41310 -12.16701 -12.05399 -11.62428 -11.21585 -11.02685 -10.87730 -10.61486 -10.02821 -9.76259 -8.30279 -6.47516 -0.30887 0.34247 1.41160 1.45378 1.53187 1.60138 1.93030 2.40264 2.61513 2.75923 3.00579 3.71455 3.78620 4.01016 4.13484 4.32173 4.34052 4.43215 4.48851 4.52884 4.53218 4.59684 4.75097 4.76399 4.80283 4.82432 5.06012 5.10105 5.33308 5.38364 5.45411 5.48652 5.59135 5.86276 5.91288 6.02807 6.08675 6.56525 6.88522 7.23933 8.77468 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.004939 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.626451 B = 5668.022150 C = 6497.924294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.113 3.887 4 C -0.045 4.045 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.125 4.125 8 C -0.069 4.069 9 C -0.144 4.144 10 C 0.487 3.513 11 O -0.546 6.546 12 O -0.355 6.355 13 C 0.219 3.781 14 H 0.008 0.992 15 C -0.141 4.141 16 C -0.550 4.550 17 H 0.068 0.932 18 C 0.017 3.983 19 N -0.917 5.917 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.115 0.885 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.046 0.954 34 H 0.021 0.979 35 H 0.082 0.918 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -18.059 -1.009 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.037 3.963 4 C -0.046 4.046 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.143 4.143 8 C -0.087 4.087 9 C -0.145 4.145 10 C 0.334 3.666 11 O -0.439 6.439 12 O -0.271 6.271 13 C 0.166 3.834 14 H 0.025 0.975 15 C -0.199 4.199 16 C -0.587 4.587 17 H 0.087 0.913 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.133 0.867 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.190 0.810 31 H 0.185 0.815 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.146 -17.975 -1.039 18.278 hybrid contribution -0.546 1.520 0.297 1.642 sum 2.601 -16.455 -0.743 16.676 Atomic orbital electron populations 1.22948 0.79191 1.04338 1.00484 1.87710 1.21571 1.26997 1.95631 1.21170 0.89971 0.84157 1.00999 1.19857 0.94197 0.93078 0.97426 1.21183 0.95916 0.96133 1.00009 1.21910 0.92656 1.00573 0.93832 1.21583 1.02231 0.90697 0.99767 1.21629 0.92080 1.00293 0.94679 1.19065 0.95442 0.88212 1.11779 1.21916 0.85468 0.86873 0.72307 1.90704 1.16606 1.88402 1.48215 1.86518 1.42036 1.16245 1.82314 1.20378 0.92313 0.75807 0.94949 0.97454 1.21981 1.00026 1.01874 0.96017 1.21257 1.05514 0.94152 1.37795 0.91334 1.25841 0.96571 0.99965 0.95878 1.70011 1.20128 1.20128 1.45216 0.85213 0.78470 0.76809 0.78803 1.18695 1.20172 1.19354 0.86724 0.93958 0.93869 0.92630 0.92440 0.82903 0.81017 0.81520 0.84530 0.93501 0.95969 0.89901 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -10.91 9.19 -148.98 -1.37 -12.28 16 3 C 0.11 3.73 4.58 71.23 0.33 4.06 16 4 C -0.05 -1.43 5.91 -19.60 -0.12 -1.55 16 5 C -0.11 -2.71 9.37 22.23 0.21 -2.50 16 6 C -0.07 -1.29 10.04 22.33 0.22 -1.06 16 7 C -0.13 -2.50 10.03 22.23 0.22 -2.28 16 8 C -0.07 -1.99 9.62 22.54 0.22 -1.78 16 9 C -0.14 -5.16 5.87 -20.10 -0.12 -5.28 16 10 C 0.49 22.35 7.85 70.33 0.55 22.90 16 11 O -0.55 -27.25 12.67 19.93 0.25 -26.99 16 12 O -0.35 -17.88 9.12 -56.23 -0.51 -18.39 16 13 C 0.22 12.35 2.56 29.85 0.08 12.42 16 14 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 15 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 16 C -0.55 -31.63 8.90 25.60 0.23 -31.40 16 17 H 0.07 3.84 7.81 -2.91 -0.02 3.81 16 18 C 0.02 0.96 5.30 84.66 0.45 1.41 16 19 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 20 Si 0.98 43.00 29.54 68.60 2.03 45.02 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 2.05 7.34 -2.39 -0.02 2.03 16 28 H 0.06 2.09 7.34 -2.39 -0.02 2.07 16 29 H 0.15 3.14 7.00 -2.91 -0.02 3.12 16 30 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 4.05 7.61 -2.91 -0.02 4.03 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 4.66 6.07 -2.39 -0.01 4.65 16 36 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -68.87 309.00 5.90 -62.97 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.07 Total: 12.59 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.19 Total: -10.06 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.24 Total: -52.85 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.63 Total: -57.67 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.87 5.90 -62.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.750 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds