Wall clock time and date at job start Mon Mar 30 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.53002 * 109.47317 * 180.02562 * 5 4 2 7 7 C 1.52991 * 109.47310 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47479 * 179.97438 * 7 6 5 9 9 H 1.08007 * 119.99696 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00420 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00027 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00040 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47016 * 89.99743 * 12 10 8 14 14 H 1.48496 * 109.47390 * 209.99909 * 12 10 8 15 15 H 1.48500 * 109.47230 * 330.00126 * 12 10 8 16 16 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 17 17 C 1.33706 * 124.51034 * 259.99824 * 16 2 1 18 18 C 1.37622 * 115.09201 * 180.02562 * 17 16 2 19 19 C 1.36623 * 113.27125 * 0.02562 * 18 17 16 20 20 C 1.43203 * 125.45940 * 179.97438 * 19 18 17 21 21 N 6.48877 * 106.88956 * 132.79045 * 2 1 3 22 22 S 1.70614 * 124.50916 * 79.70075 * 16 2 1 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.00896 * 111.00728 * 321.04492 * 4 2 1 27 27 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 28 28 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 29 29 H 1.09010 * 109.46876 * 299.99637 * 6 5 4 30 30 H 1.09000 * 109.47585 * 59.99024 * 6 5 4 31 31 H 1.08998 * 109.47265 * 299.99539 * 7 6 5 32 32 H 1.09000 * 109.47802 * 59.99535 * 7 6 5 33 33 H 0.96999 * 120.00260 * 179.97438 * 11 10 8 34 34 H 1.07998 * 122.45899 * 0.02562 * 17 16 2 35 35 H 1.08002 * 123.36195 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5949 -0.5331 -3.5745 7 6 2.6597 0.4198 -4.7697 8 6 3.1651 -0.3243 -5.9787 9 1 3.4155 -1.3722 -5.9022 10 6 3.3079 0.3324 -7.1826 11 7 3.7494 -0.3170 -8.2376 12 14 2.8742 2.1445 -7.3152 13 1 4.0741 2.9643 -7.0091 14 1 2.4095 2.4427 -8.6937 15 1 1.7945 2.4671 -6.3481 16 6 2.0323 -0.7104 1.2305 17 6 2.4653 -0.0959 2.3362 18 6 2.8815 -0.9345 3.3450 19 6 2.7743 -2.2584 3.0250 20 6 3.1329 -3.3510 3.8784 21 7 3.4151 -4.2178 4.5563 22 16 2.1176 -2.4059 1.4006 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7587 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 1.6643 0.8135 -4.9749 32 1 3.3362 1.2435 -4.5415 33 1 3.8495 0.1449 -9.0847 34 1 2.4868 0.9797 2.4310 35 1 3.2555 -0.5813 4.2946 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127415735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:23 Heat of formation + Delta-G solvation = 45.116168 kcal Electronic energy + Delta-G solvation = -16292.478005 eV Core-core repulsion = 13609.680626 eV Total energy + Delta-G solvation = -2682.797379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88256 -37.37716 -36.37206 -34.11415 -32.23131 -30.37183 -28.94452 -26.43386 -25.34820 -22.61415 -21.89590 -20.97991 -20.22169 -18.47666 -16.75033 -16.55880 -15.58443 -15.25059 -14.80086 -14.51470 -14.20134 -14.13467 -13.70193 -13.39984 -13.31856 -12.96270 -12.78433 -12.40571 -12.31580 -12.13046 -11.89037 -11.66257 -11.54045 -11.04177 -10.98816 -10.83579 -10.00341 -9.77902 -9.65162 -9.20108 -8.94293 -8.82064 -8.55173 -8.45514 -6.05177 -4.03275 0.21912 0.94987 1.66554 2.11617 2.66550 3.06499 3.29015 3.36437 3.38926 3.69062 4.01672 4.43633 4.48292 4.79692 4.95237 5.03764 5.12035 5.28472 5.39385 5.42744 5.59816 5.62141 5.67592 5.79801 5.91625 6.01962 6.08855 6.45847 6.49736 6.86177 7.01415 7.18265 7.29321 7.30314 7.42970 7.78508 8.53431 9.00346 9.57164 11.08400 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.036106 B = 0.003236 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.302847 B = 8651.684800 C = 9063.547461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.100 0.900 4 N -0.686 5.686 5 C 0.058 3.942 6 C -0.100 4.100 7 C -0.012 4.012 8 C -0.520 4.520 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.053 4.053 19 C -0.193 4.193 20 C 0.287 3.713 21 N -0.416 5.416 22 S 0.279 5.721 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.341 0.659 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.146 0.854 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 1.923 22.081 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.032 3.968 3 H 0.118 0.882 4 N -0.317 5.317 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.285 4.285 17 C -0.188 4.188 18 C -0.090 4.090 19 C -0.314 4.314 20 C -0.029 4.029 21 N -0.094 5.094 22 S 0.548 5.452 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.164 0.836 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.160 -0.548 22.114 22.963 hybrid contribution -0.775 2.719 0.212 2.836 sum -6.935 2.172 22.326 23.479 Atomic orbital electron populations 1.22549 0.95506 1.02819 1.03104 1.20089 0.92810 0.97452 0.86407 0.88187 1.60668 1.56690 1.10256 1.04044 1.22202 0.99394 0.95393 0.90002 1.21456 1.00989 0.98645 0.92748 1.19532 0.96368 0.95310 0.93806 1.21145 1.43558 0.98371 0.92703 0.91013 1.25050 0.94670 0.98124 0.95767 1.69919 1.46803 1.36651 1.00947 0.86763 0.79270 0.85909 0.77214 1.20296 1.21449 1.19102 1.24419 1.04762 0.99183 1.00163 1.19816 1.04626 1.01732 0.92656 1.20635 0.98165 0.89771 1.00439 1.20457 1.18501 0.92481 0.99919 1.24352 0.93215 0.92319 0.92966 1.81294 1.09877 1.09234 1.09010 1.83301 1.55815 1.01553 1.04510 0.91531 0.91363 0.92056 0.84047 0.95273 0.91145 0.91814 0.92932 0.96851 0.97042 0.92749 0.83594 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.14 37.16 0.34 -1.06 16 2 C 0.14 1.32 2.98 -68.87 -0.21 1.11 16 3 H 0.10 0.89 7.77 -51.93 -0.40 0.49 16 4 N -0.69 -7.97 5.93 -107.95 -0.64 -8.61 16 5 C 0.06 0.82 5.48 -3.82 -0.02 0.80 16 6 C -0.10 -1.85 5.41 -26.73 -0.14 -2.00 16 7 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 8 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 9 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 10 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 11 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 12 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 16 C -0.16 -1.42 5.25 -35.90 -0.19 -1.61 16 17 C -0.16 -1.19 9.98 -41.40 -0.41 -1.60 16 18 C -0.05 -0.40 10.24 -40.39 -0.41 -0.81 16 19 C -0.19 -1.74 6.32 -38.24 -0.24 -1.99 16 20 C 0.29 3.12 15.83 -22.47 -0.36 2.76 16 21 N -0.42 -5.37 18.54 41.84 0.78 -4.60 16 22 S 0.28 2.44 22.67 -107.50 -2.44 0.00 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 26 H 0.34 3.72 8.47 -39.29 -0.33 3.39 16 27 H 0.03 0.39 7.44 -51.93 -0.39 0.01 16 28 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -31.22 318.06 -8.41 -39.63 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.82 Total: -2.95 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.19 Total: -17.98 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.91 Total: -40.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.44 Total: 0.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.22 -8.41 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.743 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds