Wall clock time and date at job start Mon Mar 30 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47092 * 2 1 4 4 N 1.46899 * 109.47231 * 120.00590 * 2 1 3 5 5 C 1.46903 * 110.99720 * 274.99863 * 4 2 1 6 6 C 1.52997 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47090 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47282 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99606 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00082 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 120.00196 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46836 * 89.99601 * 12 10 8 14 14 H 1.48501 * 109.46836 * 209.99794 * 12 10 8 15 15 H 1.48502 * 109.46867 * 329.99697 * 12 10 8 16 16 C 1.50706 * 109.47180 * 240.00599 * 2 1 3 17 17 C 1.33705 * 124.51452 * 99.72084 * 16 2 1 18 18 C 1.37615 * 115.09698 * 179.82672 * 17 16 2 19 19 C 1.36627 * 113.26914 * 0.45276 * 18 17 16 20 20 C 1.43196 * 125.45910 * 179.75686 * 19 18 17 21 21 N 6.48878 * 106.86193 * 227.22199 * 2 1 3 22 22 S 1.70611 * 124.50637 * 280.02313 * 16 2 1 23 23 H 1.09003 * 109.46936 * 59.99918 * 1 2 3 24 24 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47141 * 299.99547 * 1 2 3 26 26 H 1.00895 * 111.00229 * 38.95405 * 4 2 1 27 27 H 1.09004 * 109.47087 * 299.99900 * 5 4 2 28 28 H 1.08998 * 109.47470 * 59.99800 * 5 4 2 29 29 H 1.09004 * 109.46850 * 299.99784 * 6 5 4 30 30 H 1.08992 * 109.47615 * 59.99765 * 6 5 4 31 31 H 1.08991 * 109.47500 * 299.99883 * 7 6 5 32 32 H 1.09005 * 109.47129 * 60.00022 * 7 6 5 33 33 H 0.97001 * 120.00041 * 179.97438 * 11 10 8 34 34 H 1.08006 * 122.45164 * 0.02562 * 17 16 2 35 35 H 1.08002 * 123.36084 * 180.20714 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5963 -0.5331 3.5741 7 6 2.6611 0.4198 4.7694 8 6 3.1666 -0.3245 5.9783 9 1 3.4162 -1.3724 5.9018 10 6 3.3094 0.3321 7.1822 11 7 3.0049 1.6081 7.2755 12 14 3.9366 -0.5903 8.6807 13 1 5.4175 -0.4951 8.7364 14 1 3.3554 0.0079 9.9093 15 1 3.5355 -2.0171 8.5873 16 6 2.0324 -0.7103 -1.2306 17 6 2.4603 -0.0959 -2.3383 18 6 2.8805 -0.9343 -3.3455 19 6 2.7720 -2.2582 -3.0262 20 6 3.1290 -3.3507 -3.8803 21 7 3.4122 -4.2174 -4.5579 22 16 2.1239 -2.4057 -1.3983 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4497 -1.4980 1.4099 27 1 2.7589 1.0461 2.1182 28 1 1.0872 0.6162 2.5526 29 1 1.9202 -1.3569 3.8029 30 1 3.5917 -0.9265 3.3682 31 1 3.3368 1.2439 4.5409 32 1 1.6654 0.8128 4.9752 33 1 3.1050 2.0700 8.1226 34 1 2.4780 0.9797 -2.4344 35 1 3.2547 -0.5809 -4.2950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127415913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:25 Heat of formation + Delta-G solvation = 41.258663 kcal Electronic energy + Delta-G solvation = -16246.148648 eV Core-core repulsion = 13563.183996 eV Total energy + Delta-G solvation = -2682.964653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.83693 -37.31685 -36.32728 -34.02296 -32.20342 -30.11754 -28.79720 -26.14071 -25.26963 -22.78664 -21.84204 -20.96760 -20.28246 -18.41240 -16.57262 -16.29517 -15.50366 -15.15796 -14.70300 -14.46728 -14.39315 -14.12800 -13.64426 -13.32801 -13.28950 -12.92957 -12.51565 -12.34531 -12.21752 -12.01204 -11.65090 -11.57060 -11.40304 -10.95869 -10.86970 -10.63711 -10.53406 -9.75390 -9.39777 -9.10310 -8.89539 -8.78878 -8.38277 -8.35594 -6.01446 -4.03558 0.25063 0.97938 1.69926 2.15035 2.68504 3.08618 3.31558 3.37778 3.41149 3.71535 4.08589 4.45377 4.55583 4.86031 5.00581 5.08788 5.15367 5.34669 5.45927 5.50960 5.66215 5.72879 5.77265 5.86243 5.97909 6.05908 6.23892 6.63455 6.66840 7.07696 7.15065 7.20176 7.40605 7.65829 7.79888 7.98629 8.41708 9.03655 9.60758 11.09979 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.003124 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.935174 B = 8960.802767 C = 9469.545706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 H 0.101 0.899 4 N -0.687 5.687 5 C 0.061 3.939 6 C -0.108 4.108 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.162 4.162 17 C -0.159 4.159 18 C -0.052 4.052 19 C -0.194 4.194 20 C 0.288 3.712 21 N -0.418 5.418 22 S 0.278 5.722 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.339 0.661 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.147 0.853 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -2.489 -19.560 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.032 3.968 3 H 0.119 0.881 4 N -0.317 5.317 5 C -0.067 4.067 6 C -0.146 4.146 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.283 4.283 17 C -0.189 4.189 18 C -0.089 4.089 19 C -0.315 4.315 20 C -0.028 4.028 21 N -0.096 5.096 22 S 0.547 5.453 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.387 -4.833 -19.655 20.711 hybrid contribution -0.285 1.392 0.439 1.487 sum -4.672 -3.441 -19.216 20.073 Atomic orbital electron populations 1.22548 0.95513 1.02741 1.03141 1.20102 0.92812 0.97498 0.86412 0.88140 1.60708 1.56530 1.10311 1.04174 1.22181 0.99466 0.95306 0.89788 1.21635 1.00210 0.98980 0.93752 1.19058 0.97041 0.94310 0.91102 1.21249 1.43561 0.96442 0.94511 0.92658 1.25024 0.95598 0.94889 0.98984 1.69960 1.48883 1.09030 1.25747 0.86601 0.79054 0.80012 0.82385 1.20640 1.21261 1.19863 1.24445 1.04587 0.99123 1.00170 1.19824 1.04644 1.01767 0.92678 1.20634 0.98075 0.89769 1.00452 1.20454 1.18711 0.92474 0.99878 1.24356 0.93163 0.92306 0.92947 1.81292 1.09935 1.09269 1.09056 1.83279 1.56184 1.01676 1.04208 0.91567 0.92138 0.91280 0.84240 0.91139 0.95237 0.93577 0.92425 0.96561 0.96800 0.93021 0.83555 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.14 37.16 0.34 -1.17 16 2 C 0.14 1.41 2.98 -68.86 -0.21 1.20 16 3 H 0.10 0.98 7.77 -51.93 -0.40 0.58 16 4 N -0.69 -8.46 5.92 -107.94 -0.64 -9.10 16 5 C 0.06 0.93 5.48 -3.82 -0.02 0.90 16 6 C -0.11 -2.09 5.41 -26.73 -0.14 -2.24 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 9 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 12 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 16 C -0.16 -1.47 5.26 -35.89 -0.19 -1.66 16 17 C -0.16 -1.26 9.98 -41.40 -0.41 -1.67 16 18 C -0.05 -0.41 10.24 -40.39 -0.41 -0.82 16 19 C -0.19 -1.81 6.32 -38.24 -0.24 -2.05 16 20 C 0.29 3.17 15.83 -22.47 -0.36 2.82 16 21 N -0.42 -5.44 18.54 41.84 0.78 -4.67 16 22 S 0.28 2.51 22.67 -107.50 -2.44 0.07 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 25 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 26 H 0.34 3.91 8.47 -39.29 -0.33 3.58 16 27 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 28 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -30.57 321.65 -8.78 -39.35 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.85 Total: -3.43 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.19 Total: -17.60 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.87 Total: -39.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.44 Total: 0.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.57 -8.78 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.608 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds