Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 H 1.09004 * 109.47090 * 30.00361 * 3 2 1 5 5 C 1.50701 * 109.46915 * 150.00007 * 3 2 1 6 6 O 1.20819 * 120.00144 * 5.00096 * 5 3 2 7 7 O 1.34230 * 119.99868 * 185.00050 * 5 3 2 8 8 C 1.45198 * 117.00092 * 180.02562 * 7 5 3 9 9 H 1.08995 * 109.47209 * 29.99732 * 8 7 5 10 10 C 1.53000 * 109.46788 * 269.99941 * 8 7 5 11 11 C 1.50701 * 109.47145 * 150.00009 * 8 7 5 12 12 H 1.07997 * 120.00294 * 5.37727 * 11 8 7 13 13 C 1.37877 * 119.99906 * 185.37114 * 11 8 7 14 14 N 1.31510 * 120.00008 * 185.16186 * 13 11 8 15 15 Si 1.86809 * 119.99997 * 5.17024 * 13 11 8 16 16 H 1.48503 * 109.46785 * 269.99611 * 15 13 11 17 17 H 1.48499 * 109.47144 * 29.99486 * 15 13 11 18 18 H 1.48491 * 109.47004 * 149.99871 * 15 13 11 19 19 C 1.50699 * 109.47064 * 270.00227 * 3 2 1 20 20 C 1.38234 * 119.99924 * 324.72213 * 19 3 2 21 21 C 1.38237 * 119.99700 * 179.78841 * 20 19 3 22 22 C 1.38231 * 120.00106 * 0.44894 * 21 20 19 23 23 C 1.38234 * 119.99807 * 359.80613 * 22 21 20 24 24 C 1.38233 * 120.00277 * 359.97438 * 23 22 21 25 25 H 1.09009 * 109.47224 * 300.00002 * 1 2 3 26 26 H 1.08997 * 109.47355 * 59.99730 * 1 2 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47428 * 294.97203 * 10 8 7 29 29 H 1.08994 * 109.47399 * 54.97649 * 10 8 7 30 30 H 1.09008 * 109.47161 * 174.97441 * 10 8 7 31 31 H 0.96997 * 120.00168 * 355.00561 * 14 13 11 32 32 H 1.08003 * 119.99878 * 0.02562 * 20 19 3 33 33 H 1.07999 * 119.99658 * 180.27733 * 21 20 19 34 34 H 1.08005 * 119.99858 * 179.83512 * 22 21 20 35 35 H 1.07997 * 119.99461 * 180.02562 * 23 22 21 36 36 H 1.07998 * 119.99639 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7880 0.2085 1.0899 7 8 4.0227 2.3993 0.9216 8 6 5.2951 2.2838 1.6115 9 1 5.7408 1.3138 1.3917 10 6 5.0709 2.4121 3.1195 11 6 6.2200 3.3788 1.1461 12 1 5.8583 4.1412 0.4722 13 6 7.5281 3.4073 1.5809 14 7 8.3067 4.4166 1.2574 15 14 8.1946 2.0122 2.6294 16 1 7.9717 2.3216 4.0646 17 1 7.4923 0.7513 2.2800 18 1 9.6494 1.8548 2.3770 19 6 2.2145 1.7644 -1.4208 20 6 2.5650 0.8519 -2.3982 21 6 2.7481 1.2722 -3.7024 22 6 2.5898 2.6064 -4.0273 23 6 2.2444 3.5197 -3.0488 24 6 2.0569 3.0987 -1.7455 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 4.7088 3.4142 3.3491 29 1 4.3335 1.6768 3.4411 30 1 6.0109 2.2367 3.6428 31 1 7.9840 5.1041 0.6540 32 1 2.6921 -0.1900 -2.1437 33 1 3.0176 0.5585 -4.4669 34 1 2.7354 2.9351 -5.0457 35 1 2.1203 4.5620 -3.3028 36 1 1.7875 3.8125 -0.9811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = -104.496328 kcal Electronic energy + Delta-G solvation = -20115.100151 eV Core-core repulsion = 16950.769465 eV Total energy + Delta-G solvation = -3164.330686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25659 -38.92679 -37.57637 -35.74682 -33.29575 -32.10495 -30.81901 -30.42708 -27.95376 -26.00363 -24.90152 -22.50049 -22.44448 -21.12398 -19.69534 -17.86769 -17.41693 -16.94849 -16.51629 -16.01523 -15.60757 -14.85695 -14.57870 -14.50926 -14.13104 -13.59914 -13.29815 -12.97094 -12.84957 -12.82542 -12.39444 -12.17483 -11.72377 -11.64355 -11.48526 -11.25276 -10.93552 -10.65961 -10.20598 -10.12485 -9.93066 -9.66925 -9.64663 -8.83162 -8.76563 -8.69595 -8.57700 -6.61057 -4.25860 1.30957 1.49277 2.75937 2.91737 3.30240 3.40972 3.53484 3.76993 4.26176 4.36384 4.59596 4.84970 5.05337 5.07519 5.15701 5.19749 5.24811 5.27138 5.40494 5.52848 5.56724 5.65666 5.96781 6.09652 6.18328 6.32963 6.42168 6.49559 6.52981 6.56484 6.61655 6.96545 7.03371 7.07598 7.35225 7.76807 8.24214 8.46448 8.82445 9.43453 10.81766 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.006415 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.409745 B = 4363.693267 C = 5194.370962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.141 3.859 4 H 0.102 0.898 5 C 0.457 3.543 6 O -0.499 6.499 7 O -0.338 6.338 8 C 0.190 3.810 9 H 0.046 0.954 10 C -0.167 4.167 11 C -0.597 4.597 12 H 0.070 0.930 13 C 0.037 3.963 14 N -0.901 5.901 15 Si 1.045 2.955 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.283 1.283 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.090 4.090 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 -4.789 -6.446 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.082 3.918 4 H 0.119 0.881 5 C 0.298 3.702 6 O -0.387 6.387 7 O -0.254 6.254 8 C 0.136 3.864 9 H 0.063 0.937 10 C -0.224 4.224 11 C -0.635 4.635 12 H 0.088 0.912 13 C -0.169 4.169 14 N -0.534 5.534 15 Si 0.873 3.127 16 H -0.205 1.205 17 H -0.200 1.200 18 H -0.209 1.209 19 C -0.114 4.114 20 C -0.106 4.106 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.478 -5.744 -5.472 16.509 hybrid contribution -1.426 0.754 -0.770 1.788 sum -15.904 -4.990 -6.243 17.799 Atomic orbital electron populations 1.22901 0.80287 1.03229 1.00314 1.88011 1.19953 1.24590 1.94719 1.20191 0.92302 0.86689 0.92655 0.88061 1.22873 0.86420 0.83613 0.77322 1.90609 1.68253 1.31875 1.47980 1.86515 1.35654 1.33074 1.70144 1.21119 0.77402 0.99820 0.88055 0.93677 1.22472 1.00662 1.01114 0.98189 1.21988 0.95871 1.11944 1.33655 0.91230 1.25664 0.92634 1.00429 0.98139 1.70816 1.39361 1.10369 1.32900 0.84016 0.76596 0.75788 0.76321 1.20500 1.19980 1.20887 1.19900 1.02978 0.94489 0.94067 1.21023 0.97027 1.00033 0.92536 1.21122 1.00850 0.96103 0.96312 1.21193 0.99060 0.93472 0.99382 1.21092 1.00362 0.99624 0.92966 1.21005 0.98519 0.94553 0.96743 0.93650 0.93590 0.88994 0.92027 0.94647 0.92150 0.91899 0.85395 0.85961 0.86095 0.85807 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.39 16 2 O -0.35 -5.46 9.04 -55.14 -0.50 -5.96 16 3 C 0.14 2.28 2.84 -29.04 -0.08 2.20 16 4 H 0.10 1.34 7.70 -51.93 -0.40 0.94 16 5 C 0.46 9.77 7.25 36.01 0.26 10.03 16 6 O -0.50 -12.02 15.73 -25.46 -0.40 -12.42 16 7 O -0.34 -8.01 9.85 -39.26 -0.39 -8.40 16 8 C 0.19 4.93 2.14 -27.88 -0.06 4.87 16 9 H 0.05 1.25 5.66 -51.93 -0.29 0.95 16 10 C -0.17 -3.85 9.14 37.16 0.34 -3.51 16 11 C -0.60 -17.33 9.26 -34.44 -0.32 -17.65 16 12 H 0.07 2.16 8.04 -52.49 -0.42 1.74 16 13 C 0.04 1.07 5.43 -17.82 -0.10 0.97 16 14 N -0.90 -27.56 13.70 55.43 0.76 -26.80 16 15 Si 1.04 25.73 25.29 -169.99 -4.30 21.43 16 16 H -0.28 -6.39 6.81 56.52 0.38 -6.01 16 17 H -0.27 -6.56 6.36 56.52 0.36 -6.20 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.11 -1.77 4.93 -104.63 -0.52 -2.28 16 20 C -0.09 -1.32 9.35 -39.58 -0.37 -1.69 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.11 -1.39 10.05 -39.59 -0.40 -1.79 16 23 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 24 C -0.09 -1.28 9.68 -39.59 -0.38 -1.67 16 25 H 0.04 0.41 8.09 -51.92 -0.42 -0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.37 4.40 -51.92 -0.23 1.15 16 31 H 0.27 8.21 8.72 -40.82 -0.36 7.86 16 32 H 0.13 1.93 7.64 -52.48 -0.40 1.52 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -33.60 309.87 -6.24 -39.84 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.76 Total: 0.77 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.33 Total: -13.14 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.76 Total: -26.80 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.29 Total: -26.78 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.30 Total: 21.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.60 -6.24 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.659 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds