Wall clock time and date at job start Mon Mar 30 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.53002 * 109.47317 * 180.02562 * 5 4 2 7 7 C 1.52991 * 109.47310 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47479 * 179.97438 * 7 6 5 9 9 H 1.08007 * 119.99696 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00420 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00027 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00040 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47016 * 89.99743 * 12 10 8 14 14 H 1.48496 * 109.47390 * 209.99909 * 12 10 8 15 15 H 1.48500 * 109.47230 * 330.00126 * 12 10 8 16 16 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 17 17 C 1.33706 * 124.51034 * 259.99824 * 16 2 1 18 18 C 1.37622 * 115.09201 * 180.02562 * 17 16 2 19 19 C 1.36623 * 113.27125 * 0.02562 * 18 17 16 20 20 C 1.43203 * 125.45940 * 179.97438 * 19 18 17 21 21 N 6.48877 * 106.88956 * 132.79045 * 2 1 3 22 22 S 1.70614 * 124.50916 * 79.70075 * 16 2 1 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.00896 * 111.00728 * 321.04492 * 4 2 1 27 27 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 28 28 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 29 29 H 1.09010 * 109.46876 * 299.99637 * 6 5 4 30 30 H 1.09000 * 109.47585 * 59.99024 * 6 5 4 31 31 H 1.08998 * 109.47265 * 299.99539 * 7 6 5 32 32 H 1.09000 * 109.47802 * 59.99535 * 7 6 5 33 33 H 0.96999 * 120.00260 * 179.97438 * 11 10 8 34 34 H 1.07998 * 122.45899 * 0.02562 * 17 16 2 35 35 H 1.08002 * 123.36195 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5949 -0.5331 -3.5745 7 6 2.6597 0.4198 -4.7697 8 6 3.1651 -0.3243 -5.9787 9 1 3.4155 -1.3722 -5.9022 10 6 3.3079 0.3324 -7.1826 11 7 3.7494 -0.3170 -8.2376 12 14 2.8742 2.1445 -7.3152 13 1 4.0741 2.9643 -7.0091 14 1 2.4095 2.4427 -8.6937 15 1 1.7945 2.4671 -6.3481 16 6 2.0323 -0.7104 1.2305 17 6 2.4653 -0.0959 2.3362 18 6 2.8815 -0.9345 3.3450 19 6 2.7743 -2.2584 3.0250 20 6 3.1329 -3.3510 3.8784 21 7 3.4151 -4.2178 4.5563 22 16 2.1176 -2.4059 1.4006 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7587 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 1.6643 0.8135 -4.9749 32 1 3.3362 1.2435 -4.5415 33 1 3.8495 0.1449 -9.0847 34 1 2.4868 0.9797 2.4310 35 1 3.2555 -0.5813 4.2946 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127415735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:23 Heat of formation + Delta-G solvation = 25.919024 kcal Electronic energy + Delta-G solvation = -16293.310455 eV Core-core repulsion = 13609.680626 eV Total energy + Delta-G solvation = -2683.629829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57095 -38.26559 -37.28539 -35.72094 -33.96532 -31.60726 -29.76266 -27.87818 -26.12852 -24.05650 -22.65904 -21.87173 -21.65231 -19.28163 -18.78994 -17.27762 -16.60466 -16.35604 -16.06936 -15.53870 -15.32045 -15.07629 -14.71096 -14.62547 -14.28260 -14.17513 -13.79998 -13.60683 -13.35558 -13.08796 -12.99416 -12.64044 -12.58936 -12.48535 -12.25480 -11.76146 -11.63326 -11.51890 -11.38601 -11.23764 -10.73548 -9.65613 -9.47975 -9.31379 -8.26619 -6.30995 -0.45224 0.25956 1.02195 1.38906 1.40883 1.47883 1.52791 1.86279 2.28859 2.39195 2.93348 3.09038 3.16497 3.77693 4.11650 4.26906 4.37687 4.40838 4.45466 4.57055 4.70361 4.80665 4.86664 5.00397 5.03530 5.07564 5.16183 5.23275 5.31485 5.44791 5.57464 5.66659 5.70447 6.06632 6.32586 6.36609 6.42110 6.78331 7.33759 8.90556 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.036106 B = 0.003236 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.302847 B = 8651.684800 C = 9063.547461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.147 3.853 3 H 0.108 0.892 4 N -0.694 5.694 5 C 0.074 3.926 6 C -0.093 4.093 7 C -0.010 4.010 8 C -0.533 4.533 9 H 0.027 0.973 10 C -0.002 4.002 11 N -0.956 5.956 12 Si 0.956 3.044 13 H -0.267 1.267 14 H -0.287 1.287 15 H -0.241 1.241 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.038 4.038 19 C -0.211 4.211 20 C 0.306 3.694 21 N -0.461 5.461 22 S 0.264 5.736 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.344 0.656 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.265 0.735 34 H 0.171 0.829 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 4.762 23.753 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.035 3.965 3 H 0.126 0.874 4 N -0.325 5.325 5 C -0.055 4.055 6 C -0.131 4.131 7 C -0.048 4.048 8 C -0.571 4.571 9 H 0.046 0.954 10 C -0.198 4.198 11 N -0.597 5.597 12 Si 0.779 3.221 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.164 1.164 16 C -0.290 4.290 17 C -0.183 4.183 18 C -0.075 4.075 19 C -0.332 4.332 20 C -0.008 4.008 21 N -0.140 5.140 22 S 0.533 5.467 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.163 0.837 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.188 0.812 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.255 2.275 23.817 25.001 hybrid contribution -0.409 1.765 -0.317 1.840 sum -7.664 4.040 23.499 25.046 Atomic orbital electron populations 1.22504 0.94358 1.03060 1.03635 1.20131 0.93703 0.97486 0.85152 0.87362 1.60565 1.57662 1.10228 1.04063 1.21895 0.99780 0.94992 0.88848 1.21277 1.00319 0.98049 0.93467 1.19487 0.96365 0.95766 0.93180 1.21564 1.43357 0.97036 0.95181 0.95438 1.26118 0.94535 1.03957 0.95191 1.70092 1.48629 1.39161 1.01806 0.85577 0.79982 0.78813 0.77752 1.19190 1.21307 1.16382 1.24470 1.05201 0.98833 1.00489 1.20088 1.03376 1.02937 0.91881 1.20962 0.96395 0.88883 1.01250 1.20520 1.20100 0.92661 0.99900 1.24583 0.92039 0.91960 0.92249 1.81305 1.11699 1.10467 1.10528 1.83398 1.56278 1.02325 1.04687 0.90044 0.91735 0.92033 0.83736 0.94112 0.90619 0.93470 0.93549 0.95955 0.96167 0.92595 0.81191 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.14 71.98 0.66 -1.55 16 2 C 0.15 2.23 2.98 44.17 0.13 2.36 16 3 H 0.11 1.51 7.77 -2.39 -0.02 1.49 16 4 N -0.69 -14.67 5.93 -495.46 -2.94 -17.61 16 5 C 0.07 1.89 5.48 86.30 0.47 2.37 16 6 C -0.09 -3.37 5.41 30.59 0.17 -3.20 16 7 C -0.01 -0.45 4.04 29.84 0.12 -0.33 16 8 C -0.53 -30.64 9.66 25.60 0.25 -30.40 16 9 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 10 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 11 N -0.96 -60.34 13.96 21.45 0.30 -60.04 16 12 Si 0.96 43.42 27.47 68.60 1.88 45.31 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 16 C -0.17 -2.46 5.25 24.66 0.13 -2.33 16 17 C -0.15 -1.75 9.98 21.09 0.21 -1.54 16 18 C -0.04 -0.45 10.24 21.75 0.22 -0.23 16 19 C -0.21 -3.49 6.32 23.14 0.15 -3.34 16 20 C 0.31 6.47 15.83 88.33 1.40 7.87 16 21 N -0.46 -11.94 18.54 19.00 0.35 -11.59 16 22 S 0.26 4.28 22.67 -56.49 -1.28 3.00 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.88 7.45 -2.39 -0.02 0.86 16 25 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 26 H 0.34 6.98 8.47 -89.70 -0.76 6.22 16 27 H 0.04 0.97 7.44 -2.38 -0.02 0.95 16 28 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 32 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -69.10 318.06 2.96 -66.14 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 0.28 Total: 4.76 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.37 Total: -29.97 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -2.29 Total: -89.23 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.28 Total: 3.00 kcal Total: -69.10 2.96 -66.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.056 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds