Wall clock time and date at job start Mon Mar 30 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00367 * 2 1 4 4 H 1.08999 * 109.47461 * 29.99382 * 3 2 1 5 5 C 1.50696 * 109.47562 * 150.00080 * 3 2 1 6 6 O 1.20833 * 119.99655 * 4.99201 * 5 3 2 7 7 O 1.34222 * 120.00432 * 185.27468 * 5 3 2 8 8 C 1.45201 * 117.00137 * 179.71953 * 7 5 3 9 9 H 1.08993 * 109.47491 * 330.00073 * 8 7 5 10 10 C 1.52996 * 109.46934 * 90.00375 * 8 7 5 11 11 C 1.50704 * 109.46907 * 209.99697 * 8 7 5 12 12 H 1.07998 * 120.00571 * 0.02562 * 11 8 7 13 13 C 1.37887 * 119.99671 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00086 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99784 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46793 * 90.00407 * 15 13 11 17 17 H 1.48497 * 109.47311 * 210.00105 * 15 13 11 18 18 H 1.48491 * 109.47214 * 330.00626 * 15 13 11 19 19 C 1.50706 * 109.47070 * 269.99866 * 3 2 1 20 20 C 1.38243 * 119.99508 * 324.72683 * 19 3 2 21 21 C 1.38234 * 119.99331 * 179.79057 * 20 19 3 22 22 C 1.38236 * 120.00521 * 0.43719 * 21 20 19 23 23 C 1.38236 * 119.99400 * 359.81541 * 22 21 20 24 24 C 1.38230 * 120.00664 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47328 * 300.00660 * 1 2 3 26 26 H 1.09004 * 109.47084 * 60.00010 * 1 2 3 27 27 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47062 * 180.02562 * 10 8 7 29 29 H 1.09005 * 109.47320 * 299.99428 * 10 8 7 30 30 H 1.08999 * 109.47835 * 59.99944 * 10 8 7 31 31 H 0.96993 * 119.99970 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.00017 * 359.97438 * 20 19 3 33 33 H 1.08007 * 119.99872 * 180.27559 * 21 20 19 34 34 H 1.08001 * 120.00230 * 179.83676 * 22 21 20 35 35 H 1.08001 * 119.99527 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00274 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5137 5 6 3.3387 1.2638 0.7103 6 8 3.7879 0.2083 1.0900 7 8 4.0201 2.3998 0.9263 8 6 5.2895 2.2850 1.6220 9 1 5.2553 1.4342 2.3024 10 6 6.4123 2.0787 0.6034 11 6 5.5482 3.5455 2.4064 12 1 4.8303 4.3521 2.3846 13 6 6.7011 3.6687 3.1527 14 7 7.5751 2.6863 3.1796 15 14 7.0221 5.2314 4.1244 16 1 6.4504 5.0927 5.4879 17 1 8.4859 5.4614 4.2225 18 1 6.3853 6.3824 3.4354 19 6 2.2147 1.7642 -1.4209 20 6 2.5651 0.8515 -2.3983 21 6 2.7483 1.2717 -3.7024 22 6 2.5900 2.6060 -4.0275 23 6 2.2447 3.5194 -3.0490 24 6 2.0572 3.0986 -1.7457 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 7.3652 1.9921 1.1256 29 1 6.2253 1.1670 0.0360 30 1 6.4466 2.9295 -0.0770 31 1 8.3862 2.7731 3.7042 32 1 2.6928 -0.1902 -2.1435 33 1 3.0178 0.5580 -4.4669 34 1 2.7357 2.9347 -5.0459 35 1 2.1214 4.5619 -3.3029 36 1 1.7870 3.8122 -0.9814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:00 Heat of formation + Delta-G solvation = -124.365876 kcal Electronic energy + Delta-G solvation = -20029.835278 eV Core-core repulsion = 16864.642985 eV Total energy + Delta-G solvation = -3165.192294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68589 -40.16335 -38.68843 -37.44270 -35.37418 -33.21529 -31.79881 -31.66097 -28.99399 -27.49309 -26.95843 -24.05861 -23.46736 -22.67893 -21.37817 -19.07275 -18.72099 -18.21789 -17.66590 -17.31526 -16.90609 -16.43790 -16.18747 -15.55568 -15.44543 -15.15005 -14.49741 -14.29963 -14.25221 -13.92304 -13.65325 -13.43655 -13.16374 -13.01196 -12.85299 -12.52080 -12.40644 -12.20727 -12.15281 -11.92478 -11.66103 -11.51640 -11.03092 -10.86226 -10.61946 -9.82731 -9.75453 -8.29729 -6.47310 0.27633 0.49624 1.21327 1.40630 1.44598 1.52823 1.61581 2.37222 2.75021 3.00628 3.11697 3.49528 3.78532 3.84301 4.10066 4.18556 4.30219 4.47619 4.48517 4.51811 4.62278 4.67988 4.74030 4.78272 4.80095 4.99388 5.09009 5.14376 5.45655 5.52948 5.53953 5.57187 5.59698 5.85813 5.96058 6.01742 6.08098 6.57770 6.88735 7.24144 8.78486 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.005514 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.615566 B = 5076.940641 C = 5584.608639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.382 6.382 3 C 0.152 3.848 4 H 0.127 0.873 5 C 0.450 3.550 6 O -0.539 6.539 7 O -0.351 6.351 8 C 0.219 3.781 9 H 0.005 0.995 10 C -0.140 4.140 11 C -0.547 4.547 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.919 5.919 15 Si 0.986 3.014 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.131 4.131 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.103 4.103 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.017 0.983 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.953 1.613 -12.565 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.301 6.301 3 C 0.093 3.907 4 H 0.145 0.855 5 C 0.294 3.706 6 O -0.429 6.429 7 O -0.267 6.267 8 C 0.166 3.834 9 H 0.023 0.977 10 C -0.197 4.197 11 C -0.584 4.584 12 H 0.090 0.910 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.809 3.191 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.131 4.131 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.142 4.142 24 C -0.121 4.121 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.501 1.091 -12.359 18.336 hybrid contribution 0.466 0.143 0.873 1.000 sum -13.034 1.234 -11.486 17.417 Atomic orbital electron populations 1.23178 0.77663 1.04825 1.01637 1.87970 1.22771 1.24505 1.94867 1.20173 0.89631 0.87715 0.93183 0.85520 1.23993 0.87611 0.82427 0.76586 1.90587 1.70056 1.33026 1.49280 1.86453 1.36039 1.34338 1.69902 1.20393 0.75867 0.97552 0.89632 0.97739 1.21964 1.01815 0.97754 0.98202 1.21280 1.06687 1.01282 1.29167 0.91013 1.25887 0.94693 1.00879 0.96991 1.70026 1.10918 1.33739 1.40967 0.85134 0.77635 0.78010 0.78344 1.19685 1.20081 1.18385 1.19911 1.04586 0.95424 0.93202 1.21095 0.98304 0.99540 0.93763 1.21425 1.00238 0.97316 0.95764 1.21609 0.97568 0.92815 1.00850 1.21480 0.99298 1.01187 0.92224 1.21258 0.98730 0.94018 0.98063 0.92337 0.92149 0.87340 0.89883 0.96410 0.93471 0.91934 0.86847 0.83832 0.82893 0.83061 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.81 113.37 1.23 1.68 16 2 O -0.38 -12.39 9.04 -129.95 -1.18 -13.56 16 3 C 0.15 5.11 2.84 29.10 0.08 5.19 16 4 H 0.13 3.47 7.70 -2.39 -0.02 3.45 16 5 C 0.45 20.73 7.24 71.23 0.52 21.24 16 6 O -0.54 -28.86 15.73 28.36 0.45 -28.41 16 7 O -0.35 -17.56 9.85 -51.34 -0.51 -18.07 16 8 C 0.22 12.44 2.56 29.85 0.08 12.52 16 9 H 0.00 0.31 7.16 -2.39 -0.02 0.29 16 10 C -0.14 -7.52 9.32 71.98 0.67 -6.85 16 11 C -0.55 -31.33 8.90 25.60 0.23 -31.11 16 12 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 13 C 0.02 0.84 5.30 84.66 0.45 1.29 16 14 N -0.92 -53.51 11.32 21.45 0.24 -53.26 16 15 Si 0.99 42.82 29.54 68.60 2.03 44.85 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 C -0.13 -3.95 4.93 -19.86 -0.10 -4.05 16 20 C -0.11 -3.18 9.35 22.27 0.21 -2.97 16 21 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 22 C -0.11 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.10 -2.66 9.68 22.27 0.22 -2.45 16 25 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 4.74 6.07 -2.38 -0.01 4.73 16 29 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.11 3.53 7.64 -2.91 -0.02 3.51 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -72.10 315.45 6.34 -65.76 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.06 Total: 15.38 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.25 Total: -12.69 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.24 Total: -53.26 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -1.24 Total: -60.04 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.10 6.34 -65.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.606 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds