Wall clock time and date at job start Mon Mar 30 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00367 * 2 1 4 4 H 1.08999 * 109.47461 * 29.99382 * 3 2 1 5 5 C 1.50696 * 109.47562 * 150.00080 * 3 2 1 6 6 O 1.20833 * 119.99655 * 4.99201 * 5 3 2 7 7 O 1.34222 * 120.00432 * 185.27468 * 5 3 2 8 8 C 1.45201 * 117.00137 * 179.71953 * 7 5 3 9 9 H 1.08993 * 109.47491 * 330.00073 * 8 7 5 10 10 C 1.52996 * 109.46934 * 90.00375 * 8 7 5 11 11 C 1.50704 * 109.46907 * 209.99697 * 8 7 5 12 12 H 1.07998 * 120.00571 * 0.02562 * 11 8 7 13 13 C 1.37887 * 119.99671 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00086 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99784 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46793 * 90.00407 * 15 13 11 17 17 H 1.48497 * 109.47311 * 210.00105 * 15 13 11 18 18 H 1.48491 * 109.47214 * 330.00626 * 15 13 11 19 19 C 1.50706 * 109.47070 * 269.99866 * 3 2 1 20 20 C 1.38243 * 119.99508 * 324.72683 * 19 3 2 21 21 C 1.38234 * 119.99331 * 179.79057 * 20 19 3 22 22 C 1.38236 * 120.00521 * 0.43719 * 21 20 19 23 23 C 1.38236 * 119.99400 * 359.81541 * 22 21 20 24 24 C 1.38230 * 120.00664 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47328 * 300.00660 * 1 2 3 26 26 H 1.09004 * 109.47084 * 60.00010 * 1 2 3 27 27 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47062 * 180.02562 * 10 8 7 29 29 H 1.09005 * 109.47320 * 299.99428 * 10 8 7 30 30 H 1.08999 * 109.47835 * 59.99944 * 10 8 7 31 31 H 0.96993 * 119.99970 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.00017 * 359.97438 * 20 19 3 33 33 H 1.08007 * 119.99872 * 180.27559 * 21 20 19 34 34 H 1.08001 * 120.00230 * 179.83676 * 22 21 20 35 35 H 1.08001 * 119.99527 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00274 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5137 5 6 3.3387 1.2638 0.7103 6 8 3.7879 0.2083 1.0900 7 8 4.0201 2.3998 0.9263 8 6 5.2895 2.2850 1.6220 9 1 5.2553 1.4342 2.3024 10 6 6.4123 2.0787 0.6034 11 6 5.5482 3.5455 2.4064 12 1 4.8303 4.3521 2.3846 13 6 6.7011 3.6687 3.1527 14 7 7.5751 2.6863 3.1796 15 14 7.0221 5.2314 4.1244 16 1 6.4504 5.0927 5.4879 17 1 8.4859 5.4614 4.2225 18 1 6.3853 6.3824 3.4354 19 6 2.2147 1.7642 -1.4209 20 6 2.5651 0.8515 -2.3983 21 6 2.7483 1.2717 -3.7024 22 6 2.5900 2.6060 -4.0275 23 6 2.2447 3.5194 -3.0490 24 6 2.0572 3.0986 -1.7457 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 7.3652 1.9921 1.1256 29 1 6.2253 1.1670 0.0360 30 1 6.4466 2.9295 -0.0770 31 1 8.3862 2.7731 3.7042 32 1 2.6928 -0.1902 -2.1435 33 1 3.0178 0.5580 -4.4669 34 1 2.7357 2.9347 -5.0459 35 1 2.1214 4.5619 -3.3029 36 1 1.7870 3.8122 -0.9814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:00 Heat of formation + Delta-G solvation = -105.903049 kcal Electronic energy + Delta-G solvation = -20029.034670 eV Core-core repulsion = 16864.642985 eV Total energy + Delta-G solvation = -3164.391686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12602 -38.80838 -37.48393 -35.53175 -33.28887 -32.04298 -30.81211 -29.60847 -27.83227 -25.88474 -25.29585 -22.48146 -22.41958 -21.20124 -19.62272 -17.41136 -17.02407 -16.90182 -16.07399 -15.76940 -15.53067 -14.61203 -14.58607 -14.49702 -14.47404 -13.63717 -13.29048 -12.92058 -12.77750 -12.43471 -12.07304 -11.83735 -11.50992 -11.25139 -11.16355 -11.05284 -10.90840 -10.84259 -10.35866 -10.28009 -10.05631 -9.57007 -9.51101 -8.90315 -8.83040 -8.66368 -8.48695 -6.18018 -4.25130 1.32366 1.49413 2.94467 3.04857 3.24765 3.30567 3.35404 3.79160 4.25594 4.44980 4.65561 4.91835 5.05563 5.11994 5.15106 5.20698 5.32259 5.35682 5.57444 5.59718 5.64931 5.68546 5.97935 6.10614 6.50134 6.56280 6.56419 6.65436 6.90506 6.93208 7.03580 7.05555 7.17177 7.59946 7.73604 7.94130 8.13983 8.63725 8.88116 9.40069 10.89511 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.005514 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.615566 B = 5076.940641 C = 5584.608639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.139 3.861 4 H 0.102 0.898 5 C 0.458 3.542 6 O -0.498 6.498 7 O -0.350 6.350 8 C 0.217 3.783 9 H 0.047 0.953 10 C -0.154 4.154 11 C -0.520 4.520 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.912 3.088 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.111 4.111 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.091 4.091 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -0.414 -11.320 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.079 3.921 4 H 0.119 0.881 5 C 0.299 3.701 6 O -0.386 6.386 7 O -0.267 6.267 8 C 0.165 3.835 9 H 0.064 0.936 10 C -0.211 4.211 11 C -0.558 4.558 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.739 3.261 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.111 4.111 20 C -0.107 4.107 21 C -0.145 4.145 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.109 4.109 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.458 -0.930 -11.094 16.708 hybrid contribution 0.209 0.862 0.551 1.045 sum -12.249 -0.068 -10.543 16.162 Atomic orbital electron populations 1.22894 0.80406 1.03160 1.00270 1.88009 1.19863 1.24699 1.94703 1.20226 0.92707 0.86627 0.92498 0.88080 1.22718 0.86139 0.83743 0.77547 1.90620 1.68607 1.31874 1.47518 1.86463 1.36966 1.33101 1.70132 1.20672 0.74116 0.99068 0.89673 0.93560 1.22147 1.02990 0.97397 0.98608 1.21011 1.05860 1.01037 1.27934 0.91285 1.24893 0.95366 0.97327 0.96393 1.69902 1.10505 1.31694 1.40538 0.86267 0.77448 0.82380 0.80000 1.20388 1.20931 1.19594 1.19951 1.02525 0.94431 0.94214 1.21039 0.97038 1.00088 0.92501 1.21120 1.00964 0.96071 0.96305 1.21181 0.99350 0.93489 0.99318 1.21090 1.00495 0.99592 0.92967 1.21035 0.98510 0.94649 0.96731 0.93613 0.93701 0.89070 0.88223 0.96525 0.94420 0.92371 0.85393 0.86037 0.86180 0.85845 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.81 101.05 1.09 1.41 16 2 O -0.35 -5.71 9.04 -55.14 -0.50 -6.21 16 3 C 0.14 2.33 2.84 -29.03 -0.08 2.24 16 4 H 0.10 1.42 7.70 -51.93 -0.40 1.02 16 5 C 0.46 10.20 7.24 36.00 0.26 10.46 16 6 O -0.50 -12.68 15.73 -25.47 -0.40 -13.08 16 7 O -0.35 -8.54 9.85 -39.24 -0.39 -8.93 16 8 C 0.22 5.96 2.56 -27.88 -0.07 5.89 16 9 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 10 C -0.15 -4.03 9.32 37.16 0.35 -3.68 16 11 C -0.52 -14.72 8.90 -34.43 -0.31 -15.03 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 15 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.11 -1.71 4.93 -104.62 -0.52 -2.22 16 20 C -0.09 -1.31 9.35 -39.58 -0.37 -1.68 16 21 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 22 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.09 -1.26 9.68 -39.59 -0.38 -1.64 16 25 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.13 1.92 7.64 -52.49 -0.40 1.52 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -32.46 315.45 -7.08 -39.54 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.83 Total: 0.94 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.32 Total: -8.24 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.63 Total: -24.88 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.29 Total: -28.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.46 -7.08 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.365 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds