Wall clock time and date at job start Mon Mar 30 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47092 * 2 1 4 4 N 1.46899 * 109.47231 * 120.00590 * 2 1 3 5 5 C 1.46903 * 110.99720 * 274.99863 * 4 2 1 6 6 C 1.52997 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47090 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47282 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99606 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00082 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 120.00196 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46836 * 89.99601 * 12 10 8 14 14 H 1.48501 * 109.46836 * 209.99794 * 12 10 8 15 15 H 1.48502 * 109.46867 * 329.99697 * 12 10 8 16 16 C 1.50706 * 109.47180 * 240.00599 * 2 1 3 17 17 C 1.33705 * 124.51452 * 99.72084 * 16 2 1 18 18 C 1.37615 * 115.09698 * 179.82672 * 17 16 2 19 19 C 1.36627 * 113.26914 * 0.45276 * 18 17 16 20 20 C 1.43196 * 125.45910 * 179.75686 * 19 18 17 21 21 N 6.48878 * 106.86193 * 227.22199 * 2 1 3 22 22 S 1.70611 * 124.50637 * 280.02313 * 16 2 1 23 23 H 1.09003 * 109.46936 * 59.99918 * 1 2 3 24 24 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47141 * 299.99547 * 1 2 3 26 26 H 1.00895 * 111.00229 * 38.95405 * 4 2 1 27 27 H 1.09004 * 109.47087 * 299.99900 * 5 4 2 28 28 H 1.08998 * 109.47470 * 59.99800 * 5 4 2 29 29 H 1.09004 * 109.46850 * 299.99784 * 6 5 4 30 30 H 1.08992 * 109.47615 * 59.99765 * 6 5 4 31 31 H 1.08991 * 109.47500 * 299.99883 * 7 6 5 32 32 H 1.09005 * 109.47129 * 60.00022 * 7 6 5 33 33 H 0.97001 * 120.00041 * 179.97438 * 11 10 8 34 34 H 1.08006 * 122.45164 * 0.02562 * 17 16 2 35 35 H 1.08002 * 123.36084 * 180.20714 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5963 -0.5331 3.5741 7 6 2.6611 0.4198 4.7694 8 6 3.1666 -0.3245 5.9783 9 1 3.4162 -1.3724 5.9018 10 6 3.3094 0.3321 7.1822 11 7 3.0049 1.6081 7.2755 12 14 3.9366 -0.5903 8.6807 13 1 5.4175 -0.4951 8.7364 14 1 3.3554 0.0079 9.9093 15 1 3.5355 -2.0171 8.5873 16 6 2.0324 -0.7103 -1.2306 17 6 2.4603 -0.0959 -2.3383 18 6 2.8805 -0.9343 -3.3455 19 6 2.7720 -2.2582 -3.0262 20 6 3.1290 -3.3507 -3.8803 21 7 3.4122 -4.2174 -4.5579 22 16 2.1239 -2.4057 -1.3983 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4497 -1.4980 1.4099 27 1 2.7589 1.0461 2.1182 28 1 1.0872 0.6162 2.5526 29 1 1.9202 -1.3569 3.8029 30 1 3.5917 -0.9265 3.3682 31 1 3.3368 1.2439 4.5409 32 1 1.6654 0.8128 4.9752 33 1 3.1050 2.0700 8.1226 34 1 2.4780 0.9797 -2.4344 35 1 3.2547 -0.5809 -4.2950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127415913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:25 Heat of formation + Delta-G solvation = 23.583094 kcal Electronic energy + Delta-G solvation = -16246.915119 eV Core-core repulsion = 13563.183996 eV Total energy + Delta-G solvation = -2683.731123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57550 -38.26077 -37.27581 -35.74004 -33.85256 -31.38045 -29.69099 -27.68965 -26.14313 -24.36372 -22.66769 -21.97534 -21.64430 -19.21832 -18.42952 -17.26867 -16.58114 -16.53149 -16.04576 -15.60174 -15.31389 -15.04555 -14.59928 -14.45655 -14.26419 -14.04557 -13.76294 -13.60720 -13.25386 -13.05668 -12.97842 -12.65588 -12.64026 -12.43562 -12.28153 -12.18631 -11.64111 -11.49832 -11.34271 -11.08032 -10.52843 -9.66116 -9.48005 -9.32815 -8.18375 -6.28596 -0.45407 0.26066 1.01671 1.41721 1.42518 1.47623 1.53586 1.86559 2.29202 2.42516 2.93548 3.15140 3.16208 3.77215 4.11340 4.26926 4.37242 4.42422 4.47062 4.56964 4.73948 4.81264 4.87531 5.03215 5.08593 5.14377 5.23824 5.27477 5.32164 5.44666 5.55842 5.80069 5.89856 6.02439 6.29913 6.36991 6.42306 6.88991 7.40653 8.93352 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.003124 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.935174 B = 8960.802767 C = 9469.545706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.146 3.854 3 H 0.104 0.896 4 N -0.689 5.689 5 C 0.076 3.924 6 C -0.094 4.094 7 C 0.025 3.975 8 C -0.542 4.542 9 H 0.058 0.942 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.962 3.038 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.264 1.264 16 C -0.169 4.169 17 C -0.153 4.153 18 C -0.038 4.038 19 C -0.210 4.210 20 C 0.307 3.693 21 N -0.461 5.461 22 S 0.269 5.731 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.345 0.655 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.051 0.949 31 H -0.008 1.008 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.169 0.831 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 -2.572 -20.179 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.121 0.879 4 N -0.321 5.321 5 C -0.053 4.053 6 C -0.132 4.132 7 C -0.012 4.012 8 C -0.580 4.580 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.786 3.214 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.188 1.188 16 C -0.291 4.291 17 C -0.184 4.184 18 C -0.075 4.075 19 C -0.331 4.331 20 C -0.008 4.008 21 N -0.139 5.139 22 S 0.539 5.461 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.010 0.990 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.186 0.814 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.465 -4.936 -20.290 21.354 hybrid contribution -0.278 1.481 0.606 1.624 sum -4.743 -3.455 -19.684 20.540 Atomic orbital electron populations 1.22499 0.94349 1.03153 1.03503 1.20122 0.93744 0.97394 0.85338 0.87854 1.60588 1.57496 1.10113 1.03863 1.21830 0.99221 0.94964 0.89252 1.21380 1.00283 0.98073 0.93482 1.18964 0.94892 0.94510 0.92863 1.21723 1.43576 0.96877 0.95838 0.92362 1.25948 0.95748 0.95766 1.02351 1.70084 1.49942 1.10644 1.26706 0.85497 0.78575 0.78994 0.78291 1.19904 1.20761 1.18780 1.24434 1.05268 0.99048 1.00321 1.20084 1.03394 1.02913 0.91973 1.20944 0.96404 0.88904 1.01228 1.20515 1.20104 0.92635 0.99858 1.24552 0.92031 0.91936 0.92246 1.81304 1.11657 1.10464 1.10493 1.83328 1.56499 1.01990 1.04309 0.89994 0.91739 0.92101 0.83653 0.91527 0.94934 0.93129 0.93040 0.98963 0.98883 0.92813 0.81396 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.14 71.98 0.66 -1.92 16 2 C 0.15 2.54 2.98 44.17 0.13 2.67 16 3 H 0.10 1.77 7.77 -2.38 -0.02 1.75 16 4 N -0.69 -15.96 5.92 -495.42 -2.93 -18.90 16 5 C 0.08 2.26 5.48 86.30 0.47 2.74 16 6 C -0.09 -3.64 5.41 30.59 0.17 -3.48 16 7 C 0.03 1.30 4.97 29.85 0.15 1.44 16 8 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 9 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 10 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 11 N -0.93 -56.26 13.29 21.44 0.28 -55.97 16 12 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 16 C -0.17 -2.69 5.26 24.66 0.13 -2.56 16 17 C -0.15 -1.95 9.98 21.09 0.21 -1.74 16 18 C -0.04 -0.48 10.24 21.75 0.22 -0.26 16 19 C -0.21 -3.54 6.32 23.14 0.15 -3.39 16 20 C 0.31 6.50 15.83 88.33 1.40 7.90 16 21 N -0.46 -11.89 18.54 19.00 0.35 -11.54 16 22 S 0.27 4.47 22.67 -56.49 -1.28 3.19 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 26 H 0.34 7.43 8.47 -89.70 -0.76 6.67 16 27 H 0.07 2.04 8.06 -2.38 -0.02 2.02 16 28 H 0.03 0.95 7.44 -2.39 -0.02 0.93 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -65.83 321.65 3.16 -62.67 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.33 Total: 3.05 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.38 Total: -28.48 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.30 Total: -86.40 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.28 Total: 3.19 kcal Total: -65.83 3.16 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.249 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds