Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 H 1.09004 * 109.47090 * 30.00361 * 3 2 1 5 5 C 1.50701 * 109.46915 * 150.00007 * 3 2 1 6 6 O 1.20819 * 120.00144 * 5.00096 * 5 3 2 7 7 O 1.34230 * 119.99868 * 185.00050 * 5 3 2 8 8 C 1.45198 * 117.00092 * 180.02562 * 7 5 3 9 9 H 1.08995 * 109.47209 * 29.99732 * 8 7 5 10 10 C 1.53000 * 109.46788 * 269.99941 * 8 7 5 11 11 C 1.50701 * 109.47145 * 150.00009 * 8 7 5 12 12 H 1.07997 * 120.00294 * 5.37727 * 11 8 7 13 13 C 1.37877 * 119.99906 * 185.37114 * 11 8 7 14 14 N 1.31510 * 120.00008 * 185.16186 * 13 11 8 15 15 Si 1.86809 * 119.99997 * 5.17024 * 13 11 8 16 16 H 1.48503 * 109.46785 * 269.99611 * 15 13 11 17 17 H 1.48499 * 109.47144 * 29.99486 * 15 13 11 18 18 H 1.48491 * 109.47004 * 149.99871 * 15 13 11 19 19 C 1.50699 * 109.47064 * 270.00227 * 3 2 1 20 20 C 1.38234 * 119.99924 * 324.72213 * 19 3 2 21 21 C 1.38237 * 119.99700 * 179.78841 * 20 19 3 22 22 C 1.38231 * 120.00106 * 0.44894 * 21 20 19 23 23 C 1.38234 * 119.99807 * 359.80613 * 22 21 20 24 24 C 1.38233 * 120.00277 * 359.97438 * 23 22 21 25 25 H 1.09009 * 109.47224 * 300.00002 * 1 2 3 26 26 H 1.08997 * 109.47355 * 59.99730 * 1 2 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47428 * 294.97203 * 10 8 7 29 29 H 1.08994 * 109.47399 * 54.97649 * 10 8 7 30 30 H 1.09008 * 109.47161 * 174.97441 * 10 8 7 31 31 H 0.96997 * 120.00168 * 355.00561 * 14 13 11 32 32 H 1.08003 * 119.99878 * 0.02562 * 20 19 3 33 33 H 1.07999 * 119.99658 * 180.27733 * 21 20 19 34 34 H 1.08005 * 119.99858 * 179.83512 * 22 21 20 35 35 H 1.07997 * 119.99461 * 180.02562 * 23 22 21 36 36 H 1.07998 * 119.99639 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7880 0.2085 1.0899 7 8 4.0227 2.3993 0.9216 8 6 5.2951 2.2838 1.6115 9 1 5.7408 1.3138 1.3917 10 6 5.0709 2.4121 3.1195 11 6 6.2200 3.3788 1.1461 12 1 5.8583 4.1412 0.4722 13 6 7.5281 3.4073 1.5809 14 7 8.3067 4.4166 1.2574 15 14 8.1946 2.0122 2.6294 16 1 7.9717 2.3216 4.0646 17 1 7.4923 0.7513 2.2800 18 1 9.6494 1.8548 2.3770 19 6 2.2145 1.7644 -1.4208 20 6 2.5650 0.8519 -2.3982 21 6 2.7481 1.2722 -3.7024 22 6 2.5898 2.6064 -4.0273 23 6 2.2444 3.5197 -3.0488 24 6 2.0569 3.0987 -1.7455 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 4.7088 3.4142 3.3491 29 1 4.3335 1.6768 3.4411 30 1 6.0109 2.2367 3.6428 31 1 7.9840 5.1041 0.6540 32 1 2.6921 -0.1900 -2.1437 33 1 3.0176 0.5585 -4.4669 34 1 2.7354 2.9351 -5.0457 35 1 2.1203 4.5620 -3.3028 36 1 1.7875 3.8125 -0.9811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = -125.144049 kcal Electronic energy + Delta-G solvation = -20115.995503 eV Core-core repulsion = 16950.769465 eV Total energy + Delta-G solvation = -3165.226038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78489 -40.24058 -38.73940 -37.54431 -35.42398 -33.34940 -32.35598 -31.84876 -29.06937 -27.16133 -26.87168 -24.01601 -23.52702 -22.58133 -21.43701 -19.95640 -18.94718 -18.20749 -17.91416 -17.52894 -16.83772 -16.36617 -15.93096 -15.59355 -15.48642 -15.16695 -14.93840 -14.47604 -14.31356 -14.21236 -13.83068 -13.69280 -13.54168 -13.24889 -12.61675 -12.54160 -12.25944 -12.10268 -11.99667 -11.84340 -11.59738 -11.57285 -10.94248 -10.90409 -10.79391 -9.87738 -9.80718 -8.94076 -6.60400 0.22224 0.44516 1.12109 1.34364 1.45025 1.47140 1.62434 2.31901 2.70149 2.91014 3.03272 3.45582 3.70241 3.74013 4.04744 4.12943 4.21752 4.24641 4.44086 4.47199 4.50935 4.53506 4.57213 4.63081 4.74045 4.80153 4.94860 5.08749 5.21230 5.37611 5.46888 5.48344 5.54660 5.71411 5.89109 5.92077 6.02741 6.34961 6.78490 7.17969 8.48200 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.006415 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.409745 B = 4363.693267 C = 5194.370962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.153 3.847 4 H 0.131 0.869 5 C 0.452 3.548 6 O -0.531 6.531 7 O -0.347 6.347 8 C 0.188 3.812 9 H 0.028 0.972 10 C -0.160 4.160 11 C -0.605 4.605 12 H 0.035 0.965 13 C -0.005 4.005 14 N -0.924 5.924 15 Si 1.077 2.923 16 H -0.245 1.245 17 H -0.267 1.267 18 H -0.277 1.277 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.128 4.128 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.259 0.741 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 -5.275 -6.447 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.298 6.298 3 C 0.094 3.906 4 H 0.148 0.852 5 C 0.295 3.705 6 O -0.421 6.421 7 O -0.263 6.263 8 C 0.134 3.866 9 H 0.046 0.954 10 C -0.218 4.218 11 C -0.643 4.643 12 H 0.053 0.947 13 C -0.205 4.205 14 N -0.559 5.559 15 Si 0.898 3.102 16 H -0.170 1.170 17 H -0.192 1.192 18 H -0.202 1.202 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.146 4.146 24 C -0.122 4.122 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.784 -6.214 -5.481 17.827 hybrid contribution -1.131 0.918 -0.916 1.721 sum -16.915 -5.296 -6.397 18.844 Atomic orbital electron populations 1.23190 0.77592 1.04899 1.01655 1.87976 1.22791 1.24186 1.94834 1.20149 0.89726 0.87940 0.92810 0.85189 1.23976 0.87678 0.82302 0.76548 1.90578 1.69429 1.32647 1.49397 1.86495 1.34892 1.34600 1.70340 1.20875 0.78242 0.97406 0.90055 0.95395 1.22354 1.01620 1.02144 0.95660 1.22092 0.97094 1.11999 1.33104 0.94701 1.27001 0.92994 1.01667 0.98852 1.70921 1.39923 1.11144 1.33865 0.83625 0.76431 0.73291 0.76841 1.17002 1.19217 1.20236 1.19949 1.04516 0.95236 0.93652 1.21130 0.98125 0.99729 0.93657 1.21446 1.00142 0.97194 0.96024 1.21607 0.97606 0.92990 1.00811 1.21479 0.99520 1.01092 0.92524 1.21249 0.98832 0.94240 0.97899 0.92068 0.92427 0.87225 0.91474 0.92630 0.91634 0.93199 0.86360 0.83691 0.83047 0.83418 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.63 16 2 O -0.38 -11.34 9.04 -129.95 -1.18 -12.51 16 3 C 0.15 4.84 2.84 29.10 0.08 4.92 16 4 H 0.13 3.24 7.70 -2.39 -0.02 3.22 16 5 C 0.45 19.30 7.25 71.24 0.52 19.81 16 6 O -0.53 -25.68 15.73 28.40 0.45 -25.23 16 7 O -0.35 -16.55 9.85 -51.42 -0.51 -17.06 16 8 C 0.19 9.81 2.14 29.85 0.06 9.87 16 9 H 0.03 1.56 5.66 -2.39 -0.01 1.55 16 10 C -0.16 -7.17 9.14 71.98 0.66 -6.51 16 11 C -0.61 -35.85 9.26 25.60 0.24 -35.61 16 12 H 0.03 2.25 8.04 -2.91 -0.02 2.22 16 13 C -0.01 -0.32 5.43 84.66 0.46 0.14 16 14 N -0.92 -57.35 13.70 21.45 0.29 -57.06 16 15 Si 1.08 50.87 25.29 68.60 1.73 52.60 16 16 H -0.25 -10.30 6.81 99.48 0.68 -9.63 16 17 H -0.27 -12.25 6.36 99.48 0.63 -11.62 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 C -0.13 -4.05 4.93 -19.87 -0.10 -4.15 16 20 C -0.11 -3.21 9.35 22.27 0.21 -3.00 16 21 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 22 C -0.11 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 24 C -0.10 -2.85 9.68 22.27 0.22 -2.64 16 25 H 0.06 0.94 8.09 -2.38 -0.02 0.92 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.83 4.40 -2.38 -0.01 2.82 16 31 H 0.26 16.20 8.72 -92.71 -0.81 15.39 16 32 H 0.12 3.63 7.64 -2.91 -0.02 3.60 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -73.69 309.87 5.96 -67.73 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.93 Total: 15.15 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 4.24 Total: -23.61 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.29 Total: -57.06 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -1.24 Total: -54.81 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.73 Total: 52.60 kcal Total: -73.69 5.96 -67.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.417 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds